AMBER Archive (2009)

Subject: RE: [AMBER] multisander error

From: Ross Walker (ross_at_rosswalker.co.uk)
Date: Mon Jan 12 2009 - 16:20:06 CST

Hi Justine,

> Running multisander version of sander amber9
> Total processors = 4
> Number of groups = 2
>
>...
>
> rank 2 in job 1 compute-0-19_48554 caused collective abort of all ranks
> exit status of rank 2: killed by signal 9

> I have no idea what is wrong and am hoping someone can assist me in this
> detective work!

There should be more output files than just this master sander.out log. Each
group should have produced its own output and the error message that caused
one of these groups to quit the calculation should be in its output file.
These files would have been specified in the groupfile.

All the best
Ross

/\
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|\oss Walker

| Assistant Research Professor |
| San Diego Supercomputer Center |
| Tel: +1 858 822 0854 | EMail:- ross_at_rosswalker.co.uk |
| http://www.rosswalker.co.uk | PGP Key available on request |

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