AMBER Archive (2009)

Subject: Re: [AMBER] Re: AMBER: ligand parameter

From: Yu Chen (chen_at_hhmi.umbc.edu)
Date: Sun Jan 11 2009 - 19:25:41 CST

>> With regard to remote access and xleap, if you are using ssh, you
>> can add
> the -X option to forward your X session, and then you can open up
> xleap on
> your local machine, assuming you have X11 or Cygwin/X installed on
> your
> local machine.
>
> I do use ssh and have x11 in the Mac. I try the following:
>
> guanine.1% setenv AMBERHOME /usr/local/amber7
> guanine.2% $AMBERHOME/exe/xleap -X
>

The "-X" is used with ssh, not xleap.

 From your computer, open a terminal, type: ssh -X [remote computer]
then run "xleap" after login to your remote computer.

CY

> It just hang there and nothing happen. What is the exact command for
> add -X
> option?
>
> Thank you
>
> Bo
>
>
> On Mon, Jan 12, 2009 at 11:39 AM, David Watson
> <dewatson_at_olemiss.edu> wrote:
>
>> On Jan 11, 2009, at 6:20 PM, Bo Baker wrote:
>>
>> Dear Ross:
>>>
>>> Thank you for your suggestion.
>>>
>>> My problem here is: I use remote access to amber and I don't have
>>> the
>>> xleap
>>> in my local PC. Also leaprc.ff99SB is not available for Amber7.
>>> Referring
>>>
>> <snip>
>>
>> With regard to remote access and xleap, if you are using ssh, you
>> can add
>> the -X option to forward your X session, and then you can open up
>> xleap on
>> your local machine, assuming you have X11 or Cygwin/X installed on
>> your
>> local machine.
>>
>> Hope that helps.
>>
>>
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>>
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