AMBER Archive (2009)

Subject: [AMBER] failure to run antechamber with amber 10

From: Francesco Pietra (chiendarret_at_gmail.com)
Date: Thu Jan 29 2009 - 16:29:18 CST

hi:

with amber10/ambertools 1.2 i was unable to run antechamber, as
indicated below (i can't remember if this is the 1st time i am dealing
with antechamber in ambertools 1.2)

$AMBERHOME/exe/antechamber -i myfile.pdb -fi pdb -o myfile.prepin -fo
prepi -c bcc -s 2

returned the error:

Error: cannot run "/usr/local/amber10/bin/bondtype -j full -i
ANTECHAMBER_BOND_TYPE.AC0 -o ANTECHAMBER_BOND_TYPE.AC -f ac" in
judgebondtype() of antechamber.c properly, exit
Running: /usr/local/amber10/bin/bondtype -j full -i
ANTECHAMBER_BOND_TYPE.AC0 -o ANTECHAMBER_BOND_TYPE.AC -f ac

===
with amber 9 - installed in the same machine - the above procedure
(without retyping) could be carried out correctly.

thanks for detecting the origin of the problem

francesco pietra

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