AMBER Archive (2008)Subject: Re: AMBER: Entropy calculations using NMODE
From: Eddie Mende (pckboy_at_gmail.com)
Date: Sat Feb 02 2008 - 07:17:06 CST
Gut feeling tells me:
T > 0
delta S > 0
and there you go!
Sign must be positive or equal zero :)
But I wish I could see the output of your AMBER job
Regards
Edu
Graduate minion
saurabh agrawal wrote:
> Dear Amber Users,
>
> I have done Nmode calculations and found TSTOT values. But I am not
> able to understand the value I got through TSTOT is (-T deltaS) or (T
> deltaS) . In some previous references authors have used DeltaG (of
> binding) = Delta H - (TSTOT) and in some references it is DeltaG (of
> binding) = Delta H - (-TSTOT).
>
> Kindly reply me in this regard.
>
> Thanking you in advance.
>
> saurabh
>
>
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