AMBER Archive (2008)

Subject: Re: AMBER: autodock pdb to obtain parm with tleap

From: David A. Case (
Date: Tue Feb 26 2008 - 15:34:07 CST

On Tue, Feb 26, 2008, Henar Martínez wrote:

> Anybody know how to transform an autodock pdb file in a pdb one that
> tleap can use to generate the parm file.
> The problem is: tleap does not recognize the atom types of the autodock
> pdb file.

We would need to see at least a little bit of the file to know what you are
talking about. PDB files do not store atom type information, so it's hard
to know what the real problem is.


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