AMBER Archive (2009)

Subject: Re: [AMBER] Alpha helix plot

• Previous message: Carra, Claudio (JSC-SK)[USRA]: "[AMBER] thermo, entropy by quasiharmonic method"
• In reply to: Beale, John: "[AMBER] Alpha helix plot"
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you cna use DSSP in ptraj and write a script to process the results. works
fine

On Thu, Jan 29, 2009 at 3:10 PM, Beale, John <jbeale_at_stlcop.edu> wrote:

> I am doing dynamics simulations on a peptide that has predominately
> alpha helical character, but the amount of helix changes during MD. I
> would like to make a plot of the percentage alpha helix of the protein
> over the duration of the simulation. Is there a way to do this?
>
>
>
> John
>
>
>
>
>
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• Previous message: Carra, Claudio (JSC-SK)[USRA]: "[AMBER] thermo, entropy by quasiharmonic method"
• In reply to: Beale, John: "[AMBER] Alpha helix plot"
• Messages sorted by: [ date ] [ thread ] [ subject ] [ author ]