AMBER Archive (2009)

Subject: [AMBER] sander not working

From: archana sonawani (ask.archana_at_gmail.com)
Date: Thu Jan 15 2009 - 23:52:48 CST

Hi,
           I am preparing co-ordinate and topology files using xleap in
amber10 and then run minimization using following command

$AMBERHOME/exe/sander -O -i min1.in -o min1.out -c crd.md.23

The cursor just blinks and the min1.out is blank.
 when i use the co-ordinate and topology files for any example, the sander
jobs run but when I make the files using xleap (focefield 99SB) which is
similar to the co-ordinate and topology files from example, still sander
dont run. I am puzzled why this happens?????????
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