AMBER Archive (2005) - Apr 2005 By DateMost recent messages
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Starting: Fri Apr 01 2005 - 00:42:27 CST
Ending: Sat Apr 30 2005 - 08:26:57 CDT
- AMBER: How to fix the torsion angles during energy minimization Ananda Rama Krishnan Selvaraj (Fri Apr 01 2005 - 00:42:27 CST)
- Re: AMBER: solvateoct mymolecule CHCL3BOX 10 PROBLEM!!! Jiri Matousek (Fri Apr 01 2005 - 01:37:39 CST)
- Re: AMBER: How to fix the torsion angles during energy minimization Ananda Rama Krishnan Selvaraj (Fri Apr 01 2005 - 06:54:18 CST)
- AMBER: scaleCharges with polarisable force fields Phineus Markwick (Fri Apr 01 2005 - 06:57:43 CST)
- AMBER: Problems with protonate on Linux Atro Tossavainen (Fri Apr 01 2005 - 07:09:32 CST)
- Re: AMBER: GB dynamics David A. Case (Fri Apr 01 2005 - 10:16:46 CST)
- Re: AMBER: scaleCharges with polarisable force fields David A. Case (Fri Apr 01 2005 - 10:31:22 CST)
- Re: AMBER: How to fix the torsion angles during energy minimization David A. Case (Fri Apr 01 2005 - 11:24:37 CST)
- Re: AMBER: Problems with protonate on Linux David A. Case (Fri Apr 01 2005 - 11:34:17 CST)
- AMBER: trajectory alignment using ptraj Wen Li (Fri Apr 01 2005 - 11:38:02 CST)
- Re: AMBER: trajectory alignment using ptraj Thomas E. Cheatham, III (Fri Apr 01 2005 - 11:47:30 CST)
- Re: AMBER: trajectory alignment using ptraj Wen Li (Fri Apr 01 2005 - 12:42:36 CST)
- Re: AMBER: trajectory alignment using ptraj Wen Li (Fri Apr 01 2005 - 14:12:34 CST)
- Re: AMBER: trajectory alignment using ptraj Thomas E. Cheatham, III (Fri Apr 01 2005 - 14:39:07 CST)
- Re: AMBER: trajectory alignment using ptraj Wen Li (Fri Apr 01 2005 - 15:23:14 CST)
- Re: AMBER: trajectory alignment using ptraj Wen Li (Fri Apr 01 2005 - 15:37:57 CST)
- Re: AMBER: trajectory alignment using ptraj Thomas E. Cheatham, III (Fri Apr 01 2005 - 15:38:50 CST)
- AMBER: reference of Targeted MD xhu1_at_memphis.edu (Fri Apr 01 2005 - 15:52:59 CST)
- Re: AMBER: GB dynamics Bill Ross (Fri Apr 01 2005 - 15:55:07 CST)
- AMBER: oxo-heme Peter Gannett (Fri Apr 01 2005 - 16:32:47 CST)
- Re: AMBER: trajectory alignment using ptraj Wen Li (Fri Apr 01 2005 - 20:42:43 CST)
- Re: AMBER: Compiling on dual-opteron with pathscale 2.1 on RHEL 4 AS Robert Duke (Sat Apr 02 2005 - 18:42:47 CST)
- AMBER: problem with input files when using ff02EP + pol3 Phineus Markwick (Sun Apr 03 2005 - 07:35:28 CDT)
- Re: AMBER: All the tests passed except prmtop and prepin... shuli (Sun Apr 03 2005 - 10:24:47 CDT)
- Re: AMBER: problem with input files when using ff02EP + pol3 David A. Case (Mon Apr 04 2005 - 00:18:29 CDT)
- AMBER: helical parameters obtaining Kateryna Miroshnychenko (Sat Apr 02 2005 - 05:08:17 CST)
- AMBER: surface area John (Mon Apr 04 2005 - 05:35:58 CDT)
- AMBER: Sander minimization & dynamic question chaiann ng (Mon Apr 04 2005 - 05:45:48 CDT)
- Re: AMBER: Sander minimization & dynamic question Carlos Simmerling (Mon Apr 04 2005 - 06:48:26 CDT)
- Re: AMBER: Sander minimization & dynamic question Andreas Svrcek-Seiler (Mon Apr 04 2005 - 07:01:32 CDT)
- AMBER: ff02EP + pol3 (2) Phineus Markwick (Mon Apr 04 2005 - 07:06:36 CDT)
- AMBER: emilia wu (Mon Apr 04 2005 - 09:11:48 CDT)
- AMBER: single-stranded poly(rC) simulation Kateryna Miroshnychenko (Mon Apr 04 2005 - 08:49:39 CDT)
- Re: AMBER: All the tests passed except prmtop and prepin... shuli (Mon Apr 04 2005 - 09:56:23 CDT)
- AMBER: force constant Unit used in TMD xhu1_at_memphis.edu (Mon Apr 04 2005 - 10:05:30 CDT)
- Re: AMBER: surface area Tim Meyer (Mon Apr 04 2005 - 10:38:12 CDT)
- Re: AMBER: force constant Unit used in TMD Carlos Simmerling (Mon Apr 04 2005 - 11:06:45 CDT)
- Re: AMBER: force constant Unit used in TMD xhu1_at_memphis.edu (Mon Apr 04 2005 - 11:33:01 CDT)
- Re: AMBER: force constant Unit used in TMD Viktor Hornak (Mon Apr 04 2005 - 11:53:23 CDT)
- Re: AMBER: force constant Unit used in TMD xhu1_at_memphis.edu (Mon Apr 04 2005 - 12:28:36 CDT)
- Re: AMBER: force constant Unit used in TMD Asim Okur (Mon Apr 04 2005 - 12:36:08 CDT)
- Re: AMBER: force constant Unit used in TMD xhu1_at_memphis.edu (Mon Apr 04 2005 - 12:59:02 CDT)
- AMBER: Compile Error on Running Amber on AMD opterons in the Linux-based clusters Wu Yingliang (Tue Apr 05 2005 - 01:18:11 CDT)
- Re: AMBER: David A. Case (Tue Apr 05 2005 - 01:06:34 CDT)
- Re: AMBER: ff02EP + pol3 (2) David A. Case (Tue Apr 05 2005 - 01:28:22 CDT)
- Re: AMBER: single-stranded poly(rC) simulation David A. Case (Tue Apr 05 2005 - 01:31:35 CDT)
- Re: Re: AMBER: emilia wu (Tue Apr 05 2005 - 01:43:49 CDT)
- RE: Re: AMBER: Wells, David H (Tue Apr 05 2005 - 02:13:56 CDT)
- AMBER: AMBER 8.0 problems with impose (tleap) on linux Guillermo Mulliert Carlín (Tue Apr 05 2005 - 01:35:17 CDT)
- Re: AMBER: Compile Error on Running Amber on AMD opterons in the Linux-based clusters Wei Zhang (Tue Apr 05 2005 - 02:49:38 CDT)
- AMBER: how to make a nonsymmetric box around the solute Lina Nilsson (Tue Apr 05 2005 - 02:56:44 CDT)
- AMBER: doble C and N terminal Stefano Federico Massimiliano Pieraccini (Stefano.Pieraccini) (Tue Apr 05 2005 - 04:45:58 CDT)
- Re: RE: Re: AMBER: emilia wu (Tue Apr 05 2005 - 07:25:42 CDT)
- Re: AMBER: Compile Error on Running Amber on AMD opterons in the Linux-based clusters David A. Case (Tue Apr 05 2005 - 10:31:15 CDT)
- AMBER: GB with Langevin dynamics problem Peter Varnai (Tue Apr 05 2005 - 11:04:15 CDT)
- Re: AMBER: GB with Langevin dynamics problem Carlos Simmerling (Tue Apr 05 2005 - 11:17:24 CDT)
- Re: AMBER: Compile Error on Running Amber on AMD opterons in the Linux-based clusters Bill Ross (Tue Apr 05 2005 - 11:26:34 CDT)
- Re: AMBER: GB with Langevin dynamics problem Andreas Svrcek-Seiler (Tue Apr 05 2005 - 12:04:08 CDT)
- AMBER: Re:Re:single-stranded poly(rC) simulation Kateryna Miroshnychenko (Tue Apr 05 2005 - 12:37:54 CDT)
- Re: AMBER: Re:Re:single-stranded poly(rC) simulation Thomas E. Cheatham, III (Tue Apr 05 2005 - 13:32:15 CDT)
- Re: AMBER: doble C and N terminal David A. Case (Tue Apr 05 2005 - 16:25:10 CDT)
- AMBER: Protein with structural ions Kara Wald (Tue Apr 05 2005 - 16:29:46 CDT)
- Re: AMBER: Protein with structural ions Oliver Hucke (Tue Apr 05 2005 - 16:42:29 CDT)
- Re: Re: AMBER: Protein with structural ions Yong Xu (Tue Apr 05 2005 - 23:34:55 CDT)
- Re: AMBER: AMBER 8.0 problems with impose (tleap) on linux David A. Case (Tue Apr 05 2005 - 23:48:14 CDT)
- Re: AMBER: Problems with protonate on Linux Atro Tossavainen (Wed Apr 06 2005 - 01:46:34 CDT)
- AMBER: FW: Amber installation Eric Mullins (Wed Apr 06 2005 - 10:36:20 CDT)
- Re: AMBER: Problems with protonate on Linux David A. Case (Wed Apr 06 2005 - 11:19:11 CDT)
- AMBER: a bimolecular reaction Eric Hu (Wed Apr 06 2005 - 12:14:23 CDT)
- Re: AMBER: FW: Amber installation David A. Case (Wed Apr 06 2005 - 16:39:42 CDT)
- AMBER: About Gaussian Key Words Katagiri Daisuke (Wed Apr 06 2005 - 22:10:12 CDT)
- AMBER: value of SALTCON mathew k varghese (Wed Apr 06 2005 - 23:29:01 CDT)
- AMBER: combine mdcrd using ptraj xueping (Wed Apr 06 2005 - 23:41:48 CDT)
- Re: AMBER: combine mdcrd using ptraj Asim Okur (Thu Apr 07 2005 - 00:17:57 CDT)
- Re: AMBER: combine mdcrd using ptraj xueping (Thu Apr 07 2005 - 01:59:54 CDT)
- Re: AMBER: combine mdcrd using ptraj Lihua Wang (Thu Apr 07 2005 - 02:45:18 CDT)
- RE: AMBER: About Gaussian Key Words Vineet Pande (Thu Apr 07 2005 - 03:36:04 CDT)
- Re: AMBER: combine mdcrd using ptraj xueping (Thu Apr 07 2005 - 04:13:59 CDT)
- AMBER: RADIOPT=1 Fabien Cailliez (Thu Apr 07 2005 - 08:19:09 CDT)
- Re: AMBER: Protein with structural ions Tim Meyer (Thu Apr 07 2005 - 09:05:15 CDT)
- AMBER: RE: system comparison for amber Ross Walker (Thu Apr 07 2005 - 11:41:06 CDT)
- Re: AMBER: RE: system comparison for amber Carlos Simmerling (Thu Apr 07 2005 - 12:00:18 CDT)
- AMBER: leap single precision Guanglei Cui (Thu Apr 07 2005 - 13:04:20 CDT)
- Re: AMBER: value of SALTCON David A. Case (Thu Apr 07 2005 - 13:25:50 CDT)
- Re: AMBER: About Gaussian Key Words (fwd) duan_list_at_albert.genomecenter.ucdavis.edu (Thu Apr 07 2005 - 18:09:25 CDT)
- AMBER: makeDIST_RST ERROR Y. Xu (Thu Apr 07 2005 - 21:14:19 CDT)
- AMBER: problems with "protonate" Kenley Barrett (Thu Apr 07 2005 - 21:27:07 CDT)
- AMBER: how to get the parameters for modified amino acid residue? ying xiong (Thu Apr 07 2005 - 22:31:14 CDT)
- Re: AMBER: Protein with structural ions Kara Di Giorgio (Fri Apr 08 2005 - 00:29:26 CDT)
- Re: Re: AMBER: Protein with structural ions Y. Xu (Fri Apr 08 2005 - 01:39:45 CDT)
- Re: AMBER: leap single precision Scott Brozell (Fri Apr 08 2005 - 02:07:31 CDT)
- AMBER: linit in mm-pbsa Fabien Cailliez (Fri Apr 08 2005 - 04:08:52 CDT)
- Re: AMBER: linit in mm-pbsa Arantxa Sanz (Fri Apr 08 2005 - 04:43:22 CDT)
- AMBER: Disulfide bond michael chen (Fri Apr 08 2005 - 09:36:41 CDT)
- Re: AMBER: Disulfide bond Carlos Simmerling (Fri Apr 08 2005 - 09:54:46 CDT)
- Re: AMBER: makeDIST_RST ERROR David A. Case (Fri Apr 08 2005 - 10:36:30 CDT)
- Re: AMBER: Protein with structural ions David A. Case (Fri Apr 08 2005 - 10:41:22 CDT)
- Re: AMBER: problems with "protonate" David A. Case (Fri Apr 08 2005 - 10:49:29 CDT)
- Re: AMBER: how to get the parameters for modified amino acid residue? FyD (Fri Apr 08 2005 - 11:03:34 CDT)
- Re: AMBER: Disulfide bond FyD (Fri Apr 08 2005 - 11:09:03 CDT)
- Re: AMBER: leap single precision Guanglei Cui (Fri Apr 08 2005 - 11:19:38 CDT)
- Re: AMBER: Protein with structural ions Kara Di Giorgio (Fri Apr 08 2005 - 11:30:26 CDT)
- AMBER: GB with Langevin dynamics problem 2 Peter Varnai (Fri Apr 08 2005 - 11:29:08 CDT)
- Re: AMBER: linit in mm-pbsa Ray Luo (Thu Apr 07 2005 - 23:30:06 CDT)
- AMBER: Announcment: Nucleic Acid Builder (NAB) version 5 is released David A. Case (Fri Apr 08 2005 - 11:52:54 CDT)
- Re: AMBER: Protein with structural ions David A. Case (Fri Apr 08 2005 - 12:29:44 CDT)
- Re: AMBER: GB with Langevin dynamics problem 2 David A. Case (Fri Apr 08 2005 - 12:48:27 CDT)
- Re: AMBER: GB with Langevin dynamics problem 2 Andreas Svrcek-Seiler (Fri Apr 08 2005 - 12:55:48 CDT)
- Re: AMBER: Protein with structural ions Kara Di Giorgio (Fri Apr 08 2005 - 13:55:41 CDT)
- Re: AMBER: GB with Langevin dynamics problem 2 Carlos Simmerling (Fri Apr 08 2005 - 14:03:14 CDT)
- AMBER: question about TGMD: vlimit exceeded for step xhu1_at_memphis.edu (Fri Apr 08 2005 - 15:31:10 CDT)
- Re: AMBER: question about TGMD: vlimit exceeded for step Viktor Hornak (Fri Apr 08 2005 - 15:47:40 CDT)
- Re: AMBER: question about TGMD: vlimit exceeded for step xhu1_at_memphis.edu (Fri Apr 08 2005 - 16:55:05 CDT)
- Re: AMBER: question about TGMD: vlimit exceeded for step Viktor Hornak (Fri Apr 08 2005 - 17:24:13 CDT)
- Re: AMBER: question about TGMD: vlimit exceeded for step xhu1_at_memphis.edu (Fri Apr 08 2005 - 18:04:17 CDT)
- AMBER: average structure-ptraj xueping (Sat Apr 09 2005 - 03:23:23 CDT)
- Re: AMBER: average structure-ptraj Carlos Simmerling (Sat Apr 09 2005 - 10:02:02 CDT)
- Re: AMBER: how to get the parameters for modified amino acid residue? David A. Case (Sun Apr 10 2005 - 00:29:09 CDT)
- Re: AMBER: GB with Langevin dynamics problem 2 David A. Case (Sun Apr 10 2005 - 00:34:48 CDT)
- Re: AMBER: leap single precision David A. Case (Sun Apr 10 2005 - 00:27:52 CDT)
- Re: AMBER: average structure-ptraj xueping (Sun Apr 10 2005 - 03:50:19 CDT)
- Re: AMBER: average structure-ptraj xueping (Sun Apr 10 2005 - 04:10:55 CDT)
- AMBER: A question on connecting residues in xleap Hwankyu Lee (Sun Apr 10 2005 - 11:54:55 CDT)
- RE: AMBER: A question on connecting residues in xleap Ross Walker (Sun Apr 10 2005 - 13:25:16 CDT)
- Re: AMBER: A question on connecting residues in xleap Hwankyu Lee (Sun Apr 10 2005 - 16:22:16 CDT)
- Re: AMBER: Protein with structural ions Kara Di Giorgio (Sun Apr 10 2005 - 22:05:08 CDT)
- Re: AMBER: Protein with structural ions David A. Case (Sun Apr 10 2005 - 23:04:52 CDT)
- AMBER: Warnings as a file Pavan Ghatty (Sun Apr 10 2005 - 23:37:21 CDT)
- Re: AMBER: Protein with structural ions Kara Di Giorgio (Sun Apr 10 2005 - 23:47:29 CDT)
- RE: AMBER: A question on connecting residues in xleap Ross Walker (Mon Apr 11 2005 - 00:00:34 CDT)
- Re: AMBER: Warnings as a file scopio (Mon Apr 11 2005 - 00:03:39 CDT)
- AMBER: Two question about dielectric constant ìÇ Îä (Mon Apr 11 2005 - 03:02:10 CDT)
- AMBER: rst file problems mathew k varghese (Mon Apr 11 2005 - 05:03:41 CDT)
- AMBER:FAD can't be minimized. zhli_2000_at_126.com (Mon Apr 11 2005 - 07:48:15 CDT)
- Re: AMBER: Two question about dielectric constant Carlos Simmerling (Mon Apr 11 2005 - 08:18:07 CDT)
- Re: AMBER: rst file problems Carlos Simmerling (Mon Apr 11 2005 - 08:22:41 CDT)
- Re: AMBER: A question on connecting residues in xleap Hwankyu Lee (Mon Apr 11 2005 - 09:49:47 CDT)
- Re: AMBER: Protein with structural ions David A. Case (Mon Apr 11 2005 - 09:50:28 CDT)
- Re: AMBER:FAD can't be minimized. David A. Case (Mon Apr 11 2005 - 09:58:45 CDT)
- Re: AMBER: Protein with structural ions Kara Di Giorgio (Mon Apr 11 2005 - 10:40:45 CDT)
- Re: AMBER: Two question about dielectric constant Lihua Wang (Mon Apr 11 2005 - 12:04:24 CDT)
- RE: AMBER: A question on connecting residues in xleap Ross Walker (Mon Apr 11 2005 - 12:13:15 CDT)
- AMBER: GB with Langevin dynamics - solution Peter Varnai (Mon Apr 11 2005 - 12:18:13 CDT)
- AMBER: MM_PBSA error Xin Hu (Mon Apr 11 2005 - 13:46:30 CDT)
- Re: AMBER: MM_PBSA error Holger Gohlke (Mon Apr 11 2005 - 15:49:37 CDT)
- AMBER: breaking symmetry in minimization Stern, Julie (Mon Apr 11 2005 - 15:58:53 CDT)
- Re: AMBER: problems with "protonate" Kenley Barrett (Mon Apr 11 2005 - 16:20:47 CDT)
- Re: AMBER: breaking symmetry in minimization Bill Ross (Mon Apr 11 2005 - 17:25:25 CDT)
- Re: AMBER: MM_PBSA error Xin Hu (Mon Apr 11 2005 - 17:33:51 CDT)
- Re: AMBER: problems with "protonate" Bill Ross (Mon Apr 11 2005 - 17:33:17 CDT)
- Re: AMBER: About Gaussian Key Words (fwd) Daisuke Katagiri (Mon Apr 11 2005 - 19:03:36 CDT)
- AMBER: Fail to load the trajectory file. Jinzhi Lei (Mon Apr 11 2005 - 19:36:34 CDT)
- Re: AMBER: Fail to load the trajectory file. Bill Ross (Mon Apr 11 2005 - 19:41:52 CDT)
- Re: Re: AMBER: Fail to load the trajectory file. Jinzhi Lei (Mon Apr 11 2005 - 20:00:14 CDT)
- Re: Re: AMBER: Fail to load the trajectory file. Bill Ross (Mon Apr 11 2005 - 20:11:19 CDT)
- Re: AMBER: problems with "protonate" David A. Case (Mon Apr 11 2005 - 20:45:47 CDT)
- Re: AMBER: Fail to load the trajectory file. Thomas E. Cheatham, III (Mon Apr 11 2005 - 21:08:11 CDT)
- Re: AMBER: rst file problems mathew k varghese (Mon Apr 11 2005 - 22:13:21 CDT)
- Re: Re: Re: AMBER: Fail to load the trajectory file. Jinzhi Lei (Mon Apr 11 2005 - 20:53:50 CDT)
- Re: AMBER: MM_PBSA error Holger Gohlke (Tue Apr 12 2005 - 01:30:24 CDT)
- Re: AMBER: rst file problems Carlos Simmerling (Tue Apr 12 2005 - 08:39:02 CDT)
- AMBER: peptide side chain modification with LEAP Hannes Barsch (Tue Apr 12 2005 - 09:19:53 CDT)
- AMBER: rdparm Tim Meyer (Tue Apr 12 2005 - 09:23:55 CDT)
- AMBER: implementing AMBER in NAMD Lina Nilsson (Thu Apr 28 2005 - 09:23:16 CDT)
- AMBER: nscm Ilyas Yildirim (Tue Apr 12 2005 - 09:55:50 CDT)
- AMBER: Does anybody know the experimental solvation free energies of Efavirenz and some other DPC drugs Ye MEI (Tue Apr 12 2005 - 10:19:37 CDT)
- RE: AMBER: peptide side chain modification with LEAP Ross Walker (Tue Apr 12 2005 - 10:45:23 CDT)
- RE: AMBER: Protein with structural ions Kara Di Giorgio (Tue Apr 12 2005 - 10:51:32 CDT)
- Re: AMBER: nscm David A. Case (Tue Apr 12 2005 - 10:55:58 CDT)
- Re: AMBER: Protein with structural ions Carlos Simmerling (Tue Apr 12 2005 - 11:09:48 CDT)
- AMBER: MM_PBSA problem Xin Hu (Tue Apr 12 2005 - 11:09:36 CDT)
- Re: AMBER: problems with "protonate" Bill Ross (Tue Apr 12 2005 - 11:14:27 CDT)
- Re: AMBER: MM_PBSA problem Nelson Fonseca (Tue Apr 12 2005 - 11:20:53 CDT)
- Re: AMBER: peptide side chain modification with LEAP Bill Ross (Tue Apr 12 2005 - 11:22:40 CDT)
- AMBER: Silicon related parameters luckyang_at_gmail.com (Tue Apr 12 2005 - 11:38:35 CDT)
- Re: AMBER: nscm duan_list_at_albert.genomecenter.ucdavis.edu (Tue Apr 12 2005 - 11:45:49 CDT)
- Re: AMBER: Protein with structural ions Kara Di Giorgio (Tue Apr 12 2005 - 11:59:40 CDT)
- AMBER: ibelly not working Stern, Julie (Tue Apr 12 2005 - 11:52:56 CDT)
- Re: AMBER: GB with Langevin dynamics - solution David A. Case (Tue Apr 12 2005 - 11:56:34 CDT)
- Re: AMBER: a bimolecular reaction David A. Case (Tue Apr 12 2005 - 11:59:07 CDT)
- Re: AMBER: MM_PBSA problem Fabien Cailliez (Tue Apr 12 2005 - 11:50:14 CDT)
- AMBER: vdw or center box dimensions, periodicity, and the jagged edge Stern, Julie (Tue Apr 12 2005 - 12:30:38 CDT)
- Re: AMBER: GB with Langevin dynamics - solution Peter Varnai (Tue Apr 12 2005 - 12:39:54 CDT)
- AMBER: Protein With Structural Ions Kara Di Giorgio (Tue Apr 12 2005 - 12:47:52 CDT)
- AMBER: No. of Snapshots in MM/GB/SA Sagar D Khare (Tue Apr 12 2005 - 12:48:44 CDT)
- Re: AMBER: a bimolecular reaction duan_list_at_albert.genomecenter.ucdavis.edu (Tue Apr 12 2005 - 13:00:14 CDT)
- Re: AMBER: ibelly not working Bill Ross (Tue Apr 12 2005 - 13:11:28 CDT)
- Re: AMBER: No. of Snapshots in MM/GB/SA Guangyu Sun (Tue Apr 12 2005 - 13:17:35 CDT)
- Re: AMBER: MM_PBSA problem Xin Hu (Tue Apr 12 2005 - 14:31:45 CDT)
- Re: AMBER: MM_PBSA problem Xin Hu (Tue Apr 12 2005 - 14:36:07 CDT)
- Re: AMBER: rst file problems Furse, Kristina Elisabet (Tue Apr 12 2005 - 15:39:35 CDT)
- Re: Re: AMBER: Fail to load the trajectory file. Jinzhi Lei (Tue Apr 12 2005 - 15:54:52 CDT)
- Re: AMBER: MM_PBSA problem Nelson Fonseca (Tue Apr 12 2005 - 16:15:00 CDT)
- Re: AMBER: a bimolecular reaction Eric Hu (Tue Apr 12 2005 - 18:50:58 CDT)
- AMBER: ptraj, hbond problem Joseph W.Toporowski (Tue Apr 12 2005 - 19:07:35 CDT)
- Re: AMBER: a bimolecular reaction Yong Duan (Tue Apr 12 2005 - 19:22:51 CDT)
- AMBER: MM-PBSA in protein-Zn-ligand system Yong Xu (Tue Apr 12 2005 - 20:37:55 CDT)
- Re: AMBER: MM-PBSA in protein-Zn-ligand system Kara Di Giorgio (Tue Apr 12 2005 - 21:50:20 CDT)
- Re: Re: AMBER: MM-PBSA in protein-Zn-ligand system Yong Xu (Tue Apr 12 2005 - 22:17:00 CDT)
- AMBER: freee energy calculation without minimised structure S.Sundar Raman (Wed Apr 13 2005 - 02:00:08 CDT)
- RE: AMBER: freee energy calculation without minimised structure Yong Duan (Wed Apr 13 2005 - 02:40:26 CDT)
- AMBER: Watson-Crick restraints YoungJin Cho (Wed Apr 13 2005 - 09:43:22 CDT)
- Re: AMBER: MM_PBSA problem David A. Case (Wed Apr 13 2005 - 10:23:17 CDT)
- Re: AMBER: MM_PBSA problem Xin Hu (Wed Apr 13 2005 - 10:28:17 CDT)
- Re: AMBER: MM_PBSA problem Xin Hu (Wed Apr 13 2005 - 12:49:05 CDT)
- Re: AMBER: a bimolecular reaction Eric Hu (Wed Apr 13 2005 - 13:08:03 CDT)
- AMBER: what is wrong with my amber job or installation? Amber (Wed Apr 13 2005 - 13:57:56 CDT)
- RE: AMBER: a bimolecular reaction Yong Duan (Wed Apr 13 2005 - 14:51:08 CDT)
- RE: AMBER: what is wrong with my amber job or installation? Ross Walker (Wed Apr 13 2005 - 15:46:01 CDT)
- AMBER: Formatting a restraint file Kara Wald (Wed Apr 13 2005 - 15:57:24 CDT)
- Re: AMBER: Formatting a restraint file Carlos Simmerling (Wed Apr 13 2005 - 16:18:54 CDT)
- AMBER: xleap, lib file question opitz_at_che.udel.edu (Wed Apr 13 2005 - 16:36:51 CDT)
- RE: AMBER: xleap, lib file question Ross Walker (Wed Apr 13 2005 - 17:07:04 CDT)
- AMBER: About NAB Ilyas Yildirim (Wed Apr 13 2005 - 19:19:32 CDT)
- Re: AMBER: Formatting a restraint file Kara Di Giorgio (Wed Apr 13 2005 - 19:31:25 CDT)
- Re: AMBER: Formatting a restraint file Furse, Kristina Elisabet (Thu Apr 14 2005 - 00:06:49 CDT)
- Re: AMBER: About NAB David A. Case (Thu Apr 14 2005 - 00:10:51 CDT)
- Re: AMBER: Watson-Crick restraints David A. Case (Thu Apr 14 2005 - 00:37:16 CDT)
- AMBER: solvate water box bybaker_at_itsa.ucsf.edu (Thu Apr 14 2005 - 01:42:21 CDT)
- AMBER: Antechamber -reorders atom sequence Austin B. Yongye (Thu Apr 14 2005 - 07:05:09 CDT)
- AMBER: Warning: Error opening "New" file from subroutine OPNMRG in pmemd Fabien Cailliez (Thu Apr 14 2005 - 08:05:32 CDT)
- Re: AMBER: Antechamber -reorders atom sequence David A. Case (Thu Apr 14 2005 - 09:53:17 CDT)
- Re: AMBER: Formatting a restraint file Kara Di Giorgio (Thu Apr 14 2005 - 10:26:17 CDT)
- Re: AMBER: Formatting a restraint file Carlos Simmerling (Thu Apr 14 2005 - 11:13:49 CDT)
- Re: AMBER: Formatting a restraint file David A. Case (Thu Apr 14 2005 - 11:28:23 CDT)
- Re: AMBER: Formatting a restraint file Kara Di Giorgio (Thu Apr 14 2005 - 11:25:18 CDT)
- Re: AMBER: solvate water box David A. Case (Thu Apr 14 2005 - 11:30:11 CDT)
- Re: AMBER: About NAB Andreas Svrcek-Seiler (Thu Apr 14 2005 - 12:03:49 CDT)
- AMBER: periodic boundaries and repeating structure Stern, Julie (Thu Apr 14 2005 - 12:55:09 CDT)
- AMBER: antechamber for cyano group nlxc (Thu Apr 14 2005 - 13:03:35 CDT)
- Re: AMBER: periodic boundaries and repeating structure Bill Ross (Thu Apr 14 2005 - 13:13:48 CDT)
- AMBER: Sander/Mpich2 error with mpd_singinit Joe Nolan (Thu Apr 14 2005 - 15:00:09 CDT)
- Re: AMBER: Formatting a restraint file Furse, Kristina Elisabet (Thu Apr 14 2005 - 15:02:20 CDT)
- Re: AMBER: Sander/Mpich2 error with mpd_singinit David LeBard (Thu Apr 14 2005 - 15:17:54 CDT)
- AMBER: small target pressure in constant pressure dynamics Eric Hu (Thu Apr 14 2005 - 16:37:49 CDT)
- Re: AMBER: small target pressure in constant pressure dynamics Thomas E. Cheatham, III (Thu Apr 14 2005 - 17:09:18 CDT)
- Re: AMBER: small target pressure in constant pressure dynamics Eric Hu (Thu Apr 14 2005 - 17:26:23 CDT)
- AMBER: big fluctuation in MM-PBSA/GA Eric Hu (Thu Apr 14 2005 - 17:54:05 CDT)
- Re: AMBER: big fluctuation in MM-PBSA/GA David A. Case (Thu Apr 14 2005 - 18:33:00 CDT)
- RE: AMBER: small target pressure in constant pressure dynamics Yong Duan (Thu Apr 14 2005 - 18:30:09 CDT)
- Re: AMBER: big fluctuation in MM-PBSA/GA Thomas E. Cheatham, III (Thu Apr 14 2005 - 18:53:48 CDT)
- Re: AMBER: About NAB Ilyas Yildirim (Thu Apr 14 2005 - 19:19:14 CDT)
- Re: AMBER: big fluctuation in MM-PBSA/GA Eric Hu (Thu Apr 14 2005 - 19:21:40 CDT)
- Re: AMBER: About NAB David A. Case (Thu Apr 14 2005 - 20:33:26 CDT)
- AMBER: parameters in gaff.dat Lihua Wang (Fri Apr 15 2005 - 00:21:29 CDT)
- Re: AMBER: parameters in gaff.dat David A. Case (Fri Apr 15 2005 - 01:02:48 CDT)
- AMBER: how to make the prepin file for dimer and clusters of organic molecule in Amber7 Ananda Rama Krishnan Selvaraj (Fri Apr 15 2005 - 03:11:27 CDT)
- Re: AMBER: how to make the prepin file for dimer and clusters of organic molecule in Amber7 David A. Case (Fri Apr 15 2005 - 10:25:56 CDT)
- AMBER: carnal problem Ed Pate (Fri Apr 15 2005 - 11:15:54 CDT)
- Re: AMBER: Antechamber -reorders atom sequence FyD (Fri Apr 15 2005 - 11:10:27 CDT)
- AMBER: SollvateBox with ethanol Huaer XC (Fri Apr 15 2005 - 11:21:01 CDT)
- AMBER: gaff atom types Claudio Morgado (Fri Apr 15 2005 - 12:11:18 CDT)
- Re: AMBER: carnal problem Bill Ross (Fri Apr 15 2005 - 12:32:02 CDT)
- Re: AMBER: SollvateBox with ethanol Guanglei Cui (Fri Apr 15 2005 - 12:50:20 CDT)
- Re: AMBER: carnal problem Ed Pate (Fri Apr 15 2005 - 13:10:37 CDT)
- Re: AMBER: big fluctuation in MM-PBSA/GA Xin Hu (Fri Apr 15 2005 - 13:17:28 CDT)
- Re: AMBER: carnal problem Bill Ross (Fri Apr 15 2005 - 13:42:16 CDT)
- Re: AMBER: parameters in gaff.dat Lihua Wang (Fri Apr 15 2005 - 13:50:04 CDT)
- Re: AMBER: carnal problem Ed Pate (Fri Apr 15 2005 - 13:53:37 CDT)
- Re: AMBER: big fluctuation in MM-PBSA/GA Eric Hu (Fri Apr 15 2005 - 13:59:09 CDT)
- Re: AMBER: carnal problem Bill Ross (Fri Apr 15 2005 - 14:20:03 CDT)
- Re: AMBER: carnal problem Ed Pate (Fri Apr 15 2005 - 14:30:26 CDT)
- Re: AMBER: Antechamber -reorders atom sequence Austin B. Yongye (Fri Apr 15 2005 - 15:12:40 CDT)
- Re: AMBER: parameters in gaff.dat David A. Case (Fri Apr 15 2005 - 15:31:56 CDT)
- Re: AMBER: big fluctuation in MM-PBSA/GA Xin Hu (Fri Apr 15 2005 - 15:53:02 CDT)
- AMBER: RESP charges with Gaussian03 and Amber Delon Wilson (Fri Apr 15 2005 - 15:57:19 CDT)
- AMBER: the restart of replica exchange method (REM) simulations in AMBER8 Scott E. Boesch (Fri Apr 15 2005 - 16:24:24 CDT)
- Re: AMBER: big fluctuation in MM-PBSA/GA Eric Hu (Fri Apr 15 2005 - 16:42:45 CDT)
- Re: AMBER: RESP charges with Gaussian03 and Amber FyD (Fri Apr 15 2005 - 17:16:05 CDT)
- Re: AMBER: the restart of replica exchange method (REM) simulations in AMBER8 Carlos Simmerling (Sat Apr 16 2005 - 07:42:37 CDT)
- AMBER: amber8/antechamber installation problem Xin Hu (Sat Apr 16 2005 - 20:39:07 CDT)
- Re: AMBER: amber8/antechamber installation problem David A. Case (Sun Apr 17 2005 - 16:38:51 CDT)
- AMBER: about equilibration dynamics S.Sundar Raman (Mon Apr 18 2005 - 02:18:10 CDT)
- AMBER: ATTN REVISION ÂÀº£æà (Mon Apr 18 2005 - 03:19:46 CDT)
- AMBER: dielectric constant Nina Fischer (Mon Apr 18 2005 - 03:22:34 CDT)
- AMBER:Bond lengths aren't reasonable after minimisation. zhli_2000_at_126.com (Mon Apr 18 2005 - 05:39:22 CDT)
- AMBER: Rep Exch. suggestion Brent Krueger (Mon Apr 18 2005 - 06:56:33 CDT)
- AMBER: RESP charges with Gaussian03 and Amber Delon Wilson (Mon Apr 18 2005 - 08:19:16 CDT)
- Re: AMBER: Rep Exch. suggestion Guanglei Cui (Mon Apr 18 2005 - 08:37:37 CDT)
- Re: AMBER: dielectric constant David A. Case (Mon Apr 18 2005 - 10:00:41 CDT)
- Re: AMBER: ATTN REVISION David A. Case (Mon Apr 18 2005 - 09:57:58 CDT)
- AMBER: langevin, GB and simulated annealing? pascal.baillod_at_epfl.ch (Mon Apr 18 2005 - 10:14:08 CDT)
- Re: AMBER: langevin, GB and simulated annealing? Adrian E. Roitberg (Mon Apr 18 2005 - 10:21:04 CDT)
- Re: AMBER: langevin, GB and simulated annealing? Carlos Simmerling (Mon Apr 18 2005 - 10:36:19 CDT)
- RE: AMBER:Bond lengths aren't reasonable after minimisation. Ross Walker (Mon Apr 18 2005 - 11:55:54 CDT)
- AMBER: Dual Xeon EM64T Intel Fortran Compiler Shekter, Lee (Mon Apr 18 2005 - 13:17:58 CDT)
- AMBER: local dielectric constant Xavier Deupi (Mon Apr 18 2005 - 20:17:40 CDT)
- AMBER: Re: Re: AMBER: ATTN REVISION ÂÀº£æà (Mon Apr 18 2005 - 20:38:02 CDT)
- AMBER: RESP charges - multiple conformations Austin B. Yongye (Mon Apr 18 2005 - 21:54:20 CDT)
- Re: AMBER: Re: Re: AMBER: ATTN REVISION David A. Case (Mon Apr 18 2005 - 23:37:13 CDT)
- AMBER: New parametrs Maciej (Tue Apr 19 2005 - 00:38:51 CDT)
- Re: AMBER: RESP charges - multiple conformations FyD (Tue Apr 19 2005 - 00:44:04 CDT)
- AMBER: GAFF: H type on carbon bearing a cyano group Claudio Morgado (Tue Apr 19 2005 - 03:34:12 CDT)
- AMBER: Amber8 installation on IBM (power4) with SUSE 9.1 Linux (IBM XLF compiler) Soo Joo (Tue Apr 19 2005 - 04:36:26 CDT)
- AMBER: solvent accessible surface area John (Tue Apr 19 2005 - 05:45:40 CDT)
- AMBER: Gibbs compilation problem Maciej (Tue Apr 19 2005 - 06:36:52 CDT)
- RE: AMBER: solvent accessible surface area John (Tue Apr 19 2005 - 07:22:04 CDT)
- Re: AMBER: RESP charges - multiple conformations Austin B. Yongye (Tue Apr 19 2005 - 07:43:45 CDT)
- AMBER: The effect appling paches Yagi Toru (Tue Apr 19 2005 - 08:11:54 CDT)
- Re: AMBER: amber8/antechamber installation problem Xin Hu (Tue Apr 19 2005 - 09:14:41 CDT)
- AMBER: a problem with mm_pbsa Ye MEI (Tue Apr 19 2005 - 09:23:01 CDT)
- Re: AMBER: RESP charges - multiple conformations FyD (Tue Apr 19 2005 - 09:26:48 CDT)
- Re: AMBER: Amber8 installation on IBM (power4) with SUSE 9.1 Linux (IBM XLF compiler) David A. Case (Tue Apr 19 2005 - 09:40:30 CDT)
- Re: AMBER: solvent accessible surface area David A. Case (Tue Apr 19 2005 - 09:43:24 CDT)
- Re: AMBER: a problem with mm_pbsa Xin Hu (Tue Apr 19 2005 - 09:44:35 CDT)
- Re: AMBER: Gibbs compilation problem David A. Case (Tue Apr 19 2005 - 09:50:12 CDT)
- AMBER: Amber compilation problem David A. Case (Tue Apr 19 2005 - 09:59:27 CDT)
- Re: AMBER: The effect appling paches David A. Case (Tue Apr 19 2005 - 10:01:58 CDT)
- Re: AMBER: solvent accessible surface area Ray Luo (Mon Apr 18 2005 - 21:12:54 CDT)
- RE: AMBER: Re: Re: AMBER: ATTN REVISION Junmei Wang (Tue Apr 19 2005 - 11:08:58 CDT)
- AMBER: Non-Bonded Cutoff vs PME Vineet Pande (Tue Apr 19 2005 - 11:13:26 CDT)
- RE: AMBER: gaff atom types Junmei Wang (Tue Apr 19 2005 - 11:18:44 CDT)
- RE: AMBER: antechamber for cyano group Junmei Wang (Tue Apr 19 2005 - 11:28:59 CDT)
- AMBER: langevin, GB and simulated annealing - 2 pascal.baillod_at_epfl.ch (Tue Apr 19 2005 - 16:07:23 CDT)
- Re: AMBER: Non-Bonded Cutoff vs PME David A. Case (Tue Apr 19 2005 - 16:35:51 CDT)
- Re: AMBER: Non-Bonded Cutoff vs PME Thomas E. Cheatham, III (Tue Apr 19 2005 - 18:47:10 CDT)
- Re: AMBER: langevin, GB and simulated annealing - 2 David A. Case (Tue Apr 19 2005 - 19:04:56 CDT)
- Re: AMBER: ATTN REVISION lv haiting (Tue Apr 19 2005 - 21:08:14 CDT)
- AMBER: Yong Xu (Tue Apr 19 2005 - 21:57:44 CDT)
- Re: AMBER: langevin, GB and simulated annealing - 2 Andreas Svrcek-Seiler (Wed Apr 20 2005 - 03:03:56 CDT)
- AMBER: tleap and water thenmalar (Wed Apr 20 2005 - 03:13:58 CDT)
- Re: AMBER: Non-Bonded Cutoff vs PME Vineet Pande (Wed Apr 20 2005 - 04:17:20 CDT)
- AMBER: GB and mm_pbsa.pl Nelson Fonseca (Wed Apr 20 2005 - 06:48:48 CDT)
- AMBER: interaction between residues Stefano Federico Massimiliano Pieraccini (Stefano.Pieraccini) (Wed Apr 20 2005 - 09:27:31 CDT)
- RE: AMBER: ATTN REVISION Junmei Wang (Wed Apr 20 2005 - 09:31:47 CDT)
- Re: AMBER: tleap and water Thomas E. Cheatham, III (Wed Apr 20 2005 - 09:28:33 CDT)
- AMBER: Re: RE: AMBER:Bond lengths aren't reasonable after minimisation. zhli_2000 (Wed Apr 20 2005 - 08:52:18 CDT)
- Re: AMBER: Non-Bonded Cutoff vs PME Thomas E. Cheatham, III (Wed Apr 20 2005 - 09:53:38 CDT)
- Re: AMBER: GB and mm_pbsa.pl David A. Case (Wed Apr 20 2005 - 10:12:56 CDT)
- Large files to AMBER, RE: AMBER: Re: RE: AMBER:Bond lengths aren't reasonable after minimisation. Yong Duan (Wed Apr 20 2005 - 10:16:55 CDT)
- Re: AMBER: GB and mm_pbsa.pl Nelson Fonseca (Wed Apr 20 2005 - 11:05:12 CDT)
- AMBER: Re: RE: AMBER:Bond lengths aren't reasonable after minimisation. Ross Walker (Wed Apr 20 2005 - 12:04:03 CDT)
- Re: AMBER: GB and mm_pbsa.pl David A. Case (Wed Apr 20 2005 - 12:18:35 CDT)
- AMBER: ibelly not working Stern, Julie (Wed Apr 20 2005 - 14:40:28 CDT)
- AMBER: intramolecular nonbonded interactions in AMBER force field John Silvio Vieceli (Wed Apr 20 2005 - 17:06:48 CDT)
- Re: AMBER: intramolecular nonbonded interactions in AMBER force field Carlos Simmerling (Wed Apr 20 2005 - 17:28:08 CDT)
- RE: AMBER: intramolecular nonbonded interactions in AMBER force field Ross Walker (Wed Apr 20 2005 - 17:33:41 CDT)
- AMBER: about run time in GB and PB Yong Xu (Thu Apr 21 2005 - 03:06:27 CDT)
- Re: AMBER: about run time in GB and PB Phineus Markwick (Thu Apr 21 2005 - 03:26:26 CDT)
- Re: AMBER: intramolecular nonbonded interactions in AMBER force field Vineet Pande (Thu Apr 21 2005 - 03:33:19 CDT)
- Re: Re: AMBER: about run time in GB and PB Yong Xu (Thu Apr 21 2005 - 03:55:41 CDT)
- RE: AMBER: about run time in GB and PB Yong Duan (Thu Apr 21 2005 - 03:57:32 CDT)
- Re: AMBER: about run time in GB and PB Phineus Markwick (Thu Apr 21 2005 - 05:15:57 CDT)
- AMBER: On the role of neutralizing ions in GB-MD and GBSA Wu Yingliang (Thu Apr 21 2005 - 05:26:05 CDT)
- AMBER: On the role of neutralizing ions in GB-MD and GBSA Wu Yingliang (Thu Apr 21 2005 - 05:16:29 CDT)
- AMBER: Nose-Hoover thermostat Sam Moors (Thu Apr 21 2005 - 07:40:44 CDT)
- Re: AMBER: intramolecular nonbonded interactions in AMBER force field Carlos Simmerling (Thu Apr 21 2005 - 07:50:46 CDT)
- Re: RE: AMBER: about run time in GB and PB Yong Xu (Thu Apr 21 2005 - 08:17:19 CDT)
- Re: AMBER: intramolecular nonbonded interactions in AMBER force field Vineet Pande (Thu Apr 21 2005 - 08:26:30 CDT)
- Re: AMBER: about run time in GB and PB Phineus Markwick (Thu Apr 21 2005 - 09:10:20 CDT)
- AMBER: re: about run time in GB and PB Phineus Markwick (Thu Apr 21 2005 - 09:29:33 CDT)
- Re: AMBER: intramolecular nonbonded interactions in AMBER force field Thomas E. Cheatham, III (Thu Apr 21 2005 - 09:50:24 CDT)
- AMBER: Moil-view and Quicktime movie Steve Seibold (Thu Apr 21 2005 - 09:55:01 CDT)
- Re: AMBER: On the role of neutralizing ions in GB-MD and GBSA David A. Case (Thu Apr 21 2005 - 10:22:37 CDT)
- Re: AMBER: ibelly not working David A. Case (Thu Apr 21 2005 - 10:36:40 CDT)
- Re: AMBER: Nose-Hoover thermostat David A. Case (Thu Apr 21 2005 - 10:44:13 CDT)
- Re: AMBER: intramolecular nonbonded interactions in AMBER force field David A. Case (Thu Apr 21 2005 - 10:42:10 CDT)
- AMBER: Sander bomb - atom out of bounds Joe Nolan (Thu Apr 21 2005 - 12:46:01 CDT)
- RE: AMBER: Sander bomb - atom out of bounds Ross Walker (Thu Apr 21 2005 - 13:02:18 CDT)
- AMBER: problem with belly calculation restart Ed Pate (Thu Apr 21 2005 - 19:28:59 CDT)
- Re: Re: AMBER: On the role of neutralizing ions in GB-MD and GBSA Wu Yingliang (Thu Apr 21 2005 - 21:50:09 CDT)
- Re: AMBER: about run time in GB and PB Yong Xu (Fri Apr 22 2005 - 03:19:05 CDT)
- AMBER: mean structure calculation mmv (Fri Apr 22 2005 - 04:17:20 CDT)
- AMBER: PB Bomb in circle(): Stored surface points over limit Nelson Fonseca (Fri Apr 22 2005 - 07:56:57 CDT)
- Re: AMBER: intramolecular nonbonded interactions in AMBER force field Guanglei Cui (Fri Apr 22 2005 - 08:52:53 CDT)
- AMBER: writing MASKs Sagar D Khare (Fri Apr 22 2005 - 09:58:24 CDT)
- RE: AMBER: writing MASKs Vineet Pande (Fri Apr 22 2005 - 10:45:43 CDT)
- AMBER: strange VDWAALS and EEL energies calculated by pbsa Fabien Cailliez (Fri Apr 22 2005 - 10:56:41 CDT)
- Re: AMBER: strange VDWAALS and EEL energies calculated by pbsa Carlos Simmerling (Fri Apr 22 2005 - 11:05:42 CDT)
- Re: AMBER: strange VDWAALS and EEL energies calculated by pbsa David A. Case (Fri Apr 22 2005 - 11:12:15 CDT)
- AMBER: Induced dipole in AMBER8 Cenk Andac (Fri Apr 22 2005 - 11:57:56 CDT)
- Re: AMBER: strange VDWAALS and EEL energies calculated by pbsa Ray Luo (Thu Apr 21 2005 - 07:18:17 CDT)
- AMBER: Amber Installation pmullins (Fri Apr 22 2005 - 13:28:34 CDT)
- Re: AMBER: Amber Installation David A. Case (Fri Apr 22 2005 - 14:14:01 CDT)
- AMBER: Calculate vdw parameters for alkaline earth metal ions Kenley Barrett (Fri Apr 22 2005 - 17:19:23 CDT)
- Re: AMBER: Calculate vdw parameters for alkaline earth metal ions Bill Ross (Fri Apr 22 2005 - 17:48:15 CDT)
- Re: AMBER: Induced dipole in AMBER8 David A. Case (Fri Apr 22 2005 - 20:23:41 CDT)
- AMBER: Problem when converting AMBER trajectories to CHARMM format Chen Hu (Sat Apr 23 2005 - 17:20:56 CDT)
- Re: AMBER: Problem when converting AMBER trajectories to CHARMM format Thomas E. Cheatham, III (Sat Apr 23 2005 - 18:33:48 CDT)
- AMBER: serial and parallel Aknb (Sun Apr 24 2005 - 06:35:37 CDT)
- AMBER: coordinates translation Ye MEI (Sun Apr 24 2005 - 11:26:39 CDT)
- RE: AMBER: serial and parallel Ross Walker (Sun Apr 24 2005 - 13:49:38 CDT)
- Re: AMBER: coordinates translation Jack Lei (Sun Apr 24 2005 - 18:51:16 CDT)
- AMBER: AMBER Test Error tpatko (Sun Apr 24 2005 - 19:31:42 CDT)
- AMBER: Re: AMBER Test Error (Follow Up) tpatko (Sun Apr 24 2005 - 19:55:18 CDT)
- AMBER: How to deal with the Non-standard residue lv haiting (Mon Apr 25 2005 - 03:18:08 CDT)
- AMBER: the restarting error zhli_2000_at_126.com (Mon Apr 25 2005 - 09:08:02 CDT)
- Re: AMBER: the restarting error Guanglei Cui (Mon Apr 25 2005 - 09:37:50 CDT)
- AMBER: Free energy pertubation (thermodynamic intergration) mrbroad_at_ilstu.edu (Mon Apr 25 2005 - 11:20:35 CDT)
- Re: AMBER: Free energy pertubation (thermodynamic intergration) Sichun Yang (Mon Apr 25 2005 - 11:55:16 CDT)
- AMBER: radius parameter for F atom Ye MEI (Mon Apr 25 2005 - 12:05:06 CDT)
- Re: AMBER: Induced dipole in AMBER8 Cenk Andac (Mon Apr 25 2005 - 14:00:17 CDT)
- Re: AMBER: How to deal with the Non-standard residue FyD (Mon Apr 25 2005 - 15:07:33 CDT)
- Re: AMBER: Free energy pertubation (thermodynamic intergration) Ilyas Yildirim (Mon Apr 25 2005 - 15:43:36 CDT)
- AMBER: mm_pbsa problem Husni Fattayer (Mon Apr 25 2005 - 15:59:22 CDT)
- Re: AMBER: radius parameter for F atom scopio (Mon Apr 25 2005 - 20:36:16 CDT)
- AMBER: A problem in TI approach - test case: meth2eth and eth2meth Ilyas Yildirim (Mon Apr 25 2005 - 20:47:19 CDT)
- AMBER: Free energy Maciej (Tue Apr 26 2005 - 02:01:16 CDT)
- AMBER: Re:Gibbs compilation problem Maciej (Tue Apr 26 2005 - 02:05:31 CDT)
- Re: AMBER: A problem in TI approach - test case: meth2eth and eth2meth Thomas Steinbrecher (Tue Apr 26 2005 - 03:37:01 CDT)
- AMBER: langevin, GB and simulated annealing - 3 pascal.baillod_at_epfl.ch (Tue Apr 26 2005 - 05:37:16 CDT)
- AMBER: AMBER Test Anthony Cruz (Tue Apr 26 2005 - 05:36:27 CDT)
- Re: AMBER: the restarting error zhli_2000_at_126.com (Tue Apr 26 2005 - 05:54:44 CDT)
- Re: Re: AMBER: radius parameter for F atom Ye MEI (Tue Apr 26 2005 - 08:30:07 CDT)
- Re: AMBER: langevin, GB and simulated annealing - 3 David Case (Tue Apr 26 2005 - 09:06:08 CDT)
- Re: AMBER: AMBER Test David Case (Tue Apr 26 2005 - 09:12:05 CDT)
- AMBER: langevin, GB and simulated annealing - 4 pascal.baillod_at_epfl.ch (Tue Apr 26 2005 - 10:23:20 CDT)
- Re: AMBER: langevin, GB and simulated annealing - 4 David Case (Tue Apr 26 2005 - 10:44:32 CDT)
- AMBER: How to restart MM_PBSA or doing the statistics only Xin Hu (Tue Apr 26 2005 - 11:00:05 CDT)
- AMBER: doesn't work in pmemd, and no output in parallel simulations Hwankyu Lee (Tue Apr 26 2005 - 15:35:26 CDT)
- AMBER: error in pbsa calculation mingche Pan (Tue Apr 26 2005 - 16:15:13 CDT)
- Re: AMBER: doesn't work in pmemd, and no output in parallel simulations Robert Duke (Tue Apr 26 2005 - 16:24:04 CDT)
- Re: AMBER: error in pbsa calculation Ray Luo (Tue Apr 26 2005 - 16:39:50 CDT)
- Re: AMBER: doesn't work in pmemd, and no output in parallel simulations Hwankyu Lee (Tue Apr 26 2005 - 21:46:09 CDT)
- AMBER: Solvate with mixture of ethanol and water(Newbie question) Huaer XC (Wed Apr 27 2005 - 00:41:00 CDT)
- AMBER: capping amit_at_mbu.iisc.ernet.in (Wed Apr 27 2005 - 02:30:37 CDT)
- Re: AMBER: doesn't work in pmemd, and no output in parallel simulations Robert Duke (Wed Apr 27 2005 - 07:06:46 CDT)
- Re: AMBER: mm_pbsa problem Husni Fattayer (Wed Apr 27 2005 - 10:09:40 CDT)
- Re: AMBER: error in pbsa calculation mingche Pan (Wed Apr 27 2005 - 11:20:10 CDT)
- Re: AMBER: capping FyD (Wed Apr 27 2005 - 11:40:36 CDT)
- Re: AMBER: capping John Mongan (Wed Apr 27 2005 - 11:50:43 CDT)
- Re: AMBER: error in pbsa calculation Ray Luo (Wed Apr 27 2005 - 12:03:33 CDT)
- Re: AMBER: capping Bill Ross (Wed Apr 27 2005 - 16:00:50 CDT)
- AMBER: emilia wu (Wed Apr 27 2005 - 21:35:59 CDT)
- Re: AMBER: Pyranose pucker parameters Thomas E. Cheatham, III (Wed Apr 27 2005 - 22:57:26 CDT)
- AMBER: mixture solvent model Huaer XC (Wed Apr 27 2005 - 23:13:11 CDT)
- Re: AMBER: A problem in TI approach - test case: meth2eth and eth2meth Ilyas Yildirim (Wed Apr 27 2005 - 23:34:32 CDT)
- Re: AMBER: capping amit_at_mbu.iisc.ernet.in (Thu Apr 28 2005 - 01:15:19 CDT)
- Re: AMBER: capping Bill Ross (Thu Apr 28 2005 - 01:41:48 CDT)
- AMBER: distance restraints mathew k varghese (Thu Apr 28 2005 - 02:00:16 CDT)
- Re: AMBER: A problem in TI approach - test case: meth2eth and eth2meth Petr Kulhanek (Thu Apr 28 2005 - 02:02:47 CDT)
- AMBER: Problem with "Thermodynamic integration calculations" tutorial ,unsuspected error Maciej (Thu Apr 28 2005 - 02:41:21 CDT)
- Re: AMBER: A problem in TI approach - test case: meth2eth and eth2meth David Case (Thu Apr 28 2005 - 08:03:00 CDT)
- Re: AMBER: capping FyD (Thu Apr 28 2005 - 11:21:03 CDT)
- AMBER: false bond created upon coordinate retrieval Stern, Julie (Thu Apr 28 2005 - 16:29:38 CDT)
- Re: AMBER: false bond created upon coordinate retrieval Bill Ross (Thu Apr 28 2005 - 17:00:38 CDT)
- AMBER: segmentation problem aanzellotti_at_mail2.vcu.edu (Thu Apr 28 2005 - 18:46:36 CDT)
- Re: AMBER: A problem in TI approach - test case: meth2eth and eth2meth Ilyas Yildirim (Thu Apr 28 2005 - 18:34:48 CDT)
- Re: AMBER: A problem in TI approach - test case: meth2eth and eth2meth Ilyas Yildirim (Thu Apr 28 2005 - 19:00:11 CDT)
- AMBER: atommask error Sergio E. Wong (Fri Apr 29 2005 - 01:02:05 CDT)
- Re: AMBER: atommask error hornak_at_csb.sunysb.edu (Fri Apr 29 2005 - 02:41:09 CDT)
- Re: AMBER: atommask error Sergio E. Wong (Fri Apr 29 2005 - 12:19:25 CDT)
- AMBER: Re: R.E.D. question FyD (Fri Apr 29 2005 - 15:21:34 CDT)
- AMBER: Odd Antechamber Behavior Kara Di Giorgio (Fri Apr 29 2005 - 23:48:01 CDT)
- AMBER: ipol=1 & use_pme= ?? Cenk Andac (Sat Apr 30 2005 - 08:26:57 CDT)
Last message date: Sat Dec 31 2005 - 12:51:27 CST
Archived on: Sat Dec 31 2005 - 12:51:45 CST
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