AMBER Archive (2009)

Subject: [AMBER] xmgrace and plotting time evolution of a defined variable

From: Naser Alijabbari (na3m_at_virginia.edu)
Date: Wed Jan 14 2009 - 18:20:31 CST

Hello,

I can across the following thread
http://archive.ambermd.org/200607/0040.html, where it is mentioned that one
can input a trajectory file into xmgrace and "examine the time evolution of
such a defined variable above using: Graphics-->Labels-->Bonds, select
bond/angle/torsion defined and then hit "graph"." The variable in the quote
can be bond length, bond angle etc. between two atoms.

If anyone does this regularly, would they please provide more pointers (I
don't even see Graphics/Labels/Bonds in the xmgrace menu. I recently
installed xmgrace on Cygwin and it fought me every point of the way. I gave
up with the X11 libraries on Fedora 9 so everything is text based in my
terminal).
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