AMBER Archive (2008)

Subject: Re: AMBER: Amber installation

From: Mengjuei Hsieh (
Date: Fri Apr 11 2008 - 16:39:48 CDT


There are several possibilities that I can think of. Judging from the
output of your compilation, one of the problem might be, some of the
library are not linked.

Mine looks like this:
                   qm_div.o force.o \
        ../lmod/lmod.a ../lapack/lapack.a ../blas/blas.a \
../lib/nxtsec.o ../lib/sys.a -L/opt/lam-7.1.2/lib -llammpio
-llamf77mpi -lmpi -llam -lutil -ldl -lpthread -lrt
-L/opt/intel/mkl/8.0.1/lib/em64t -lmkl_lapack -lmkl_em64t -lguide

The differences are "-llammpio -llamf77mpi -lmpi -llam", are you sure
that you don't need that? If you are sure about that, then we can
proceed to solve next scenario I can think of. :-)



On Fri, Apr 11, 2008 at 6:23 AM, <> wrote: > Hi, > I have already tried to send this mail before, but I'm not sure I did it > in the right way. > I have tried to compile a sander parallel version using lam and gfortran > (but also intel compiler), but at the end of the process I can get > always the same error. > Could anybody help me? > This is the last part og my log file. > qm_div.o force.o \ > ../lmod/lmod.a ../lapack/lapack.a ../blas/blas.a \ > ../lib/nxtsec.o ../lib/sys.a -lmpi > evb_init.o: In function `evb_init_': ----------------------------------------------------------------------- The AMBER Mail Reflector To post, send mail to To unsubscribe, send "unsubscribe amber" to