AMBER Archive (2008)

Subject: AMBER: Force fields

From: oguz gurbulak (gurbulakoguz_at_yahoo.com)
Date: Tue Feb 26 2008 - 10:12:48 CST

  Hi Dear AMBER developers,
   
  My name is oguz gurbulak. I study on Molecular dynamics ( MD ). I’m interested in alkanes. I’m new to AMBER and still learning how to use the AMBER. A number of different force fields are supplied with AMBER. Is it possible to change and modify these force fields? If it’s possible how can it be done? In fact, I decided to use TraPPE-UA force field ( transferable force-field model ) and an all-atom force field. So Could you give me some information and also some tips about using these two force fields in AMBER?
   
  Thank you very much for your attention.
   
  Yours sincerely
   

       
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