AMBER Archive (2008)

Subject: Re: AMBER: sander error on Make test.serial

From: David A. Case (
Date: Wed Feb 13 2008 - 23:57:32 CST

On Wed, Feb 13, 2008, Evan Kelly wrote:
> I am recompiling the serial version of Amber after a system upgrade
> (Athlon system using ifort_ia32 config option and MKL). The compile
> was successful, but, the the test suite gives the following fatal error:
> ==============================================================
> cd rdc; ./Run.dip
> ../../exe/sander: symbol lookup error: ../../exe/sander: undefined
> symbol: _MKL_SERV_lsame

Did the system upgrade change the mkl version or something? Did you recompile
after the upgrade?

Is the "rdc" test the only one that gives this error?

My first suggestion is to compile without MKL -- for most things, you probably
won't really notice much of a performance hit.

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