AMBER Archive (2008)

Subject: Re: AMBER: Tutorial B5

From: Chih-Ying Lin (chihying_at_usc.edu)
Date: Wed Apr 23 2008 - 20:09:23 CDT

The AMBERHOME is still my environment variable.
But, I am still unable to use the command.

----- Original Message -----
From: Alessandro Nascimento <al.s.nascimento_at_gmail.com>
Date: Wednesday, April 23, 2008 5:33 pm
Subject: Re: AMBER: Tutorial B5
To: amber_at_scripps.edu
Cc: chihying_at_usc.edu

> If you were able to do this before, you've most probably lost you
> environment variables.
> You can try:
>
> % echo $AMBERHOME
>
> in your shell. If it returns nothing, that's the reason. You can add
> AMBERHOME to your environment variables using
>
> % export AMBERHOME=/usr/local/amber9 (or anywhere you installed
> amber), if you're using bash
>
> In the manual you can see more details.
>
> HTH,
>
> --alessandro
>
>
>
> On Wed, Apr 23, 2008 at 5:13 PM, Chih-Ying Lin <chihying_at_usc.edu>
> wrote:>
> >
> >
> > Hi
> > I have been practicing the Amber tutorials B5.
> > And everything runs well with the following command.
> > $AMBERHOME/exe/ptraj prmtop < ptraj.in > ptraj.out
> >
> > http://amber.scripps.edu/tutorials/basic/tutorial5/index.html
> >
> >
> > But I tried to practice the Amber tutorials B5 again today.
> > the following command become useless.
> > $AMBERHOME/exe/ptraj prmtop < ptraj.in > ptraj.out
> >
> > I don't know what happened.
> > Should I re-install or re-compile the Amber system ?
> >
> > Thanks
> > Lin
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