AMBER Archive (2008)

Subject: Re: AMBER: Regarding:PME and neturalization

From: Lars Skjærven (
Date: Wed Feb 20 2008 - 02:39:59 CST

I think this thread will help you understand more about this:

Yes, you should use PME.

Good luck :-)


On Feb 20, 2008 6:12 AM, jani sahil <> wrote:
> Dear All,
> I am stuck in a problem since long and i tired various way
> Can any one can guide me. That if I use PME than can I simulate
> Charged protein?
> Is their any other protocol should be follow prior to use of PME for charged
> protein
> Regards
> Jani Vinod

mvh Lars Skjærven
Institutt for Biomedisin
Universitetet i Bergen
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