AMBER Archive (2008) - Feb 2008 By DateMost recent messages
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Starting: Fri Feb 01 2008 - 13:02:30 CST
Ending: Fri Feb 29 2008 - 12:56:01 CST
- AMBER: hbonds in first solvation shells Ignacio J. General (Fri Feb 01 2008 - 13:02:30 CST)
- AMBER: silica slab / FF Arturas Ziemys (Fri Feb 01 2008 - 15:42:13 CST)
- AMBER: Entropy calculations using NMODE saurabh agrawal (Sat Feb 02 2008 - 01:18:24 CST)
- Re: AMBER: Entropy calculations using NMODE Eddie Mende (Sat Feb 02 2008 - 07:17:06 CST)
- Re: AMBER: Entropy calculations using NMODE saurabh agrawal (Sat Feb 02 2008 - 07:50:13 CST)
- AMBER: twin cut-off radii Sandeep Kaushik (Mon Feb 04 2008 - 03:17:57 CST)
- AMBER: principal component analysis rams rams (Mon Feb 04 2008 - 06:26:31 CST)
- Re: AMBER: principal component analysis Mark Williamson (Mon Feb 04 2008 - 06:55:47 CST)
- AMBER: (no subject) Syed Tarique Moin (Mon Feb 04 2008 - 08:07:26 CST)
- Re: AMBER: principal component analysis rams rams (Mon Feb 04 2008 - 09:45:17 CST)
- Re: AMBER: twin cut-off radii David A. Case (Mon Feb 04 2008 - 10:09:51 CST)
- Re: AMBER: twin cut-off radii Robert Duke (Mon Feb 04 2008 - 10:55:06 CST)
- AMBER: Re: bad atom type f(fluorine) in MM-PBSA kanazta1_at_yahoo.co.jp (Mon Feb 04 2008 - 11:32:51 CST)
- AMBER: time autocorrelation: ?? fatima.chami_at_durham.ac.uk (Mon Feb 04 2008 - 12:05:47 CST)
- RE: AMBER: principal component analysis Marco A. Lopez (Mon Feb 04 2008 - 13:22:36 CST)
- AMBER: Using antechamber without AMBER program Surasak Chunsrivirot (Mon Feb 04 2008 - 14:58:59 CST)
- Re: AMBER: Using antechamber without AMBER program Scott Brozell (Mon Feb 04 2008 - 15:32:11 CST)
- Re: AMBER: Using antechamber without AMBER program David A. Case (Mon Feb 04 2008 - 15:46:00 CST)
- AMBER: Amber 9 installation Taufik Al-Sarraj (Mon Feb 04 2008 - 15:53:23 CST)
- Re: AMBER: Amber 9 installation Yu Chen (Mon Feb 04 2008 - 16:10:37 CST)
- RE: AMBER: Amber 9 installation Ross Walker (Mon Feb 04 2008 - 16:21:41 CST)
- AMBER: VLIMIT units; TGTFITMASK Hopkins, Robert (Mon Feb 04 2008 - 16:55:03 CST)
- Re: AMBER: VLIMIT units; TGTFITMASK David A. Case (Mon Feb 04 2008 - 17:18:39 CST)
- Re: AMBER: Using antechamber without AMBER program Surasak Chunsrivirot (Mon Feb 04 2008 - 18:22:38 CST)
- Re: AMBER: Using antechamber without AMBER program Surasak Chunsrivirot (Mon Feb 04 2008 - 18:38:07 CST)
- Re: AMBER: Using antechamber without AMBER program David A. Case (Mon Feb 04 2008 - 19:55:47 CST)
- AMBER: mm_pbsa: vertex atom mismatch Marc Lindner (Tue Feb 05 2008 - 04:47:23 CST)
- RE: AMBER: VLIMIT units; TGTFITMASK Hopkins, Robert (Tue Feb 05 2008 - 09:08:07 CST)
- AMBER: Amber 9 installation Taufik Al-Sarraj (Tue Feb 05 2008 - 09:14:56 CST)
- AMBER: infinite polymers in CHARMM David A. Case (Tue Feb 05 2008 - 10:39:45 CST)
- AMBER: silica slab Arturas Ziemys (Tue Feb 05 2008 - 11:28:55 CST)
- Re: AMBER: silica slab David A. Case (Tue Feb 05 2008 - 12:00:33 CST)
- Re: AMBER: silica slab Arturas Ziemys (Tue Feb 05 2008 - 12:35:03 CST)
- AMBER: Problem with energy decomposition in MMPBSA alfredoq_at_mail.fcq.unc.edu.ar (Tue Feb 05 2008 - 15:32:05 CST)
- AMBER: segmentation fault while generating the covariance matrix rams rams (Tue Feb 05 2008 - 23:12:29 CST)
- AMBER: re MD simulations of NMR structures: minimized average structure vs. ensemble member Vidana.Epa_at_csiro.au (Wed Feb 06 2008 - 00:08:19 CST)
- Fwd: AMBER: (no subject) Syed Tarique Moin (Wed Feb 06 2008 - 02:00:23 CST)
- AMBER: Query related to implicit solvent EXTDIEL S.Sundar Raman (Wed Feb 06 2008 - 06:03:02 CST)
- AMBER: Binary restart file !! Sampath Koppole (Wed Feb 06 2008 - 08:41:03 CST)
- Re: AMBER: Query related to implicit solvent EXTDIEL David A. Case (Wed Feb 06 2008 - 10:31:08 CST)
- Re: AMBER: Binary restart file !! David A. Case (Wed Feb 06 2008 - 10:35:42 CST)
- Re: AMBER: Binary restart file !! Sampath Koppole (Wed Feb 06 2008 - 11:01:43 CST)
- AMBER: using NAB to calculate entropy Wang, Xuelin (Wed Feb 06 2008 - 11:52:06 CST)
- RE: AMBER: silica slab Steve Spronk (Wed Feb 06 2008 - 13:01:22 CST)
- Re: AMBER: using NAB to calculate entropy David A. Case (Wed Feb 06 2008 - 14:21:28 CST)
- RE: AMBER: using NAB to calculate entropy. . Wang, Xuelin (Wed Feb 06 2008 - 15:00:46 CST)
- AMBER: Amber compilation with ifort Andrey Semichaevsky (Wed Feb 06 2008 - 15:23:26 CST)
- Re: AMBER: using NAB to calculate entropy. . David A. Case (Wed Feb 06 2008 - 15:37:40 CST)
- Re: AMBER: Amber compilation with ifort David A. Case (Wed Feb 06 2008 - 15:47:20 CST)
- RE: AMBER: Amber compilation with ifort Ross Walker (Wed Feb 06 2008 - 16:06:20 CST)
- AMBER: Amber 8 Equivalent of the Amber 5 - Edit program Mohd Farid Ismail (Wed Feb 06 2008 - 16:07:55 CST)
- Re: AMBER: Amber compilation with ifort Mark Williamson (Wed Feb 06 2008 - 16:24:16 CST)
- Re: AMBER: silica slab Steven Winfield (Wed Feb 06 2008 - 17:48:59 CST)
- Re: AMBER: Amber 8 Equivalent of the Amber 5 - Edit program Bill Ross (Wed Feb 06 2008 - 18:18:38 CST)
- RE: AMBER: Amber 8 Equivalent of the Amber 5 - Edit program Ross Walker (Wed Feb 06 2008 - 18:35:33 CST)
- AMBER: Problem:neturalization jani sahil (Wed Feb 06 2008 - 23:03:35 CST)
- AMBER: A new program for doing RESP David Cerutti (Thu Feb 07 2008 - 00:56:04 CST)
- Re: AMBER: Problem:neturalization David Cerutti (Thu Feb 07 2008 - 01:42:39 CST)
- Re: AMBER: Amber compilation with ifort Atro Tossavainen (Thu Feb 07 2008 - 01:45:09 CST)
- AMBER: disulfide bridge with ff03ua FF Marcin Krol (Thu Feb 07 2008 - 08:50:16 CST)
- AMBER: Deleting solute from box Kevin Davies (Thu Feb 07 2008 - 14:45:48 CST)
- Re: AMBER: Deleting solute from box Bill Ross (Thu Feb 07 2008 - 15:37:27 CST)
- RE: AMBER: QMMM with printcharges Ross Walker (Thu Feb 07 2008 - 16:12:17 CST)
- Re: AMBER: Deleting solute from box Kevin Davies (Thu Feb 07 2008 - 16:21:22 CST)
- AMBER: Error while compiling Amber Lili Peng (Thu Feb 07 2008 - 19:14:42 CST)
- Re: AMBER: Error while compiling Amber David A. Case (Thu Feb 07 2008 - 19:42:31 CST)
- AMBER: WARNING in readAmberTrajectory(): fsetpos() failed on when looking for box coordinates! rams rams (Thu Feb 07 2008 - 23:36:15 CST)
- AMBER: Which install compiler and flags? Sam Kaye (Fri Feb 08 2008 - 04:07:15 CST)
- AMBER: PB Bomb in pb_atmlist(): maxnba too short Eddie Mende (Fri Feb 08 2008 - 07:22:07 CST)
- Re: AMBER: Using antechamber without AMBER program Junmei Wang (Fri Feb 08 2008 - 09:10:27 CST)
- Re: AMBER: disulfide bridge with ff03ua FF raja pandian (Fri Feb 08 2008 - 10:17:50 CST)
- RE: AMBER: WARNING in readAmberTrajectory(): fsetpos() failed on when looking for box coordinates! Ross Walker (Fri Feb 08 2008 - 10:40:25 CST)
- RE: AMBER: Which install compiler and flags? Ross Walker (Fri Feb 08 2008 - 10:52:24 CST)
- RE: AMBER: PB Bomb in pb_atmlist(): maxnba too short Ross Walker (Fri Feb 08 2008 - 10:53:56 CST)
- Re: AMBER: disulfide bridge with ff03ua FF Marcin Krol (Fri Feb 08 2008 - 11:00:25 CST)
- Re: AMBER: Which install compiler and flags? David A. Case (Fri Feb 08 2008 - 11:04:55 CST)
- AMBER: Antechamber/mopac query Lynn F. Ten Eyck (Fri Feb 08 2008 - 19:15:12 CST)
- Re: AMBER: Error while compiling Amber Lili Peng (Fri Feb 08 2008 - 19:51:55 CST)
- Re: AMBER: disulfide bridge with ff03ua FF raja pandian (Fri Feb 08 2008 - 22:17:48 CST)
- RE: AMBER: Error while compiling Amber Ross Walker (Sat Feb 09 2008 - 11:58:59 CST)
- Re: AMBER: Error while compiling Amber Lili Peng (Sat Feb 09 2008 - 13:11:39 CST)
- RE: AMBER: Error while compiling Amber Ross Walker (Sat Feb 09 2008 - 13:40:41 CST)
- AMBER: Input file for Minimization Campbell, Patrick (Sat Feb 09 2008 - 15:18:51 CST)
- Re: AMBER: Error while compiling Amber chen (Sat Feb 09 2008 - 18:00:09 CST)
- RE: AMBER: Input file for Minimization Ross Walker (Sun Feb 10 2008 - 12:55:34 CST)
- Re: AMBER: WARNING in readAmberTrajectory(): fsetpos() failed on when looking for box coordinates! rams rams (Sun Feb 10 2008 - 23:32:01 CST)
- Re: AMBER: disulfide bridge with ff03ua FF Marcin Krol (Mon Feb 11 2008 - 09:01:30 CST)
- Re: AMBER: Input file for Minimization Carlos Simmerling (Mon Feb 11 2008 - 11:06:42 CST)
- AMBER: leaprc help snoze pa (Mon Feb 11 2008 - 11:50:30 CST)
- Re: AMBER: leaprc help Carlos Simmerling (Mon Feb 11 2008 - 11:56:38 CST)
- Re: AMBER: leaprc help snoze pa (Mon Feb 11 2008 - 15:08:14 CST)
- AMBER: mm_pbsa problem Badry Bursulaya (Mon Feb 11 2008 - 16:45:29 CST)
- Re: AMBER: leaprc help Reena ..... (Mon Feb 11 2008 - 22:19:22 CST)
- AMBER: Non-polar Parameters For MM_PBSA Calculation Neil Bruce (Tue Feb 12 2008 - 05:54:02 CST)
- AMBER: PKa calculation Wang, Xuelin (Tue Feb 12 2008 - 10:45:16 CST)
- Re: AMBER: PKa calculation David A. Case (Tue Feb 12 2008 - 11:15:55 CST)
- RE: AMBER: Input file for Minimization Campbell, Patrick (Tue Feb 12 2008 - 11:43:34 CST)
- Re: AMBER: Input file for Minimization Carlos Simmerling (Tue Feb 12 2008 - 11:55:18 CST)
- Re: AMBER: disulfide bridge with ff03ua FF Ray Luo (Tue Feb 12 2008 - 16:52:37 CST)
- RE: AMBER: Non-polar Parameters For MM_PBSA Calculation rluo_at_uci.edu (Tue Feb 12 2008 - 17:23:40 CST)
- AMBER: RDCs in AMBER 10 Douglas Kojetin (Tue Feb 12 2008 - 17:39:37 CST)
- Re: AMBER: RDCs in AMBER 10 David A. Case (Tue Feb 12 2008 - 17:56:52 CST)
- Re: AMBER: RDCs in AMBER 10 Douglas Kojetin (Tue Feb 12 2008 - 19:01:30 CST)
- AMBER: (no subject) Syed Tarique Moin (Wed Feb 13 2008 - 04:55:02 CST)
- AMBER: AMBER 8 problems on RHEL4/Opteron/PGF 7.0-7 Atro Tossavainen (Wed Feb 13 2008 - 07:31:54 CST)
- AMBER: Is boiling point a good way to validate solvent paramters? Mike Wykes (Wed Feb 13 2008 - 08:08:25 CST)
- RE: AMBER: AMBER 8 problems on RHEL4/Opteron/PGF 7.0-7 Ross Walker (Wed Feb 13 2008 - 09:20:07 CST)
- RE: AMBER: (no subject) Ross Walker (Wed Feb 13 2008 - 09:21:52 CST)
- Re: AMBER: disulfide bridge with ff03ua FF Marcin Krol (Wed Feb 13 2008 - 09:32:18 CST)
- AMBER: sander error on Make test.serial Evan Kelly (Wed Feb 13 2008 - 14:26:25 CST)
- Re: AMBER: AMBER 8 problems on RHEL4/Opteron/PGF 7.0-7 Atro Tossavainen (Wed Feb 13 2008 - 14:27:29 CST)
- Re: AMBER: Is boiling point a good way to validate solvent paramters? David A. Case (Wed Feb 13 2008 - 14:34:01 CST)
- Re: AMBER: AMBER 8 problems on RHEL4/Opteron/PGF 7.0-7 Atro Tossavainen (Wed Feb 13 2008 - 14:49:57 CST)
- Re: AMBER: sander error on Make test.serial Evan Kelly (Wed Feb 13 2008 - 15:03:58 CST)
- AMBER: ambmask problem Hopkins, Robert (Wed Feb 13 2008 - 18:42:53 CST)
- AMBER: AMBER parameters for Chlorophyll Sreeja Parameswaran (Wed Feb 13 2008 - 19:31:05 CST)
- AMBER: xmgr graphics display program Hopkins, Robert (Wed Feb 13 2008 - 20:02:23 CST)
- Re: AMBER: xmgr graphics display program Gustavo Seabra (Wed Feb 13 2008 - 20:29:26 CST)
- RE: AMBER: (no subject) Syed Tarique Moin (Wed Feb 13 2008 - 22:58:56 CST)
- Re: AMBER: xmgr graphics display program David A. Case (Wed Feb 13 2008 - 23:46:40 CST)
- Re: AMBER: sander error on Make test.serial David A. Case (Wed Feb 13 2008 - 23:57:32 CST)
- Re: AMBER: AMBER 8 problems on RHEL4/Opteron/PGF 7.0-7 Atro Tossavainen (Thu Feb 14 2008 - 01:02:22 CST)
- AMBER: mpd error in submitting parallel job Lili Peng (Thu Feb 14 2008 - 03:11:25 CST)
- Re: AMBER: Error while compiling Amber Lili Peng (Thu Feb 14 2008 - 03:09:22 CST)
- Re: AMBER: Error while compiling Amber Jack Lei (Thu Feb 14 2008 - 06:50:57 CST)
- Re: AMBER: Error while compiling Amber Lili Peng (Thu Feb 14 2008 - 11:41:18 CST)
- Re: AMBER: sander error on Make test.serial Evan Kelly (Thu Feb 14 2008 - 12:36:25 CST)
- Re: AMBER: mpd error in submitting parallel job Gustavo Seabra (Thu Feb 14 2008 - 13:45:47 CST)
- Re: AMBER: xmgr graphics display program Junmei Wang (Thu Feb 14 2008 - 14:04:16 CST)
- Re: AMBER: Error while compiling Amber Junmei Wang (Thu Feb 14 2008 - 15:13:30 CST)
- Re: AMBER: Error while compiling Amber Lili Peng (Thu Feb 14 2008 - 16:24:02 CST)
- AMBER: Distance restraints between com of two groups of residues Sudha Mani Karra (Thu Feb 14 2008 - 16:20:26 CST)
- RE: AMBER: mpd error in submitting parallel job Ross Walker (Thu Feb 14 2008 - 22:11:23 CST)
- AMBER: print distance between atoms during simulation within sander itsself Vlad Cojocaru (Fri Feb 15 2008 - 08:06:24 CST)
- AMBER: setbox for solvateoct model Wang, Xuelin (Fri Feb 15 2008 - 09:22:07 CST)
- RE: AMBER: Is boiling point a good way to validate solvent paramters? Mike Wykes (Fri Feb 15 2008 - 09:27:35 CST)
- Re: AMBER: Error while compiling Amber Junmei Wang (Fri Feb 15 2008 - 11:16:47 CST)
- Re: AMBER: ambmask problem David A. Case (Fri Feb 15 2008 - 11:32:46 CST)
- AMBER: problem with ambmask David A. Case (Fri Feb 15 2008 - 12:07:54 CST)
- AMBER: using NAB to calculate normal modes Z. Nevin Gerek (Fri Feb 15 2008 - 14:24:50 CST)
- Re: AMBER: using NAB to calculate normal modes David A. Case (Fri Feb 15 2008 - 16:17:23 CST)
- RE: AMBER: using NAB to calculate normal modes. . Wang, Xuelin (Fri Feb 15 2008 - 16:29:55 CST)
- Re: AMBER: using NAB to calculate normal modes Andreas Svrcek-Seiler (Fri Feb 15 2008 - 16:23:30 CST)
- Re: AMBER: using NAB to calculate normal modes. . David A. Case (Fri Feb 15 2008 - 17:54:46 CST)
- Re: AMBER: Is boiling point a good way to validate solvent paramters? David A. Case (Fri Feb 15 2008 - 20:49:12 CST)
- Re: AMBER: setbox for solvateoct model David A. Case (Fri Feb 15 2008 - 20:52:14 CST)
- RE: AMBER: Is boiling point a good way to validate solvent paramters? FyD (Sat Feb 16 2008 - 01:31:14 CST)
- AMBER: matrix correl David Beveridge (Sat Feb 16 2008 - 03:09:29 CST)
- Re: AMBER: AMBER parameters for Chlorophyll mathew k varghese (Sat Feb 16 2008 - 08:09:30 CST)
- Re: AMBER: AMBER parameters for Chlorophyll Sreeja Parameswaran (Sat Feb 16 2008 - 08:45:32 CST)
- Re: AMBER: AMBER parameters for Chlorophyll David LeBard (Sat Feb 16 2008 - 11:25:51 CST)
- Re: AMBER: xmgr graphics display program Hopkins, Robert (Sun Feb 17 2008 - 14:38:41 CST)
- AMBER: setting perioding box in AMBER Vijay Manickam Achari (Sun Feb 17 2008 - 19:47:17 CST)
- Re: AMBER: setting perioding box in AMBER David A. Case (Sun Feb 17 2008 - 20:14:31 CST)
- Re: AMBER: matrix correl Holger Gohlke (Mon Feb 18 2008 - 06:56:07 CST)
- AMBER: TERs Steve Seibold (Mon Feb 18 2008 - 07:19:39 CST)
- Re: AMBER: TERs David A. Case (Mon Feb 18 2008 - 10:49:55 CST)
- Re: AMBER: TERs Thomas Cheatham (Mon Feb 18 2008 - 11:18:36 CST)
- RE: AMBER: TERs Steve Seibold (Mon Feb 18 2008 - 11:51:51 CST)
- RE: AMBER: problem with ambmask Hopkins, Robert (Mon Feb 18 2008 - 15:57:07 CST)
- Re: AMBER: setting perioding box in AMBER Vijay Manickam Achari (Tue Feb 19 2008 - 00:00:06 CST)
- AMBER: parameters of nonbonded potentials Alexander Klenner (Tue Feb 19 2008 - 04:43:27 CST)
- AMBER: Generating RESP charges Christopher Illingworth (Tue Feb 19 2008 - 05:39:22 CST)
- Re: AMBER: Generating RESP charges Junmei Wang (Tue Feb 19 2008 - 09:05:39 CST)
- Re: AMBER: parameters of nonbonded potentials David A. Case (Tue Feb 19 2008 - 10:05:07 CST)
- Re: AMBER: Generating RESP charges Christopher Illingworth (Tue Feb 19 2008 - 10:11:21 CST)
- Re: AMBER: Generating RESP charges Junmei Wang (Tue Feb 19 2008 - 12:04:44 CST)
- Re: AMBER: Generating RESP charges M. L. Dodson (Tue Feb 19 2008 - 12:38:22 CST)
- Re: AMBER: Generating RESP charges Junmei Wang (Tue Feb 19 2008 - 13:22:59 CST)
- AMBER: united atom force field: antechamber fatima.chami_at_durham.ac.uk (Tue Feb 19 2008 - 15:59:42 CST)
- Re: AMBER: united atom force field: antechamber David A. Case (Tue Feb 19 2008 - 17:33:32 CST)
- AMBER: NAB to calcuate entropy Wang, Xuelin (Tue Feb 19 2008 - 17:58:15 CST)
- Re: AMBER: NAB to calcuate entropy David A. Case (Tue Feb 19 2008 - 19:33:59 CST)
- AMBER: Regarding:PME and neturalization jani sahil (Tue Feb 19 2008 - 23:12:45 CST)
- AMBER: is that possible fix box size in constant pressure MD Vijay Manickam Achari (Tue Feb 19 2008 - 23:39:46 CST)
- Re: AMBER: Regarding:PME and neturalization Lars Skjćrven (Wed Feb 20 2008 - 02:39:59 CST)
- AMBER: Dimension of the solvated box? abiram abiram (Wed Feb 20 2008 - 07:54:08 CST)
- Re: AMBER: Dimension of the solvated box? David A. Case (Wed Feb 20 2008 - 10:31:36 CST)
- AMBER: Problem with "trajout pdb" Yi-Ming Cheng (Wed Feb 20 2008 - 10:53:32 CST)
- AMBER: saveAmberPrep in internal coordinates Xu, Huafeng (Wed Feb 20 2008 - 11:02:00 CST)
- RE: AMBER: matrix correl Ibrahim Moustafa (Wed Feb 20 2008 - 11:22:53 CST)
- Re: AMBER: matrix correl Lars Skjćrven (Wed Feb 20 2008 - 11:35:30 CST)
- Re: AMBER: saveAmberPrep in internal coordinates Junmei Wang (Wed Feb 20 2008 - 11:43:31 CST)
- RE: AMBER: matrix correl Ibrahim Moustafa (Wed Feb 20 2008 - 12:19:31 CST)
- Re: AMBER: NAB to calcuate entropy Z. Nevin Gerek (Wed Feb 20 2008 - 14:38:28 CST)
- RE: AMBER: NAB to calcuate entropy. . Wang, Xuelin (Wed Feb 20 2008 - 15:21:15 CST)
- Re: AMBER: NAB to calcuate entropy. . Z. Nevin Gerek (Wed Feb 20 2008 - 15:34:33 CST)
- Re: AMBER: NAB to calcuate entropy David A. Case (Wed Feb 20 2008 - 15:36:15 CST)
- RE: AMBER: NAB to calcuate entropy. . Wang, Xuelin (Wed Feb 20 2008 - 16:22:16 CST)
- Re: AMBER: NAB to calcuate entropy. . David A. Case (Wed Feb 20 2008 - 17:16:14 CST)
- Re: AMBER: NAB to calcuate entropy. . David A. Case (Wed Feb 20 2008 - 17:18:32 CST)
- RE: AMBER: NAB to calcuate entropy. . Wang, Xuelin (Wed Feb 20 2008 - 18:14:01 CST)
- AMBER: XLEaP Anamika Awasthi (Thu Feb 21 2008 - 03:36:20 CST)
- Re: AMBER: XLEaP David A. Case (Thu Feb 21 2008 - 10:45:08 CST)
- Re: AMBER: NAB to calcuate entropy. . David A. Case (Thu Feb 21 2008 - 11:10:36 CST)
- Re: AMBER: NAB to calcuate entropy. . David A. Case (Thu Feb 21 2008 - 11:10:16 CST)
- AMBER: simulated annealing Holly Freedman (Thu Feb 21 2008 - 13:31:48 CST)
- RE: AMBER: NAB to calcuate entropy. . Wang, Xuelin (Thu Feb 21 2008 - 14:00:31 CST)
- Re: AMBER: simulated annealing David A. Case (Thu Feb 21 2008 - 14:04:26 CST)
- Re: AMBER: NAB to calcuate entropy. . David A. Case (Thu Feb 21 2008 - 14:26:06 CST)
- Re: AMBER: simulated annealing Holly Freedman (Thu Feb 21 2008 - 14:52:42 CST)
- AMBER: Question: tweaking topology files to add SHAKE-constrained bonds David Cerutti (Thu Feb 21 2008 - 23:37:28 CST)
- AMBER: (no subject) Syed Tarique Moin (Fri Feb 22 2008 - 00:10:36 CST)
- Re: AMBER: (no subject) Eddie Mende (Fri Feb 22 2008 - 00:31:01 CST)
- Re: AMBER: (no subject) Eddie Mende (Fri Feb 22 2008 - 00:33:07 CST)
- AMBER: problem bull linux compiling Yannick Monclin (Fri Feb 22 2008 - 05:22:49 CST)
- Re: AMBER: problem bull linux compiling Gustavo Seabra (Fri Feb 22 2008 - 09:56:25 CST)
- RE: AMBER: (no subject) Ibrahim Moustafa (Fri Feb 22 2008 - 10:29:59 CST)
- Re: AMBER: Question: tweaking topology files to add SHAKE-constrained bonds David A. Case (Fri Feb 22 2008 - 11:14:59 CST)
- AMBER: gaff paramters servaas michielssens (Fri Feb 22 2008 - 11:38:53 CST)
- Re: AMBER: gaff paramters Servaas Michielssens (Fri Feb 22 2008 - 15:15:23 CST)
- AMBER: More on tweaking a topology file David Cerutti (Fri Feb 22 2008 - 21:15:40 CST)
- Re: AMBER: gaff paramters Servaas Michielssens (Sat Feb 23 2008 - 01:06:54 CST)
- Re: AMBER: Problem with "trajout pdb" Yi-Ming Cheng (Sat Feb 23 2008 - 03:36:24 CST)
- Re: AMBER: Problem with "trajout pdb" Yi-Ming Cheng (Sat Feb 23 2008 - 04:15:29 CST)
- Fwd: Re: AMBER: Problem with "trajout pdb" Yi-Ming Cheng (Sat Feb 23 2008 - 04:21:29 CST)
- AMBER: dihedral energy in amber aneesh cna (Sat Feb 23 2008 - 04:32:08 CST)
- Re: AMBER: More on tweaking a topology file Carlos Simmerling (Sat Feb 23 2008 - 06:08:30 CST)
- Re: AMBER: dihedral energy in amber David A. Case (Sat Feb 23 2008 - 10:37:09 CST)
- Re: AMBER: problem bull linux compiling Yannick Monclin (Mon Feb 25 2008 - 07:16:06 CST)
- Re: AMBER: parameters for silicon atom Scott Brozell (Mon Feb 25 2008 - 20:24:03 CST)
- AMBER: compiling PMEMD with MKL10.0 Alessandro Nascimento (Tue Feb 26 2008 - 04:20:47 CST)
- Re: AMBER: compiling PMEMD with MKL10.0 Francesco Pietra (Tue Feb 26 2008 - 05:00:32 CST)
- Re: AMBER: compiling PMEMD with MKL10.0 Alessandro Nascimento (Tue Feb 26 2008 - 05:36:40 CST)
- Re: AMBER: compiling PMEMD with MKL10.0 Robert Duke (Tue Feb 26 2008 - 07:22:04 CST)
- AMBER: Force fields oguz gurbulak (Tue Feb 26 2008 - 10:12:48 CST)
- AMBER: bond breaking in proteins Eddie Mende (Tue Feb 26 2008 - 10:16:21 CST)
- AMBER: mol2 save snoze pa (Tue Feb 26 2008 - 11:09:18 CST)
- Re: AMBER: mol2 save Steven Winfield (Tue Feb 26 2008 - 11:13:23 CST)
- Re: AMBER: bond breaking in proteins David A. Case (Tue Feb 26 2008 - 11:16:46 CST)
- Re: AMBER: problem bull linux compiling Gustavo Seabra (Tue Feb 26 2008 - 11:18:27 CST)
- Re: AMBER: Force fields David A. Case (Tue Feb 26 2008 - 11:31:19 CST)
- Re: AMBER: mol2 save FyD (Tue Feb 26 2008 - 11:38:40 CST)
- Re: AMBER: mol2 save David A. Case (Tue Feb 26 2008 - 11:51:19 CST)
- AMBER: autodock pdb to obtain parm with tleap Henar Martínez (Tue Feb 26 2008 - 11:23:43 CST)
- Re: AMBER: compiling PMEMD with MKL10.0 Gustavo Seabra (Tue Feb 26 2008 - 13:46:24 CST)
- Re: AMBER: bond breaking in proteins Gustavo Seabra (Tue Feb 26 2008 - 13:58:22 CST)
- Re: AMBER: autodock pdb to obtain parm with tleap David A. Case (Tue Feb 26 2008 - 15:34:07 CST)
- AMBER: bond breaking in proteins Eddie Mende (Tue Feb 26 2008 - 16:41:22 CST)
- AMBER: Using restart files Lili Peng (Tue Feb 26 2008 - 17:36:50 CST)
- AMBER: bond breaking in proteins Eddie Mende (Tue Feb 26 2008 - 17:40:03 CST)
- Re: AMBER: Using restart files David A. Case (Tue Feb 26 2008 - 18:45:34 CST)
- Re: AMBER: bond breaking in proteins David A. Case (Tue Feb 26 2008 - 18:41:26 CST)
- AMBER: charge derivation for modified amino acids Denzil Bernard (Tue Feb 26 2008 - 19:14:44 CST)
- AMBER: "Assuming uniform neutralizing plasma" Evan Kelly (Tue Feb 26 2008 - 20:01:52 CST)
- Re: AMBER: "Assuming uniform neutralizing plasma" Thomas Cheatham (Tue Feb 26 2008 - 21:31:39 CST)
- Re: AMBER: charge derivation for modified amino acids FyD (Wed Feb 27 2008 - 00:35:10 CST)
- AMBER: stops writing trajectory Swarup Gupta (Wed Feb 27 2008 - 03:55:10 CST)
- Re: AMBER: autodock pdb to obtain parm with tleap Henar Martínez (Wed Feb 27 2008 - 04:58:09 CST)
- Re: AMBER: autodock pdb to obtain parm with tleap Henar Martínez (Wed Feb 27 2008 - 05:14:58 CST)
- AMBER: initial command? Anamika Awasthi (Wed Feb 27 2008 - 06:01:51 CST)
- Re: AMBER: initial command? Carlos Simmerling (Wed Feb 27 2008 - 06:10:01 CST)
- Re: AMBER: bond breaking in proteins Gustavo Seabra (Wed Feb 27 2008 - 10:09:58 CST)
- Re: AMBER: autodock pdb to obtain parm with tleap Junmei Wang (Wed Feb 27 2008 - 11:42:52 CST)
- Re: AMBER: autodock pdb to obtain parm with tleap Francesco Pietra (Wed Feb 27 2008 - 12:14:56 CST)
- AMBER: Amber: shared memory vs cluster Francesco Pietra (Wed Feb 27 2008 - 12:08:19 CST)
- Re: AMBER: autodock pdb to obtain parm with tleap David A. Case (Wed Feb 27 2008 - 12:25:02 CST)
- Re: AMBER: autodock pdb to obtain parm with tleap Henar Martínez (Wed Feb 27 2008 - 12:28:13 CST)
- Re: AMBER: autodock pdb to obtain parm with tleap Henar Martínez (Wed Feb 27 2008 - 12:30:33 CST)
- AMBER: Lennard-Jones parameters zhan chen (Thu Feb 28 2008 - 01:41:02 CST)
- Re: AMBER: bond breaking in proteins Eddie Mende (Tue Feb 26 2008 - 14:49:04 CST)
- Re: AMBER: Amber: shared memory vs cluster Robert Duke (Wed Feb 27 2008 - 12:37:31 CST)
- Re: AMBER: bond breaking in proteins Eddie Mende (Tue Feb 26 2008 - 15:04:02 CST)
- Re: AMBER: bond breaking in proteins Eddie Mende (Tue Feb 26 2008 - 16:55:20 CST)
- RE: AMBER: initial command? Steve Spronk (Wed Feb 27 2008 - 12:45:43 CST)
- RE: AMBER: initial command? Bill Ross (Wed Feb 27 2008 - 12:56:20 CST)
- AMBER: DFTB/SCC-DFTB Eddie Mende (Wed Feb 27 2008 - 13:21:42 CST)
- AMBER: varying restraint_wt with nmropt=1 Andrew Borgert (Wed Feb 27 2008 - 14:18:28 CST)
- Re: AMBER: Amber: shared memory vs cluster Francesco Pietra (Wed Feb 27 2008 - 15:00:32 CST)
- Re: AMBER: Amber: shared memory vs cluster Robert Duke (Wed Feb 27 2008 - 15:20:56 CST)
- Re: AMBER: Lennard-Jones parameters Klenner_at_bioinformatik.uni-frankfurt.de (Wed Feb 27 2008 - 16:11:50 CST)
- Re: AMBER: Lennard-Jones parameters David A. Case (Wed Feb 27 2008 - 16:16:34 CST)
- Re: AMBER: Lennard-Jones parameters Bill Ross (Wed Feb 27 2008 - 18:09:10 CST)
- AMBER: change in secondary structure during MD Ibrahim Moustafa (Wed Feb 27 2008 - 19:45:21 CST)
- RE: AMBER: change in secondary structure during MD Yong Duan (Wed Feb 27 2008 - 20:13:11 CST)
- Re: AMBER: Lennard-Jones parameters Zhan Chen (Wed Feb 27 2008 - 20:59:26 CST)
- AMBER: problem with antechamber aneesh cna (Wed Feb 27 2008 - 23:55:53 CST)
- Re: AMBER: DFTB/SCC-DFTB David A. Case (Thu Feb 28 2008 - 00:15:48 CST)
- Re: AMBER: varying restraint_wt with nmropt=1 Daniel Cappel (Thu Feb 28 2008 - 01:50:02 CST)
- Re: AMBER: change in secondary structure during MD Carlos Simmerling (Thu Feb 28 2008 - 06:15:58 CST)
- AMBER: problems with Replica Exchange rebeca_at_mmb.pcb.ub.es (Thu Feb 28 2008 - 06:29:23 CST)
- Re: AMBER: problems with Replica Exchange Carlos Simmerling (Thu Feb 28 2008 - 06:46:57 CST)
- AMBER: Plea for REMD tutorial tushar garud (Thu Feb 28 2008 - 07:56:42 CST)
- Re: AMBER: Plea for REMD tutorial Carlos Simmerling (Thu Feb 28 2008 - 08:08:26 CST)
- AMBER: Molecular dynamics simulation of large-scale domainmovement in a protein Fenghui Fan (Thu Feb 28 2008 - 08:38:23 CST)
- Re: AMBER: problems with Replica Exchange rebeca_at_mmb.pcb.ub.es (Thu Feb 28 2008 - 09:16:27 CST)
- Re: AMBER: problem with antechamber Junmei Wang (Thu Feb 28 2008 - 09:06:31 CST)
- AMBER: Liquid/Gas Phase Rita Cassia (Thu Feb 28 2008 - 10:34:00 CST)
- Re: AMBER: problems with Replica Exchange Carlos Simmerling (Thu Feb 28 2008 - 10:14:14 CST)
- Re: AMBER: Lennard-Jones parameters Bill Ross (Thu Feb 28 2008 - 14:07:31 CST)
- AMBER: problems with 10-12 potential in amber8 sander Amie Demmel (Thu Feb 28 2008 - 14:59:27 CST)
- AMBER: problems with 10-12 potential in amber8 sander Amie Demmel (Thu Feb 28 2008 - 14:59:27 CST)
- AMBER: Re: Force field parameter file for CNT Andrey Semichaevsky (Thu Feb 28 2008 - 15:34:01 CST)
- Re: AMBER: problems with 10-12 potential in amber8 sander David A. Case (Thu Feb 28 2008 - 16:27:47 CST)
- RE: AMBER: change in secondary structure during MD Fenghui Fan (Thu Feb 28 2008 - 16:48:53 CST)
- Re: AMBER: problems with 10-12 potential in amber8 sander Amie Demmel (Thu Feb 28 2008 - 16:53:15 CST)
- Re: AMBER: problems with 10-12 potential in amber8 sander Lynn F. Ten Eyck (Thu Feb 28 2008 - 16:54:47 CST)
- RE: AMBER: change in secondary structure during MD Ibrahim Moustafa (Thu Feb 28 2008 - 16:12:49 CST)
- Re: AMBER: problems with 10-12 potential in amber8 sander David A. Case (Thu Feb 28 2008 - 17:47:10 CST)
- AMBER: for NMR refinement Wenyong Tong (Thu Feb 28 2008 - 20:20:08 CST)
- Re: AMBER: parameters for silicon atom Scott Brozell (Fri Feb 29 2008 - 02:31:03 CST)
- AMBER: Visualizing Periodc box Vijay Manickam Achari (Fri Feb 29 2008 - 01:50:13 CST)
- RE: AMBER: initial command? Steve Spronk (Fri Feb 29 2008 - 08:17:38 CST)
- AMBER: Plea for REMD tutorial tushar garud (Fri Feb 29 2008 - 08:57:41 CST)
- AMBER: Re: Amber Force field for CNT: leaprc.ff23 Andrey Semichaevsky (Fri Feb 29 2008 - 09:35:16 CST)
- Re: AMBER: Re: Force field parameter file for CNT David A. Case (Fri Feb 29 2008 - 10:19:47 CST)
- Re: AMBER: problems with 10-12 potential in amber8 sander Amie Demmel (Fri Feb 29 2008 - 10:23:15 CST)
- Re: AMBER: Re: Force field parameter file for CNT Andrey Semichaevsky (Fri Feb 29 2008 - 10:38:39 CST)
- Re: AMBER: Plea for REMD tutorial Carlos Simmerling (Fri Feb 29 2008 - 11:47:47 CST)
- Re: AMBER: problems with Replica Exchange Carlos Simmerling (Fri Feb 29 2008 - 12:33:59 CST)
- Re: AMBER: for NMR refinement David A. Case (Fri Feb 29 2008 - 12:53:59 CST)
- AMBER: Non aqueous implicit solvation Mike Wykes (Fri Feb 29 2008 - 12:56:01 CST)
Last message date: Wed Dec 31 2008 - 22:47:27 CST
Archived on: Thu Jan 08 2009 - 16:01:47 CST
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