AMBER Archive (2009)

Subject: RE: [AMBER] using binary trajectories from NAMD in PTRAJ

From: Wei Huang (whuang_at_cct.lsu.edu)
Date: Mon Jan 26 2009 - 08:41:22 CST

Hi Karthik,

Yes, it is supported by ptraj to analyze dcd trajectory from NAMD. But you
need a psf file in CHARMM format (notice: this is not the default psf file
in NAMD) or an AMBER topology file to load up the trajectory.

Best,
Wei

-----Original Message-----
From: amber-bounces_at_ambermd.org [mailto:amber-bounces_at_ambermd.org] On Behalf
Of karthik s
Sent: Monday, January 26, 2009 1:11 AM
To: amber_at_ambermd.org
Subject: [AMBER] using binary trajectories from NAMD in PTRAJ

Dear Users,
                I simulated by protein system in NAMD. I wish to analyse the
datas in PTRAJ module of AMBER. Is the format of binary trajectories (.dcd)
from NAMD supported in AMBER. kindly help me in this regard.
Thanks in advance. 

-- 
karthik
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