AMBER Archive (2009)

Subject: [AMBER] mairun

From: wl2290_at_columbia.edu
Date: Thu Jan 08 2009 - 11:30:05 CST

I am testing parallel programs which have been installed on our linux cluster:

ls -l /opt/amber10/bin/mpirun
-rwxr-xr-x 1 root root 228654 2009-01-06 15:12 /opt/amber10/bin/mpirun
ls -l /opt/amber10/exe/sander.MPI
-rwxr-xr-x 1 root root 5500906 2009-01-06 15:22 /opt/amber10/exe/sander.MPI

Run test/cytosine> /opt/amber10/bin/mpirun -np 4
/opt/amber10/exe/sander.MPI -O -i in.md -c crd.md.23 -o cytosine.out

--> no lamd running on the host

run /opt/amber10/bin/lamboot

   --> LAM 7.1.3 - Indiana University

then run the test again, and got the same message "no lamd running on
the host"

I was hoping that you could help me.

Thank you!
Wen

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