AMBER Archive (2009) - Jan 2009 By Author

Starting: Thu Jan 01 2009 - 21:33:30 CST
Ending: Sat Jan 31 2009 - 23:08:36 CST

• Adrien Delmont
  • [AMBER] analysis (Tue Jan 20 2009 - 11:03:16 CST)
• Akansha Saxena
  • [AMBER] "bad atom type" (Fri Jan 09 2009 - 11:15:11 CST)
• Alexander Schierholt
  • [AMBER] thioglycoside (Mon Jan 26 2009 - 08:46:28 CST)
• amirhossein taghavi
  • RE: [AMBER] Xleap - solvatebox - counterions (Sat Jan 31 2009 - 11:34:10 CST)
• Amit Bajaj
  • AMBER: reg sander crashing on more than 32 cores over IB (Mon Jan 05 2009 - 00:33:15 CST)
• Ananda Rama Krishnan Selvaraj
  • [AMBER] Installation error - Amber10 (Thu Jan 29 2009 - 05:47:44 CST)
• Andreas Svrcek-Seiler
  • Re: [AMBER] Installation error - Amber10 (Thu Jan 29 2009 - 05:52:44 CST)
  • Re: [AMBER] NAB entropy calcualtion (Fri Jan 09 2009 - 03:28:48 CST)
• archana sonawani
  • [AMBER] sander not working (Thu Jan 15 2009 - 23:52:48 CST)
  • [AMBER] Error in xleap (Thu Jan 15 2009 - 01:39:16 CST)
  • [AMBER] errorin sander---Amber10 (Tue Jan 13 2009 - 03:27:43 CST)
  • [AMBER] error in sander (Amber10) (Tue Jan 13 2009 - 02:21:09 CST)
  • AMBER: error in amber 10 (Tue Jan 06 2009 - 01:19:03 CST)
• Arnaud
  • [AMBER] Xleap - solvatebox - counterions (Fri Jan 30 2009 - 04:44:58 CST)
• Arturas Ziemys
  • Re: [AMBER] large resp charges for non-natural amino acid (Sat Jan 31 2009 - 11:03:44 CST)
  • Re: [AMBER] large resp charges for non-natural amino acid (Sat Jan 31 2009 - 11:03:09 CST)
  • Re: [AMBER] large resp charges for non-natural amino acid (Thu Jan 29 2009 - 15:38:12 CST)
  • Re: [AMBER] large resp charges for non-natural amino acid (Thu Jan 29 2009 - 09:10:50 CST)
  • [AMBER] large resp charges for non-natural amino acid (Tue Jan 27 2009 - 16:40:49 CST)
  • [AMBER] non-natural amino acids (Thu Jan 22 2009 - 11:32:11 CST)
• Aydin, Cihan
  • [AMBER] Citing AMBER Tools... (Sat Jan 31 2009 - 23:08:36 CST)
• Bala subramanian
  • Re: [AMBER] amber9 in fedora10 (Tue Jan 13 2009 - 12:16:19 CST)
  • [AMBER] amber9 in fedora10 (Tue Jan 13 2009 - 11:51:49 CST)
  • Re: [AMBER] RE: AMBER: xleap problem (Wed Jan 07 2009 - 08:54:44 CST)
  • Re: [AMBER] RE: AMBER: xleap problem (Wed Jan 07 2009 - 07:34:43 CST)
  • Re: [AMBER] RE: AMBER: xleap problem (Wed Jan 07 2009 - 04:53:24 CST)
  • Re: AMBER: xleap problem (Tue Jan 06 2009 - 13:43:00 CST)
  • AMBER: xleap problem (Tue Jan 06 2009 - 12:57:53 CST)
• balaji nagarajan
  • [AMBER] adding MG2 problem (Fri Jan 30 2009 - 03:45:58 CST)
  • [AMBER] reg.Targeted molecular dynamics (Tue Jan 27 2009 - 07:57:01 CST)
  • [AMBER] reg.Targeted molecular dynamics (Tue Jan 27 2009 - 07:56:54 CST)
  • [AMBER] reg: targeted molecular dynamics (Tue Jan 27 2009 - 07:02:03 CST)
  • [AMBER] reg.parallel.run.error (Sat Jan 24 2009 - 09:09:49 CST)
  • [AMBER] reg.parallel.run error (Fri Jan 23 2009 - 19:59:21 CST)
  • [AMBER] reg.error in parallel run (Fri Jan 23 2009 - 04:05:21 CST)
  • [AMBER] reg.parallel run error (Thu Jan 22 2009 - 12:41:25 CST)
  • [AMBER] reg . parallel run (Wed Jan 21 2009 - 23:34:03 CST)
• Barbault Florent
  • Re: [AMBER] atomic charge (Thu Jan 29 2009 - 02:24:48 CST)
• Beale, John
  • [AMBER] Alpha helix plot (Thu Jan 29 2009 - 14:10:11 CST)
  • [AMBER] lone pairs on CYX and MET (Thu Jan 08 2009 - 12:08:42 CST)
  • [AMBER] MD (Wed Jan 07 2009 - 08:40:07 CST)
• ben rodriguez
  • [AMBER] How to calculate cavity volume from MD structures? (Tue Jan 20 2009 - 16:21:43 CST)
• Bill Ross
  • Re: [AMBER] Xleap - solvatebox - counterions (Fri Jan 30 2009 - 12:40:07 CST)
  • Re: [AMBER] Duplicate residues (Mon Jan 19 2009 - 13:20:01 CST)
  • Re: [AMBER] ambpdb is changing atom names, a feature or bug? (Fri Jan 09 2009 - 11:53:23 CST)
  • Re: [AMBER] problem building AmberTools/sleap on AIX (Fri Jan 09 2009 - 11:45:55 CST)
• Bo Baker
  • Re: [AMBER] Re: AMBER: ligand parameter (Sun Jan 11 2009 - 18:52:19 CST)
  • Re: [AMBER] Re: AMBER: ligand parameter (Sun Jan 11 2009 - 18:20:08 CST)
  • Re: [AMBER] Re: AMBER: ligand parameter (Wed Jan 07 2009 - 20:18:02 CST)
  • Re: [AMBER] Re: AMBER: ligand parameter (Tue Jan 06 2009 - 23:05:00 CST)
  • [AMBER] Re: AMBER: ligand parameter (Tue Jan 06 2009 - 21:59:19 CST)
  • AMBER: ligand parameter (Mon Jan 05 2009 - 16:05:18 CST)
• Carina Backtorp
  • [AMBER] RESP charges for Fe in heme (Mon Jan 19 2009 - 07:48:11 CST)
• Carlos Simmerling
  • Re: [AMBER] Alpha helix plot (Fri Jan 30 2009 - 16:11:10 CST)
  • Re: [AMBER] reg.Targeted molecular dynamics (Wed Jan 28 2009 - 12:01:43 CST)
  • Re: [AMBER] reg: targeted molecular dynamics (Tue Jan 27 2009 - 07:04:57 CST)
  • Re: [AMBER] errors on REMD (Mon Jan 26 2009 - 11:38:39 CST)
  • Re: [AMBER] restraining atoms (Thu Jan 22 2009 - 08:55:35 CST)
  • Re: [AMBER] how to set up "Two molecules tied with an Elastic band of 20A in implicit solvent" (Tue Jan 20 2009 - 08:33:55 CST)
  • Re: [AMBER] errors on REMD (Tue Jan 20 2009 - 08:29:07 CST)
  • Re: [AMBER] errors on REMD (Tue Jan 20 2009 - 05:02:06 CST)
  • Re: [AMBER] (no subject) (Sun Jan 18 2009 - 07:08:41 CST)
  • Re: [AMBER] Heat and Equilibrate Hybrid GB solvent? (Fri Jan 16 2009 - 15:21:27 CST)
  • Re: [AMBER] (no subject) (Fri Jan 16 2009 - 12:46:11 CST)
  • Re: [AMBER] (no subject) (Fri Jan 16 2009 - 11:43:26 CST)
  • Re: [AMBER] sander not working (Fri Jan 16 2009 - 09:01:34 CST)
  • Re: [AMBER] restraint of REMD (Fri Jan 16 2009 - 05:57:29 CST)
  • Re: [AMBER] Using a restart file (Thu Jan 15 2009 - 10:45:27 CST)
  • Re: [AMBER] PTRAJ: solvent accessible surface area (Wed Jan 14 2009 - 09:00:59 CST)
  • Re: [AMBER] charges in topology file (Wed Jan 14 2009 - 05:24:52 CST)
  • Re: [AMBER] mm-GBSA from implicit (Sat Jan 10 2009 - 07:25:10 CST)
  • Re: AMBER: RMS plot (Tue Jan 06 2009 - 13:57:50 CST)
  • Re: AMBER: xleap problem (Tue Jan 06 2009 - 13:05:31 CST)
  • Re: AMBER: problem with ptraj image command in Amber 10? (Tue Jan 06 2009 - 11:37:51 CST)
  • Re: AMBER: RMS plot (Fri Jan 02 2009 - 08:08:44 CST)
• Carmen Domene
  • Re: [AMBER] crystal waters (Mon Jan 12 2009 - 14:32:28 CST)
  • [AMBER] crystal waters (Mon Jan 12 2009 - 14:04:24 CST)
• Carra, Claudio (JSC-SK)[USRA]
  • [AMBER] thermo, entropy by quasiharmonic method (Fri Jan 30 2009 - 15:35:37 CST)
  • [AMBER] principal component vector onto C-alpha (Tue Jan 13 2009 - 14:52:31 CST)
• Casey,Richard
  • [AMBER] Can we use AMBER? (Thu Jan 08 2009 - 11:25:57 CST)
  • [AMBER] Can we use Amber? (Thu Jan 08 2009 - 11:16:50 CST)
• Catein Catherine
  • RE: [AMBER] reaction coordinates (Wed Jan 14 2009 - 23:25:31 CST)
  • [AMBER] PTRAJ: solvent accessible surface area (Wed Jan 14 2009 - 01:32:15 CST)
  • [AMBER] mm-GBSA from implicit (Fri Jan 09 2009 - 21:13:28 CST)
  • [AMBER] implicit and explicit simulation: salt effect (Fri Jan 09 2009 - 21:03:35 CST)
• Cen Gao
  • [AMBER] Divcon or Mopac (Tue Jan 13 2009 - 17:54:33 CST)
• Cenk \(Jenk\) Andac
  • Re: [AMBER] MM - PBSA problem (Mon Jan 26 2009 - 10:20:25 CST)
  • Re: [AMBER] MM - PBSA problem (Mon Jan 26 2009 - 06:14:52 CST)
  • Re: [AMBER] MM - PBSA problem (Sun Jan 25 2009 - 14:38:16 CST)
  • Re: [AMBER] MM - PBSA problem (Fri Jan 23 2009 - 08:34:46 CST)
  • Re: [AMBER] MM - PBSA problem (Thu Jan 22 2009 - 16:00:13 CST)
• chaitanya koppisetty
  • [AMBER] NAB entropy calcualtion (Fri Jan 09 2009 - 03:01:13 CST)
• Chih-Ying Lin
  • Re: RE: [AMBER] MD vs scattering (Tue Jan 20 2009 - 15:26:49 CST)
  • [AMBER] MD vs scattering (Tue Jan 20 2009 - 15:10:47 CST)
• D.J. Cole
  • Re: AMBER: apparent error in closest function in ptraj 10 (Fri Jan 02 2009 - 10:06:01 CST)
• David A. Case
  • Re: [AMBER] Test run on Solaris 10 X 86 (Sat Jan 31 2009 - 20:49:22 CST)
  • Re: [AMBER] thermo, entropy by quasiharmonic method (Fri Jan 30 2009 - 17:40:38 CST)
  • Re: [AMBER] Dr. Ramesh here (Fri Jan 30 2009 - 10:08:43 CST)
  • Re: [AMBER] Xleap - solvatebox - counterions (Fri Jan 30 2009 - 10:04:23 CST)
  • Re: [AMBER] Compilation and usage of NAB in parallel ? (Fri Jan 30 2009 - 09:51:31 CST)
  • Re: [AMBER] AmberTools 1.2 (Fri Jan 30 2009 - 06:04:41 CST)
  • Re: [AMBER] failure to run antechamber with amber 10 (Thu Jan 29 2009 - 16:45:53 CST)
  • Re: [AMBER] GAFF conjugated ring system dihedrals (Thu Jan 29 2009 - 12:37:24 CST)
  • Re: [AMBER] Installation error - Amber10 (Thu Jan 29 2009 - 12:33:33 CST)
  • Re: [AMBER] Compilation and usage of NAB in parallel ? (Thu Jan 29 2009 - 07:22:08 CST)
  • Re: [AMBER] Atome Type (Thu Jan 29 2009 - 07:08:09 CST)
  • Re: [AMBER] generating top file using antechmaber (Thu Jan 29 2009 - 06:51:56 CST)
  • Re: [AMBER] Watercap... some querries (Wed Jan 28 2009 - 09:01:46 CST)
  • Re: [AMBER] Antechamber ligand prep (Tue Jan 27 2009 - 09:33:57 CST)
  • Re: [AMBER] antechamber : missed atoms (Tue Jan 27 2009 - 09:23:27 CST)
  • Re: [AMBER] RE:xleap problem (Tue Jan 27 2009 - 09:18:53 CST)
  • Re: [AMBER] atom types (Tue Jan 27 2009 - 09:13:30 CST)
  • Re: [AMBER] Antechamber ligand prep (Tue Jan 27 2009 - 08:59:47 CST)
  • Re: [AMBER] xleap problem (Sun Jan 25 2009 - 17:30:47 CST)
  • Re: [AMBER] MM - PBSA problem (Sun Jan 25 2009 - 08:26:07 CST)
  • Re: [AMBER] MM - PBSA problem (Sun Jan 25 2009 - 08:21:33 CST)
  • Re: [AMBER] xleap problem (Sun Jan 25 2009 - 07:57:41 CST)
  • Re: [AMBER] Problem with entropy calculation of bigger system using NMODE and NAB. (Sat Jan 24 2009 - 08:37:31 CST)
  • Re: [AMBER] error on open distatance restraint (Fri Jan 23 2009 - 21:18:17 CST)
  • Re: [AMBER] charge derivation for ATP molecule using antechamber (Fri Jan 23 2009 - 10:51:49 CST)
  • Re: [AMBER] how to use those water models off the list in amber? (Thu Jan 22 2009 - 07:29:41 CST)
  • Re: [AMBER] Problem with entropy calculation of bigger system using NMODE and NAB. (Wed Jan 21 2009 - 08:52:33 CST)
  • Re: [AMBER] Problem with entropy calculation of bigger system using NMODE and NAB. (Tue Jan 20 2009 - 14:53:48 CST)
  • Re: [AMBER] Duplicate residues (Mon Jan 19 2009 - 07:16:28 CST)
  • Re: [AMBER] (no subject) (Sat Jan 17 2009 - 20:48:25 CST)
  • Re: [AMBER] Parallelepiped periodic box (Fri Jan 16 2009 - 13:50:32 CST)
  • Re: [AMBER] (no subject) (Fri Jan 16 2009 - 13:10:33 CST)
  • Re: [AMBER] nab conjgrad min problem (Fri Jan 16 2009 - 09:33:01 CST)
  • Re: [AMBER] sander not working (Fri Jan 16 2009 - 08:58:50 CST)
  • Re: [AMBER] Re: AMBER: Re: nmode error: bad nonbon (amber 10) (Wed Jan 14 2009 - 07:13:18 CST)
  • Re: [AMBER] reaction coordinates (Wed Jan 14 2009 - 07:00:59 CST)
  • Re: [AMBER] errorin sander---Amber10 (Tue Jan 13 2009 - 07:22:36 CST)
  • Re: [AMBER] Writing out trajectory in NAB (Mon Jan 12 2009 - 11:22:58 CST)
  • Re: [AMBER] Amber 9 installation problem on Ubuntu (Mon Jan 12 2009 - 06:01:31 CST)
  • Re: [AMBER] implicit and explicit simulation: salt effect (Sat Jan 10 2009 - 10:26:45 CST)
  • Re: [AMBER] implicit and explicit simulation: salt effect (Sat Jan 10 2009 - 10:23:08 CST)
  • Re: Re: [AMBER] ambpdb is changing atom names, a feature or bug? (Sat Jan 10 2009 - 10:02:53 CST)
  • Re: [AMBER] ambpdb is changing atom names, a feature or bug? (Fri Jan 09 2009 - 12:58:20 CST)
  • Re: [AMBER] NAB entropy calcualtion (Fri Jan 09 2009 - 07:13:32 CST)
  • Re: [AMBER] ambpdb is changing atom names, a feature or bug? (Fri Jan 09 2009 - 07:01:54 CST)
  • Re: [AMBER] how many processors for parallel test (Thu Jan 08 2009 - 07:44:52 CST)
  • Re: [AMBER] how many processors for parallel test (Thu Jan 08 2009 - 06:08:06 CST)
  • Re: [AMBER] Using GAFF with a covalently bound ligand or label (Wed Jan 07 2009 - 20:42:27 CST)
  • Re: [AMBER] PHOSPHOTHREONINE (Wed Jan 07 2009 - 13:29:35 CST)
  • Re: [AMBER] four prepin/frcmod files be read simultaneously by leap (Wed Jan 07 2009 - 12:39:56 CST)
  • Re: [AMBER] RE: AMBER: xleap problem (Wed Jan 07 2009 - 07:43:16 CST)
  • Re: [AMBER] Re: AMBER: ligand parameter (Wed Jan 07 2009 - 07:08:27 CST)
  • Re: [AMBER] RE: AMBER: xleap problem (Wed Jan 07 2009 - 07:06:19 CST)
  • [AMBER] Re: AMBER: questions about equilibram (Wed Jan 07 2009 - 06:54:10 CST)
  • Re: AMBER: Re: nmode error: bad nonbon (amber 10) (Tue Jan 06 2009 - 08:32:48 CST)
  • Re: AMBER: error in amber 10 (Tue Jan 06 2009 - 06:28:54 CST)
  • Re: AMBER: error in amber 10 (Tue Jan 06 2009 - 06:18:23 CST)
  • Re: AMBER: CHCl3 solvent box (Mon Jan 05 2009 - 07:48:44 CST)
  • Re: AMBER: reg sander crashing on more than 32 cores over IB (Mon Jan 05 2009 - 06:47:01 CST)
  • Re: AMBER: a question about ff03ua (Fri Jan 02 2009 - 10:35:15 CST)
  • Re: AMBER: energy jumps during molecule minimization (Fri Jan 02 2009 - 06:48:23 CST)
• David LeBard
  • Re: [AMBER] implicit and explicit simulation: salt effect (Fri Jan 09 2009 - 22:23:24 CST)
• David Watson
  • Re: [AMBER] Antechamber ligand prep (Tue Jan 27 2009 - 09:34:25 CST)
  • Re: [AMBER] Antechamber Connectivity (Mon Jan 26 2009 - 13:59:58 CST)
  • [AMBER] AmberTools and ptraj clustering on Mac OS X (Sat Jan 24 2009 - 15:41:04 CST)
  • Re: [AMBER] multisander error (Mon Jan 12 2009 - 16:15:26 CST)
  • Re: [AMBER] Re: AMBER: ligand parameter (Sun Jan 11 2009 - 18:39:02 CST)
  • Re: [AMBER] implicit and explicit simulation: salt effect (Fri Jan 09 2009 - 21:49:48 CST)
• deepti nayar
  • [AMBER] atom types (Tue Jan 27 2009 - 03:47:12 CST)
  • [AMBER] prot-DNA simulation (Wed Jan 21 2009 - 05:16:09 CST)
• drugdesign
  • [AMBER] Question on heating for homology based model. (Sat Jan 31 2009 - 12:43:06 CST)
  • [AMBER] Use of Amber in distributed calculations (Sat Jan 17 2009 - 01:33:55 CST)
  • [AMBER] Amber 9 installation problem on Ubuntu (Mon Jan 12 2009 - 00:26:34 CST)
• Duggan, Brendan M.
  • RE: AMBER: RMS plot (Tue Jan 06 2009 - 13:54:04 CST)
• Eric
  • Re: [AMBER] amber9 in fedora10 (Tue Jan 13 2009 - 12:28:33 CST)
• Floris Buelens
  • [AMBER] GAFF conjugated ring system dihedrals (Wed Jan 28 2009 - 06:04:55 CST)
• fohm fohm
  • [AMBER] pmemd | Compilation problem with ifort and mvapich environment (Wed Jan 14 2009 - 11:23:50 CST)
• Francesco Pietra
  • Re: [AMBER] failure to run antechamber with amber 10 (Fri Jan 30 2009 - 02:04:33 CST)
  • [AMBER] failure to run antechamber with amber 10 (Thu Jan 29 2009 - 16:29:18 CST)
  • [AMBER] Off topic. Hardware problem (Sat Jan 10 2009 - 02:26:55 CST)
• Furia Gargano
  • [AMBER] to remove AMBER list (Sat Jan 17 2009 - 12:02:26 CST)
  • [AMBER] To stop the AMBER's list (Sat Jan 17 2009 - 11:59:48 CST)
• FyD
  • Re: [AMBER] large resp charges for non-natural amino acid (Thu Jan 29 2009 - 15:58:34 CST)
  • Re: [AMBER] large resp charges for non-natural amino acid (Thu Jan 29 2009 - 14:57:51 CST)
  • Re: [AMBER] large resp charges for non-natural amino acid (Wed Jan 28 2009 - 22:04:11 CST)
  • Re: [AMBER] topology file for GLY with amino and carboxyl group? (Tue Jan 27 2009 - 14:02:14 CST)
  • Re: [AMBER] thioglycoside (Mon Jan 26 2009 - 09:07:37 CST)
  • Re: [AMBER] non-natural amino acids (Thu Jan 22 2009 - 17:25:31 CST)
  • Re: [AMBER] Using GAFF with a covalently bound ligand or label (Fri Jan 16 2009 - 03:13:43 CST)
  • Re: [AMBER] Can't reproduce RESP charges (Tue Jan 13 2009 - 05:52:13 CST)
  • [AMBER] Release of the R.E.D.-III.1 tools (Mon Jan 12 2009 - 05:59:14 CST)
  • Re: [AMBER] number-of-EPS-exceeds-MAXESP (Mon Jan 12 2009 - 01:43:48 CST)
  • Re: [AMBER] number-of-EPS-exceeds-MAXESP (Sun Jan 11 2009 - 01:00:40 CST)
  • Re: [AMBER] number-of-EPS-exceeds-MAXESP (Sat Jan 10 2009 - 02:26:13 CST)
  • Re: AMBER: a question about ff03ua (Fri Jan 02 2009 - 14:20:37 CST)
• George Tzotzos
  • Re: [AMBER] failure to run antechamber with amber 10 (Thu Jan 29 2009 - 16:48:50 CST)
  • Re: [AMBER] Building atom and angle parameters (Tue Jan 27 2009 - 12:24:52 CST)
  • Re: [AMBER] Antechamber ligand prep (Tue Jan 27 2009 - 10:44:06 CST)
  • Re: [AMBER] Antechamber ligand prep (Tue Jan 27 2009 - 09:43:19 CST)
  • Re: [AMBER] Antechamber ligand prep (Tue Jan 27 2009 - 09:24:30 CST)
  • Re: [AMBER] Antechamber ligand prep (Tue Jan 27 2009 - 08:48:11 CST)
  • Re: [AMBER] Antechamber Connectivity (Mon Jan 26 2009 - 12:23:58 CST)
  • Re: [AMBER] "Could not find bond parameter" (Fri Jan 23 2009 - 12:16:34 CST)
  • RE: [AMBER] Atom types (Mon Jan 19 2009 - 12:02:42 CST)
  • [AMBER] Atom types (Mon Jan 19 2009 - 08:04:09 CST)
  • RE: [AMBER] Duplicate residues (Mon Jan 19 2009 - 06:54:37 CST)
  • Re: [AMBER] RE: Tutorial 5 (Fri Jan 16 2009 - 14:31:11 CST)
• gmail
  • [AMBER] error on open distatance restraint (Fri Jan 23 2009 - 20:58:27 CST)
• Gustavo Seabra
  • Re: [AMBER] solvent mixture (Sat Jan 24 2009 - 20:44:31 CST)
  • Re: [AMBER] AMBER External keyword (Sat Jan 24 2009 - 20:32:10 CST)
  • Re: AMBER: SMD-related questions (Fri Jan 02 2009 - 07:21:53 CST)
• GZ Zhang
  • Re: [AMBER] how to use those water models off the list in amber? (Thu Jan 22 2009 - 14:47:02 CST)
  • [AMBER] how to use those water models off the list in amber? (Wed Jan 21 2009 - 15:39:50 CST)
• Hannes Loeffler
  • [AMBER] ptraj, CHARMM PSF and CMAP (Wed Jan 14 2009 - 03:45:07 CST)
• Ian Streeter
  • [AMBER] Parallelepiped periodic box (Mon Jan 12 2009 - 09:57:55 CST)
• iccy liu
  • [AMBER] solvent mixture (Tue Jan 20 2009 - 16:08:34 CST)
• IN SUK JOUNG
  • Re: [AMBER] Need help with point to plane distance calculation in nab (Thu Jan 08 2009 - 13:41:09 CST)
  • Re: [AMBER] Need help with point to plane distance calculation in nab (Thu Jan 08 2009 - 13:00:20 CST)
• Jagadeesh, M.N., Ph.D.
  • [AMBER] how to set up "Two molecules tied with an Elastic band of 20A in implicit solvent" (Mon Jan 19 2009 - 03:03:39 CST)
• James W. Caldwell
  • [AMBER] AmberTools 1.2 (Thu Jan 29 2009 - 18:04:36 CST)
  • Re: [AMBER] RE: AMBER: mail list (Tue Jan 06 2009 - 19:24:12 CST)
• Jason A. Ford-Green
  • Re: [AMBER] How to calculate cavity volume from MD structures? (Wed Jan 21 2009 - 09:39:57 CST)
  • [AMBER] Heat and Equilibrate Hybrid GB solvent? (Fri Jan 16 2009 - 15:14:41 CST)
  • [AMBER] Ligand Diffusion Studies? (Thu Jan 15 2009 - 11:42:03 CST)
• Jeffrey
  • [AMBER] NPT md with PME method for a water box (Wed Jan 14 2009 - 08:41:24 CST)
• Jenny Iskrenova
  • Re: [AMBER] (no subject) (Mon Jan 19 2009 - 12:54:39 CST)
  • Re: [AMBER] (no subject) (Fri Jan 16 2009 - 17:20:46 CST)
  • Re: [AMBER] (no subject) (Fri Jan 16 2009 - 12:42:08 CST)
• Jeremy Harris
  • Re: [AMBER] nab conjgrad min problem (Mon Jan 19 2009 - 09:00:30 CST)
  • [AMBER] nab conjgrad min problem (Fri Jan 16 2009 - 09:11:12 CST)
  • [AMBER] Re: AMBER: Re: nmode error: bad nonbon (amber 10) (Tue Jan 13 2009 - 15:58:36 CST)
  • AMBER: Re: nmode error: bad nonbon (amber 10) (Tue Jan 06 2009 - 07:37:21 CST)
• Jose Borreguero
  • [AMBER] topology file for GLY with amino and carboxyl group? (Tue Jan 27 2009 - 12:57:45 CST)
• Justine Condo
  • Re: [AMBER] multisander error (Mon Jan 12 2009 - 17:01:41 CST)
  • Re: [AMBER] multisander error (Mon Jan 12 2009 - 16:39:44 CST)
  • Re: [AMBER] multisander error (Mon Jan 12 2009 - 16:32:31 CST)
  • [AMBER] multisander error (Mon Jan 12 2009 - 16:03:37 CST)
• Karol Kaszuba
  • Re: [AMBER] number-of-EPS-exceeds-MAXESP (Sat Jan 17 2009 - 04:41:22 CST)
  • Re: [AMBER] number-of-EPS-exceeds-MAXESP (Mon Jan 12 2009 - 01:57:50 CST)
  • Re: [AMBER] number-of-EPS-exceeds-MAXESP (Sun Jan 11 2009 - 02:01:07 CST)
  • Re: [AMBER] number-of-EPS-exceeds-MAXESP (Sat Jan 10 2009 - 09:27:08 CST)
  • [AMBER] number-of-EPS-exceeds-MAXESP (Fri Jan 09 2009 - 15:07:13 CST)
• karthik s
  • Re: [AMBER] using binary trajectories from NAMD in PTRAJ (Tue Jan 27 2009 - 00:49:13 CST)
  • [AMBER] using binary trajectories from NAMD in PTRAJ (Mon Jan 26 2009 - 01:11:29 CST)
• Khaled Barakat
  • Re: [AMBER] antechamber : missed atoms (Mon Jan 26 2009 - 14:22:14 CST)
  • Re: [AMBER] antechamber : missed atoms (Mon Jan 26 2009 - 13:20:52 CST)
  • Re: [AMBER] antechamber : missed atoms (Mon Jan 26 2009 - 13:15:33 CST)
  • [AMBER] antechamber : missed atoms (Mon Jan 26 2009 - 12:54:07 CST)
  • [AMBER] PHOSPHOTHREONINE (Wed Jan 07 2009 - 13:11:43 CST)
• kureeckal ramesh
  • Re: [AMBER] Dr. Ramesh here (Thu Jan 29 2009 - 21:18:33 CST)
  • Re: [AMBER] Dr. Ramesh here (Thu Jan 29 2009 - 19:41:17 CST)
  • [AMBER] Dr. Ramesh here (Thu Jan 29 2009 - 04:41:10 CST)
• Lachele Foley (Lists)
  • Re: [AMBER] thioglycoside (Mon Jan 26 2009 - 09:36:26 CST)
• Lake, Thomas
  • [AMBER] (no subject) (Thu Jan 22 2009 - 07:43:59 CST)
  • [AMBER] (no subject) (Fri Jan 16 2009 - 11:38:09 CST)
• Larry Layne
  • [AMBER] PBSA: PB bomb in pb_setgrd() (Wed Jan 07 2009 - 09:33:57 CST)
• Lauren Wickstrom
  • Re: [AMBER] how to use those water models off the list in amber? (Wed Jan 21 2009 - 17:58:22 CST)
• m m
  • [AMBER] atomic charge (Thu Jan 29 2009 - 02:08:47 CST)
• M. L. Dodson
  • Re: [AMBER] RE:xleap problem (Thu Jan 29 2009 - 10:22:22 CST)
  • Re: [AMBER] RE:xleap problem (Mon Jan 26 2009 - 14:47:26 CST)
  • Re: [AMBER] Use of Amber in distributed calculations (Sat Jan 17 2009 - 08:01:36 CST)
  • Re: [AMBER] Use of Amber in distributed calculations (Sat Jan 17 2009 - 07:48:42 CST)
  • Re: [AMBER] Need help with point to plane distance calculation in nab (Thu Jan 08 2009 - 13:54:15 CST)
  • Re: [AMBER] Need help with point to plane distance calculation in nab (Thu Jan 08 2009 - 13:16:51 CST)
  • [AMBER] Need help with point to plane distance calculation in nab (Thu Jan 08 2009 - 12:39:16 CST)
  • Re: [AMBER] RE: AMBER: mail list (Wed Jan 07 2009 - 10:04:02 CST)
• Madhurima Jana
  • [AMBER] force-field for cyclic oligosaccharide using leap (Sun Jan 11 2009 - 22:21:23 CST)
  • [AMBER] force-field for cyclic oligosaccharide using leap (Thu Jan 08 2009 - 22:50:18 CST)
• Mahmoud A. A. Ibrahim
  • [AMBER] Atome Type (Thu Jan 29 2009 - 04:59:42 CST)
  • [AMBER] AMBER External keyword (Wed Jan 21 2009 - 09:59:33 CST)
• Manikandan Chandrasekaran
  • [AMBER] Test run on Solaris 10 X 86 (Sat Jan 31 2009 - 12:39:14 CST)
• Marek Malý
  • Re: [AMBER] Compilation and usage of NAB in parallel ? (Fri Jan 30 2009 - 10:01:06 CST)
  • Re: [AMBER] Compilation and usage of NAB in parallel ? (Fri Jan 30 2009 - 08:59:07 CST)
  • [AMBER] Compilation and usage of NAB in parallel ? (Wed Jan 28 2009 - 16:25:24 CST)
  • Re: [AMBER] Problem with entropy calculation of bigger system using NMODE and NAB. (Wed Jan 21 2009 - 16:48:58 CST)
  • Re: [AMBER] Problem with entropy calculation of bigger system using NMODE and NAB. (Tue Jan 20 2009 - 20:48:03 CST)
  • [AMBER] Problem with entropy calculation of bigger system using NMODE and NAB. (Tue Jan 20 2009 - 12:24:55 CST)
• Mark M Huntress
  • AMBER: mail list (Tue Jan 06 2009 - 17:06:57 CST)
• Mark Williamson
  • Re: [AMBER] xmgrace and plotting time evolution of a defined variable (Wed Jan 14 2009 - 18:38:17 CST)
  • Re: [AMBER] amber9 in fedora10 (Tue Jan 13 2009 - 11:56:31 CST)
• Markus Kaukonen
  • Re: [AMBER] Using GAFF with a covalently bound ligand or label (Fri Jan 16 2009 - 00:31:53 CST)
  • [AMBER] ambpdb is changing atom names, a feature or bug? (Fri Jan 09 2009 - 06:55:41 CST)
• Martin Peters
  • Re: [AMBER] Divcon or Mopac (Wed Jan 14 2009 - 03:01:12 CST)
• Maxime Louet
  • [AMBER] REMD fixed atoms (Fri Jan 30 2009 - 11:26:08 CST)
• michael
  • [AMBER] how many processors for parallel test (Thu Jan 08 2009 - 05:01:41 CST)
• michael bane
  • Re: [AMBER] how many processors for parallel test (Thu Jan 08 2009 - 07:56:59 CST)
  • Re: [AMBER] how many processors for parallel test (Thu Jan 08 2009 - 07:31:31 CST)
• Michael J Yonkunas
  • [AMBER] distance restraint and SHAKE (Tue Jan 27 2009 - 11:39:56 CST)
• momo momo
  • [AMBER] help (Fri Jan 30 2009 - 06:35:22 CST)
  • [AMBER] bad energy??!! (Wed Jan 14 2009 - 13:19:20 CST)
  • [AMBER] molecular mechanic minimisation with amber (Wed Jan 14 2009 - 08:58:47 CST)
• musa özboyacý
  • Re: [AMBER] MM - PBSA problem (Mon Jan 26 2009 - 10:32:40 CST)
  • Re: [AMBER] MM - PBSA problem (Mon Jan 26 2009 - 06:43:33 CST)
  • Re: [AMBER] MM - PBSA problem (Mon Jan 26 2009 - 05:15:13 CST)
  • Re: [AMBER] MM - PBSA problem (Sun Jan 25 2009 - 07:12:05 CST)
  • Re: [AMBER] MM - PBSA problem (Fri Jan 23 2009 - 07:14:05 CST)
  • Re: [AMBER] MM - PBSA problem (Thu Jan 22 2009 - 13:52:10 CST)
  • [AMBER] MM - PBSA problem (Thu Jan 22 2009 - 11:06:54 CST)
  • [AMBER] Dipole command in ptraj (Wed Jan 14 2009 - 17:15:26 CST)
  • [AMBER] Dipole command in ptraj (Wed Jan 14 2009 - 09:41:07 CST)
  • AMBER: Dielectric constant (Sat Jan 03 2009 - 12:54:06 CST)
• Naser Alijabbari
  • [AMBER] xmgrace and plotting time evolution of a defined variable (Wed Jan 14 2009 - 18:20:31 CST)
• neville forlemu
  • [AMBER] restraining atoms (Thu Jan 22 2009 - 08:53:48 CST)
• Niel Henriksen
  • RE: [AMBER] MM - PBSA problem (Thu Jan 22 2009 - 18:52:09 CST)
  • RE: [AMBER] Problem with entropy calculation of bigger system using NMODE and NAB. (Tue Jan 20 2009 - 14:49:38 CST)
• Nir London
  • [AMBER] Rosetta Academic Training Workshop (Tue Jan 27 2009 - 07:07:24 CST)
• oguz gurbulak
  • Re: [AMBER] RE:xleap problem (Thu Jan 29 2009 - 09:53:30 CST)
  • Re: [AMBER] RE:xleap problem (Mon Jan 26 2009 - 15:40:22 CST)
  • [AMBER] RE:xleap problem (Mon Jan 26 2009 - 13:48:11 CST)
  • [AMBER] xleap problem (Sun Jan 25 2009 - 05:49:28 CST)
  • [AMBER] xleap problem (Sun Jan 25 2009 - 10:34:39 CST)
  • [AMBER] xleap problem (Sun Jan 25 2009 - 10:27:48 CST)
  • [AMBER] RE:xleap problem (Sun Jan 25 2009 - 10:08:26 CST)
  • Re: [AMBER] xleap problem (Sun Jan 25 2009 - 10:02:50 CST)
  • [AMBER] xleap problem (Sun Jan 25 2009 - 05:56:12 CST)
  • Re: AMBER: a question about ff03ua (Fri Jan 02 2009 - 09:30:46 CST)
• Osmar Norberto de Souza
  • [AMBER] Amber Parameters for Iron Heme covalently boud to carbon monoxide (Wed Jan 07 2009 - 12:23:06 CST)
• Paul Ledbetter
  • AMBER: energy jumps during molecule minimization (Thu Jan 01 2009 - 21:33:30 CST)
• Peter Gannett
  • Re: [AMBER] Very weird topology problem (Sat Jan 24 2009 - 17:17:26 CST)
• prachi munjal
  • [AMBER] charge derivation for ATP molecule using antechamber (Fri Jan 23 2009 - 07:19:27 CST)
• ranqi zhu
  • [AMBER] Very weird topology problem (Sat Jan 24 2009 - 15:14:24 CST)
• Rausch, Felix
  • [AMBER] antechamber cation failure (Wed Jan 14 2009 - 07:32:04 CST)
  • [AMBER] reaction coordinates (Wed Jan 14 2009 - 05:54:57 CST)
• Ray Luo
  • RE: [AMBER] Problem in watercap simulation, PB_Bomb (Thu Jan 29 2009 - 11:45:33 CST)
  • RE: [AMBER] MM - PBSA problem (Thu Jan 22 2009 - 11:31:53 CST)
  • RE: [AMBER] PBSA: PB bomb in pb_setgrd() (Wed Jan 07 2009 - 12:24:15 CST)
• Robert Duke
  • Re: [AMBER] Watercap... some querries (Wed Jan 28 2009 - 12:46:02 CST)
• Roman Osman
  • Re: AMBER: apparent error in closest function in ptraj 10 (Fri Jan 02 2009 - 11:37:09 CST)
  • AMBER: apparent error in closest function in ptraj 10 (Fri Jan 02 2009 - 09:54:48 CST)
• Ross Walker
  • [AMBER] RE: Tutorial 5 (Fri Jan 30 2009 - 19:32:03 CST)
  • RE: [AMBER] help (Fri Jan 30 2009 - 07:42:33 CST)
  • [AMBER] NOTICE: File size limits on AMBER reflector (Tue Jan 27 2009 - 10:35:50 CST)
  • RE: [AMBER] reg.parallel.run error (Sat Jan 24 2009 - 00:05:50 CST)
  • RE: [AMBER] "Could not find bond parameter" (Fri Jan 23 2009 - 12:29:46 CST)
  • [AMBER] RE: errors on remd (Fri Jan 23 2009 - 10:38:06 CST)
  • RE: [AMBER] reg.error in parallel run (Fri Jan 23 2009 - 09:52:20 CST)
  • RE: [AMBER] reg.parallel run error (Thu Jan 22 2009 - 14:06:33 CST)
  • RE: [AMBER] reg . parallel run (Thu Jan 22 2009 - 09:52:55 CST)
  • RE: [AMBER] (no subject) (Thu Jan 22 2009 - 09:46:56 CST)
  • RE: [AMBER] MD vs scattering (Tue Jan 20 2009 - 15:18:26 CST)
  • RE: [AMBER] Atom types (Mon Jan 19 2009 - 09:46:10 CST)
  • RE: [AMBER] AMBER efficiency: Intel vs. AMD (Mon Jan 19 2009 - 09:39:33 CST)
  • RE: [AMBER] (no subject) (Sun Jan 18 2009 - 12:07:24 CST)
  • RE: [AMBER] to remove AMBER list (Sat Jan 17 2009 - 15:32:19 CST)
  • [AMBER] RE: Tutorial 5 (Fri Jan 16 2009 - 11:10:51 CST)
  • RE: [AMBER] Using a restart file (Thu Jan 15 2009 - 10:52:44 CST)
  • RE: [AMBER] Error in xleap (Thu Jan 15 2009 - 10:01:20 CST)
  • [AMBER] Postdoc Position Available at SDSC/UCSD (Wed Jan 14 2009 - 14:35:52 CST)
  • RE: [AMBER] bad energy??!! (Wed Jan 14 2009 - 13:40:24 CST)
  • RE: [AMBER] NPT md with PME method for a water box (Wed Jan 14 2009 - 12:07:13 CST)
  • RE: [AMBER] molecular mechanic minimisation with amber (Wed Jan 14 2009 - 11:56:23 CST)
  • RE: [AMBER] pmemd | Compilation problem with ifort and mvapich environment (Wed Jan 14 2009 - 11:53:20 CST)
  • RE: [AMBER] antechamber cation failure (Wed Jan 14 2009 - 11:45:43 CST)
  • RE: [AMBER] ptraj, CHARMM PSF and CMAP (Wed Jan 14 2009 - 10:46:17 CST)
  • RE: [AMBER] amber9 in fedora10 (Tue Jan 13 2009 - 12:00:33 CST)
  • RE: [AMBER] multisander error (Mon Jan 12 2009 - 16:51:48 CST)
  • RE: [AMBER] multisander error (Mon Jan 12 2009 - 16:20:06 CST)
  • RE: [AMBER] mpirun (Thu Jan 08 2009 - 17:28:12 CST)
  • RE: [AMBER] mairun (Thu Jan 08 2009 - 16:51:49 CST)
  • RE: [AMBER] Can we use AMBER? (Thu Jan 08 2009 - 12:47:18 CST)
  • RE: [AMBER] mairun (Thu Jan 08 2009 - 12:25:26 CST)
  • RE: [AMBER] lone pairs on CYX and MET (Thu Jan 08 2009 - 12:17:52 CST)
  • RE: [AMBER] Re: AMBER: ligand parameter (Wed Jan 07 2009 - 22:10:20 CST)
  • RE: [AMBER] MD (Wed Jan 07 2009 - 18:33:46 CST)
  • [AMBER] RE: same result (Wed Jan 07 2009 - 10:59:39 CST)
  • [AMBER] RE: RE: amber force filed for RNA (Wed Jan 07 2009 - 10:49:41 CST)
  • RE: [AMBER] Re: AMBER: ligand parameter (Tue Jan 06 2009 - 22:25:20 CST)
  • [AMBER] RE: AMBER: xleap problem (Tue Jan 06 2009 - 21:58:26 CST)
  • [AMBER] TEST Message - please ignore. (Tue Jan 06 2009 - 19:00:39 CST)
  • [AMBER] RE: AMBER: mail list (Tue Jan 06 2009 - 17:47:08 CST)
  • AMBER: REMINDER: The amber@scripps.edu mailing list is now CLOSED (Tue Jan 06 2009 - 17:40:50 CST)
  • [AMBER] amber@ambermd.org open for business (Tue Jan 06 2009 - 17:34:31 CST)
  • AMBER: IMPORTANT Information regarding AMBER Mailing List - please read. (Tue Jan 06 2009 - 14:40:00 CST)
  • RE: AMBER: ligand parameter (Mon Jan 05 2009 - 23:48:13 CST)
  • AMBER: IMPORTANT INFORMATION: Notice regarding transition of AMBER mailing list to new address. (Sat Jan 03 2009 - 16:12:19 CST)
• rpaduri_at_chem.wayne.edu
  • Re: [AMBER] Dr. Ramesh here (Thu Jan 29 2009 - 11:22:20 CST)
  • Re: [AMBER] four prepin/frcmod files be read simultaneously by leap (Wed Jan 07 2009 - 10:05:09 CST)
• Ryan Pavlovicz
  • AMBER: problem with ptraj image command in Amber 10? (Tue Jan 06 2009 - 11:28:27 CST)
• S.Sundar Raman
  • Re: [AMBER] principal component vector onto C-alpha (Tue Jan 13 2009 - 16:46:20 CST)
• Sale, Kenneth L
  • [AMBER] Using GAFF with a covalently bound ligand or label (Wed Jan 07 2009 - 19:30:10 CST)
• Sanghwa Han
  • [AMBER] Can't reproduce RESP charges (Sun Jan 11 2009 - 23:57:15 CST)
  • [AMBER] Non-planarity of amide atoms after optimization (Wed Jan 07 2009 - 21:17:18 CST)
• sarvin moghaddam
  • [AMBER] Amber top file to Charmm top file (Fri Jan 30 2009 - 08:48:44 CST)
  • Re: [AMBER] generating top file using antechmaber (Thu Jan 29 2009 - 09:24:50 CST)
  • Re: [AMBER] generating top file using antechmaber (Wed Jan 28 2009 - 14:33:00 CST)
  • [AMBER] generating top file using antechmaber (Wed Jan 28 2009 - 13:49:20 CST)
• Scott Brozell
  • Re: AMBER: install amber10 (Tue Jan 06 2009 - 13:33:21 CST)
  • Re: AMBER: install amber 10 on linux with openSUSE 10.2 (x86-64) (Tue Jan 06 2009 - 13:23:29 CST)
  • Re: AMBER: bug of the mm_pbsa module in ambertools 1.2 (Tue Jan 06 2009 - 12:59:15 CST)
• Sean Johnston
  • Re: [AMBER] antechamber : missed atoms (Mon Jan 26 2009 - 13:40:59 CST)
• Shan-ho Tsai
  • [AMBER] REM_hybrid test fails on AIX (Thu Jan 22 2009 - 14:28:04 CST)
  • Re: [AMBER] problem building AmberTools/sleap on AIX (Wed Jan 21 2009 - 15:53:00 CST)
  • Re: [AMBER] problem building AmberTools/sleap on AIX (Fri Jan 16 2009 - 14:58:53 CST)
  • Re: [AMBER] problem building AmberTools/sleap on AIX (Mon Jan 12 2009 - 09:31:51 CST)
  • Re: [AMBER] problem building AmberTools/sleap on AIX (Fri Jan 09 2009 - 15:49:17 CST)
  • Re: [AMBER] problem building AmberTools/sleap on AIX (Fri Jan 09 2009 - 10:46:59 CST)
  • [AMBER] problem building AmberTools/sleap on AIX (Fri Jan 09 2009 - 10:27:56 CST)
• Simone Swift
  • [AMBER] Using a restart file (Thu Jan 15 2009 - 10:40:38 CST)
• steinbrt_at_rci.rutgers.edu
  • Re: [AMBER] PTRAJ: solvent accessible surface area (Wed Jan 14 2009 - 08:59:19 CST)
  • Re: [AMBER] crystal waters (Mon Jan 12 2009 - 14:37:34 CST)
  • Re: [AMBER] crystal waters (Mon Jan 12 2009 - 14:16:25 CST)
• Swanand Gore
  • [AMBER] PhD position in Computational Structural Biology at Cambridge, UK (Wed Jan 28 2009 - 04:31:16 CST)
• Swarup Gupta
  • [AMBER] AMBER efficiency: Intel vs. AMD (Sun Jan 18 2009 - 19:43:32 CST)
• Thomas Cheatham III
  • Re: [AMBER] distance restraint and SHAKE (Tue Jan 27 2009 - 12:16:30 CST)
  • Re: [AMBER] prot-DNA simulation (Wed Jan 21 2009 - 15:55:52 CST)
• vallespardojl_at_chem.leidenuniv.nl
  • [AMBER] charges in topology file (Wed Jan 14 2009 - 04:33:35 CST)
  • [AMBER] AMBER: Problems in solvation with xleap (Wed Jan 07 2009 - 07:39:56 CST)
• Waqas Nasir
  • [AMBER] Problem in watercap simulation, PB_Bomb (Thu Jan 29 2009 - 08:21:20 CST)
  • [AMBER] Problem in pb simulation, PB_Bomb (Thu Jan 29 2009 - 03:08:22 CST)
  • Re: [AMBER] Watercap... some querries (Wed Jan 28 2009 - 09:10:48 CST)
  • [AMBER] Watercap... some querries (Wed Jan 28 2009 - 08:54:00 CST)
• Wei Huang
  • RE: [AMBER] using binary trajectories from NAMD in PTRAJ (Mon Jan 26 2009 - 08:41:22 CST)
• Wei Zhang
  • Re: [AMBER] generating top file using antechmaber (Thu Jan 29 2009 - 10:26:22 CST)
  • Re: [AMBER] generating top file using antechmaber (Wed Jan 28 2009 - 14:23:21 CST)
  • Re: [AMBER] generating top file using antechmaber (Wed Jan 28 2009 - 14:12:20 CST)
  • Re: [AMBER] problem building AmberTools/sleap on AIX (Fri Jan 16 2009 - 15:19:42 CST)
  • RE: [AMBER] Re: AMBER: questions about equilibram (Tue Jan 13 2009 - 06:58:51 CST)
  • Re: [AMBER] problem building AmberTools/sleap on AIX (Fri Jan 09 2009 - 16:28:08 CST)
  • Re: [AMBER] problem building AmberTools/sleap on AIX (Fri Jan 09 2009 - 10:37:43 CST)
  • AMBER: questions about equilibram (Tue Jan 06 2009 - 05:18:47 CST)
• WJ Ding
  • Re: AMBER: CHCl3 solvent box (Mon Jan 05 2009 - 15:21:32 CST)
  • AMBER: CHCl3 solvent box (Sun Jan 04 2009 - 16:24:48 CST)
• wl2290_at_columbia.edu
  • RE: [AMBER] mairun (Thu Jan 08 2009 - 17:11:56 CST)
  • RE: [AMBER] mairun (Thu Jan 08 2009 - 16:33:52 CST)
  • [AMBER] mairun (Thu Jan 08 2009 - 11:30:05 CST)
  • AMBER: install amber10 (Tue Jan 06 2009 - 11:23:01 CST)
• xiaonan zhang
  • Re: [AMBER] error on open distatance restraint (Sat Jan 24 2009 - 21:56:02 CST)
• xxxzzzyyy xxxzzzyyy
  • [AMBER] Writing out trajectory in NAB (Mon Jan 12 2009 - 10:43:33 CST)
• Ye MEI
  • Re: [AMBER] AMBER efficiency: Intel vs. AMD (Sun Jan 18 2009 - 20:20:47 CST)
  • Re: Re: [AMBER] ambpdb is changing atom names, a feature or bug? (Sat Jan 10 2009 - 02:03:10 CST)
  • AMBER: bug of the mm_pbsa module in ambertools 1.2 (Mon Jan 05 2009 - 09:28:02 CST)
• Yi Mao
  • [AMBER] deduce correlation from covariance matrix (Sun Jan 25 2009 - 15:01:05 CST)
  • Re: [AMBER] four prepin/frcmod files be read simultaneously by leap (Wed Jan 07 2009 - 10:38:52 CST)
  • [AMBER] four prepin/frcmod files be read simultaneously by leap (Wed Jan 07 2009 - 08:46:05 CST)
• Yu Chen
  • Re: [AMBER] Re: AMBER: ligand parameter (Sun Jan 11 2009 - 19:25:41 CST)
• z g
  • Re: [AMBER] errors on REMD (Thu Jan 22 2009 - 19:02:08 CST)
  • Re: [AMBER] errors on REMD (Tue Jan 20 2009 - 07:39:12 CST)
  • [AMBER] errors on REMD (Mon Jan 19 2009 - 20:41:35 CST)
  • [AMBER] restraint of REMD (Thu Jan 15 2009 - 20:51:46 CST)
• zgong.hust
  • Re: [AMBER] RE: same result (Thu Jan 08 2009 - 02:49:29 CST)

Last message date: Thu Dec 31 2009 - 22:57:46 CST
Archived on: Thu Dec 31 2009 - 22:58:32 CST