AMBER Archive (2009)

Subject: [AMBER] Alpha helix plot

From: Beale, John (jbeale_at_stlcop.edu)
Date: Thu Jan 29 2009 - 14:10:11 CST

I am doing dynamics simulations on a peptide that has predominately
alpha helical character, but the amount of helix changes during MD. I
would like to make a plot of the percentage alpha helix of the protein
over the duration of the simulation. Is there a way to do this?

 

John

 

 

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