AMBER Archive (2008)

Subject: RE: AMBER: (no subject)

From: Syed Tarique Moin (tarisyed_at_yahoo.com)
Date: Wed Feb 13 2008 - 22:58:56 CST

Hi Ross,

Thanks ! After some time, i found the mistake that i
made.

Thanks and Regards

--- Ross Walker <ross_at_rosswalker.co.uk> wrote:

> Hi Syed,
>
> We'd need to see much more details of what you did
> to be able to help
> properly. The original input files you used, the
> command lines you issued
> and the resulting prep file is really the minimum
> we'd need.
>
> All the best
> Ross
>
> /\
> \/
> |\oss Walker
>
> | Assistant Research Professor |
> | San Diego Supercomputer Center |
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> _____
>
> From: owner-amber_at_scripps.edu
> [mailto:owner-amber_at_scripps.edu] On Behalf Of
> Syed Tarique Moin
> Sent: Wednesday, February 13, 2008 02:55
> To: Amber
> Subject: AMBER: (no subject)
>
>
> Dear all,
>
> I am dealing with a protein that is oxygenated one,
> contain peroxide ion,
> Using antechamber to prepare prepin file, Prepin
> file has been prepared but
> in the prepin file it contain an atom named X. When
> i try to make frcmod
> file from this prepin file, It gives an error,
> unrecognized atom name X.
>
> Kindly give me suggestions.
> Thanks in advance
> Regards
>
>
>
> _____
>
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>
>

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