AMBER Archive (2008)

Subject: Re: AMBER: parameters for silicon atom

From: Scott Brozell (
Date: Mon Feb 25 2008 - 20:24:03 CST


Have there been any developments for silicon parameters ?
The context is docking studies of ligands with silicon as a
cogener of carbon.


On Mon, 20 Nov 2006, Chengwen Chen wrote:

> I am interested in a MD study of small molecules (silicon atom
> contained) bound to DNA duplex, parm99 was used. But there are no parameters
> for silicon atom in pam99 force field. Where can I get those parameters? Or
> any other suggesions?

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