AMBER Archive (2008)

Subject: RE: AMBER: (no subject)

From: Ibrahim Moustafa (I.moustafa_at_psu.edu)
Date: Fri Feb 22 2008 - 10:29:59 CST

Hi syed,

 

  You can use chimera program to check for any clash in your initial
structure and do the manual adjustment if needed.

Once you get a reasonable initial geometry you can carry on your simulation.

 

Good luck,

  Ibrahim

 

From: owner-amber_at_scripps.edu [mailto:owner-amber_at_scripps.edu] On Behalf Of
Syed Tarique Moin
Sent: Friday, February 22, 2008 1:11 AM
To: amber_at_scripps.edu
Subject: AMBER: (no subject)

 

Hello,

 

I am trying to minimize a complex, but i was stuck by the linmin error. I am
attaching output file of minimization.

 

Thanks in advance

 

Regards

  

  _____

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