AMBER Archive (2009)
Subject: Re: [AMBER] "Could not find bond parameter"
From: George Tzotzos (gtzotzos_at_mac.com)
I am experiencing the following problem when trying to save the parameter file of my protein.
<saveamberparm> generates the following output:
Could not find bond parameter for: SH - SH
Building angle parameters.
I'm dealing with a small protein with 3 disulfide bonds.
I'm using leaprc.ff99SB as a forcefield
Any help in resolving this problem would be greatly appreciated