AMBER Archive (2009)

Subject: [AMBER] restraint of REMD

From: z g (zgong.hust_at_gmail.com)
Date: Thu Jan 15 2009 - 20:51:46 CST

Dear sir :
          I have seen the tutorials of Replica Exchange Simulations with
AMBER 10 online. I have some questions about Generating chirality restraints
        Whether I must restraint the moleculars before I do the REMD on high
temperatures?
       I want to do the REMD on RNA, Whether the program "makeCHIR_RST"
suitable for RNA? How can I do this ?
Thank you !
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