AMBER Archive (2009) - Aug 2009 By Date

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Starting: Sat Aug 01 2009 - 00:33:58 CDT
Ending: Mon Aug 31 2009 - 23:48:39 CDT

[AMBER] radial distribution function Dharmik Meghana shankar (Sat Aug 01 2009 - 00:33:58 CDT)
[AMBER] Timescales and restraints for protein-small ligands movement simulations Andrew Voronkov (Sat Aug 01 2009 - 01:23:19 CDT)
Re: [AMBER] problem from xleap Tom Joseph (Sat Aug 01 2009 - 06:19:22 CDT)
[AMBER] Re: query bharat lakhani (Sat Aug 01 2009 - 07:07:24 CDT)
Re: [AMBER] Re: query Ashish Runthala (Sat Aug 01 2009 - 07:21:47 CDT)
[AMBER] Showing error bharat lakhani (Sat Aug 01 2009 - 08:12:00 CDT)
Re: [AMBER] Timescales and restraints for protein-small ligands movement simulations Andrew Voronkov (Sat Aug 01 2009 - 09:14:49 CDT)
[AMBER] Showing error in energy minimization bharat lakhani (Sun Aug 02 2009 - 01:22:30 CDT)
Re: [AMBER] Timescales and restraints for protein-small ligands movement simulations Vivek Sharma (Sun Aug 02 2009 - 01:29:13 CDT)
Re: [AMBER] Showing error in energy minimization case (Sun Aug 02 2009 - 09:25:04 CDT)
Re: [AMBER] Showing error in energy minimization Ashish Runthala (Sun Aug 02 2009 - 22:05:06 CDT)
[AMBER] Do we need to need to rms fit all atoms before calculating correlation motion between residues? Catein Catherine (Sun Aug 02 2009 - 22:45:19 CDT)
RE: [AMBER] PCA analysis: the first vector is the movement of whole molecule. Catein Catherine (Sun Aug 02 2009 - 22:47:07 CDT)
Re: [AMBER] xleap installation error Bokun Cho (Mon Aug 03 2009 - 00:18:00 CDT)
[AMBER] showing error when creating topology and coordinate file bharat lakhani (Mon Aug 03 2009 - 02:19:59 CDT)
[AMBER] optimization step length ondrej.prenosil_at_marge.uochb.cas.cz (Mon Aug 03 2009 - 05:40:15 CDT)
[AMBER] Problem with Amber8 Sebastian Petruczynik (Mon Aug 03 2009 - 08:28:56 CDT)
Re: [AMBER] Problem with Amber8 ondrej.prenosil_at_marge.uochb.cas.cz (Mon Aug 03 2009 - 08:37:01 CDT)
Re: [AMBER] optimization step length Ashish Runthala (Mon Aug 03 2009 - 09:26:28 CDT)
[AMBER] What is the meaning of IED values for PCA analysis? Catein Catherine (Mon Aug 03 2009 - 09:30:15 CDT)
[AMBER] How to solve the problem "RESTARTED DUE to LINMIN FAILURE" Jianping Lin (Mon Aug 03 2009 - 09:57:28 CDT)
Re: [AMBER] nonbon.f question Rizwan Tai (Mon Aug 03 2009 - 11:13:21 CDT)
Re: [AMBER] xleap installation error Scott Brozell (Mon Aug 03 2009 - 11:57:18 CDT)
[AMBER] Lennard Jones potential Rizwan Tai (Mon Aug 03 2009 - 12:13:16 CDT)
RE: [AMBER] nonbon.f question Ross Walker (Mon Aug 03 2009 - 13:32:18 CDT)
RE: [AMBER] Lennard Jones potential Ross Walker (Mon Aug 03 2009 - 14:28:06 CDT)
RE: [AMBER] How to solve the problem "RESTARTED DUE to LINMIN FAILURE" Ross Walker (Mon Aug 03 2009 - 14:38:23 CDT)
RE: [AMBER] Problem with Amber8 Ross Walker (Mon Aug 03 2009 - 14:41:28 CDT)
[AMBER] Re: showing error when creating topology and coordinate file bharat lakhani (Mon Aug 03 2009 - 23:54:36 CDT)
RE: [AMBER] Re: showing error when creating topology and coordinate file Olotu Odunayo (Tue Aug 04 2009 - 08:08:32 CDT)
[AMBER] parmchk problem isaac sugden (Tue Aug 04 2009 - 09:12:29 CDT)
[AMBER] Protein Activity Chih-Ying Lin (Tue Aug 04 2009 - 12:57:54 CDT)
Re: [AMBER] Protein Activity Bill Ross (Tue Aug 04 2009 - 14:19:32 CDT)
Re: [AMBER] Protein Activity Chih-Ying Lin (Tue Aug 04 2009 - 14:42:42 CDT)
Re: [AMBER] Protein Activity Bill Ross (Tue Aug 04 2009 - 14:59:40 CDT)
Re: [AMBER] Protein Activity Ashish Runthala (Tue Aug 04 2009 - 22:42:11 CDT)
[AMBER] problem of mm_pbsa Qinghua Liao (Wed Aug 05 2009 - 00:46:51 CDT)
[AMBER] USE A VERSION COMPILED WITHOUT -DLES s. Bill (Wed Aug 05 2009 - 05:50:01 CDT)
Re: [AMBER] Problem with Amber8 Sebastian Petruczynik (Wed Aug 05 2009 - 06:33:05 CDT)
[AMBER] TWO restraints with different force constants s. Bill (Wed Aug 05 2009 - 06:54:18 CDT)
Solved THNAKS Re: [AMBER] USE A VERSION COMPILED WITHOUT -DLES s. Bill (Wed Aug 05 2009 - 06:55:55 CDT)
Re: [AMBER] TWO restraints with different force constants A. Gomez-Sicilia (Wed Aug 05 2009 - 07:20:54 CDT)
AW: [AMBER] TWO restraints with different force constants Aust, Susanne (Wed Aug 05 2009 - 07:31:38 CDT)
[AMBER] Computational Resources s. Bill (Wed Aug 05 2009 - 10:17:34 CDT)
Re: [AMBER] problem of mm_pbsa case (Wed Aug 05 2009 - 10:42:56 CDT)
RE: [AMBER] Computational Resources Ross Walker (Wed Aug 05 2009 - 11:08:21 CDT)
Re: [AMBER] parmchk problem case (Wed Aug 05 2009 - 11:36:27 CDT)
Re: [AMBER] What is the meaning of IED values for PCA analysis? case (Wed Aug 05 2009 - 11:39:30 CDT)
[AMBER] ptraj failure to parse psf input Sasha Buzko (Wed Aug 05 2009 - 11:39:57 CDT)
Re: [AMBER] parmchk problem isaac sugden (Wed Aug 05 2009 - 12:21:53 CDT)
Re: [AMBER] ptraj failure to parse psf input case (Wed Aug 05 2009 - 12:32:00 CDT)
Re: [AMBER] ptraj failure to parse psf input Sasha Buzko (Wed Aug 05 2009 - 14:33:54 CDT)
[AMBER] nmode output Vahdati N. (Wed Aug 05 2009 - 17:26:11 CDT)
Re: [AMBER] problem of mm_pbsa Qinghua Liao (Wed Aug 05 2009 - 19:22:13 CDT)
[AMBER] implicit solvent simulation Manish Kumar (Wed Aug 05 2009 - 23:49:30 CDT)
Re: [AMBER] implicit solvent simulation Ashish Runthala (Thu Aug 06 2009 - 00:00:50 CDT)
Re: [AMBER] implicit solvent simulation Manish Kumar (Thu Aug 06 2009 - 00:19:11 CDT)
RE: [AMBER] implicit solvent simulation Ross Walker (Thu Aug 06 2009 - 01:32:24 CDT)
Re: [AMBER] implicit solvent simulation Manish Kumar (Thu Aug 06 2009 - 01:53:54 CDT)
[AMBER] Model(l)ing'09 in Erlangen, Germany: Registration Open Until August 31st Harald Lanig (Thu Aug 06 2009 - 03:39:07 CDT)
[AMBER] Extreme optimization problems ondrej.prenosil_at_marge.uochb.cas.cz (Thu Aug 06 2009 - 07:04:09 CDT)
[AMBER] parameters for HIV protease inhibitors Oliver Kuhn (Thu Aug 06 2009 - 09:51:03 CDT)
Re: [AMBER] parameters for HIV protease inhibitors Carlos Simmerling (Thu Aug 06 2009 - 10:29:39 CDT)
Re: [AMBER] Extreme optimization problems case (Thu Aug 06 2009 - 10:51:23 CDT)
Re: [AMBER] problem of mm_pbsa Rubben Torella (Thu Aug 06 2009 - 10:53:47 CDT)
[AMBER] Regd : gaff force field KIRTANA S (Thu Aug 06 2009 - 15:09:14 CDT)
Re: [AMBER] Regd : gaff force field Nicholas Musolino (Thu Aug 06 2009 - 15:22:37 CDT)
RE: [AMBER] Regd : gaff force field Ross Walker (Thu Aug 06 2009 - 15:42:14 CDT)
Re: [AMBER] Regd : gaff force field KIRTANA S (Thu Aug 06 2009 - 17:12:15 CDT)
Re: [AMBER] problem of mm_pbsa Qinghua Liao (Thu Aug 06 2009 - 18:58:55 CDT)
[AMBER] How to keep the closest solvent mols to each atoms by PTRAJ? u8613020_at_msg.ndhu.edu.tw (Thu Aug 06 2009 - 20:40:17 CDT)
[AMBER] implicit solvent simulation with new ligand Manish Kumar (Thu Aug 06 2009 - 22:29:37 CDT)
Re: [AMBER] Regd : gaff force field Ashish Runthala (Fri Aug 07 2009 - 04:08:43 CDT)
[AMBER] query bharat lakhani (Fri Aug 07 2009 - 04:11:42 CDT)
[AMBER] pmemd michael (Fri Aug 07 2009 - 04:50:29 CDT)
[AMBER] query regarding resp subarna thakur (Fri Aug 07 2009 - 07:14:35 CDT)
[AMBER] (no subject) Beale, John (Fri Aug 07 2009 - 07:16:58 CDT)
Re: [AMBER] (no subject) Ashish Runthala (Fri Aug 07 2009 - 08:27:04 CDT)
[AMBER] MM-PBSA results Dmitry Osolodkin (Fri Aug 07 2009 - 09:31:48 CDT)
Re: [AMBER] pmemd case (Fri Aug 07 2009 - 10:18:52 CDT)
RE: [AMBER] (no subject) Ross Walker (Fri Aug 07 2009 - 10:35:32 CDT)
RE: [AMBER] Regd : gaff force field Ross Walker (Fri Aug 07 2009 - 10:52:07 CDT)
[AMBER] Appropriate nmode input file for gas and vacuum phase simulation Scott Pendley (Fri Aug 07 2009 - 12:48:52 CDT)
[AMBER] antechamber am1-bcc issues David Mobley (Fri Aug 07 2009 - 13:19:53 CDT)
[AMBER] Re: implicit solvent simulation with new ligand Manish Kumar (Fri Aug 07 2009 - 13:22:57 CDT)
Re: [AMBER] Re: implicit solvent simulation with new ligand Carlos Simmerling (Fri Aug 07 2009 - 13:29:46 CDT)
[AMBER] Parameters for haloacetates Joseph Nachman (Fri Aug 07 2009 - 13:22:34 CDT)
Re: [AMBER] Re: implicit solvent simulation with new ligand Manish Kumar (Fri Aug 07 2009 - 14:08:59 CDT)
Re: [AMBER] How to solve the problem "RESTARTED DUE to LINMIN FAILURE" Jianping Lin (Fri Aug 07 2009 - 15:32:47 CDT)
[AMBER] Error in equilibration: file _ew_box.f Biswaranjan Meher (Fri Aug 07 2009 - 15:39:00 CDT)
Re: [AMBER] Error in equilibration: file _ew_box.f case (Fri Aug 07 2009 - 17:34:29 CDT)
Re: [AMBER] problem of mm_pbsa Jordan Monnet (Fri Aug 07 2009 - 18:13:57 CDT)
Re: [AMBER] (no subject) case (Fri Aug 07 2009 - 18:54:18 CDT)
[AMBER] Re: antechamber am1-bcc issues case (Fri Aug 07 2009 - 18:54:38 CDT)
Re: [AMBER] problem of mm_pbsa Qinghua Liao (Fri Aug 07 2009 - 20:11:43 CDT)
Re: [AMBER] Parameters for haloacetates Lili Peng (Fri Aug 07 2009 - 23:43:50 CDT)
[AMBER] Why..QM/MM s. Bill (Sat Aug 08 2009 - 06:26:46 CDT)
Re: [AMBER] Regd : gaff force field Ashish Runthala (Sat Aug 08 2009 - 07:17:37 CDT)
Re: [AMBER] Re: antechamber am1-bcc issues gilbert_at_bluemarble.net (Sat Aug 08 2009 - 08:55:40 CDT)
RE: [AMBER] Why..QM/MM Ross Walker (Sat Aug 08 2009 - 12:00:27 CDT)
Re: [AMBER] Re: antechamber am1-bcc issues case (Sat Aug 08 2009 - 14:20:44 CDT)
[AMBER] hydrogen bond? Jio M (Sun Aug 09 2009 - 06:29:23 CDT)
[AMBER] Regarding Minimization maxcyc Ashish Runthala (Sun Aug 09 2009 - 09:09:58 CDT)
[AMBER] DivCon - QM/MM s. Bill (Mon Aug 10 2009 - 09:11:39 CDT)
Re: [AMBER] Regarding Minimization maxcyc case (Mon Aug 10 2009 - 09:43:00 CDT)
Re: [AMBER] Re: implicit solvent simulation with new ligand Carlos Simmerling (Mon Aug 10 2009 - 09:42:33 CDT)
Re: [AMBER] Parameters for haloacetates Joseph Nachman (Mon Aug 10 2009 - 09:54:13 CDT)
Re: [AMBER] problem of mm_pbsa Jordan Monnet (Mon Aug 10 2009 - 14:37:55 CDT)
Re: [AMBER] pmemd michael (Mon Aug 10 2009 - 14:51:59 CDT)
[AMBER] Re: How to solve the problem "RESTARTED DUE to LINMIN FAILURE" Jianping Lin (Mon Aug 10 2009 - 18:18:44 CDT)
RE: [AMBER] pmemd Ross Walker (Mon Aug 10 2009 - 19:00:12 CDT)
Re: [AMBER] Re: How to solve the problem "RESTARTED DUE to LINMIN FAILURE" Bill Ross (Mon Aug 10 2009 - 20:17:05 CDT)
Re: [AMBER] Re: How to solve the problem "RESTARTED DUE to LINMIN FAILURE" Jianping Lin (Mon Aug 10 2009 - 20:23:44 CDT)
Re: [AMBER] Re: How to solve the problem "RESTARTED DUE to LINMIN FAILURE" Bill Ross (Mon Aug 10 2009 - 20:30:07 CDT)
Solved thanks Re: [AMBER] DivCon - QM/MM s. Bill (Tue Aug 11 2009 - 02:54:38 CDT)
[AMBER] Any Comment, please s. Bill (Tue Aug 11 2009 - 02:56:20 CDT)
AW: [AMBER] Any Comment, please Aust, Susanne (Tue Aug 11 2009 - 03:17:18 CDT)
Re: AW: [AMBER] Any Comment, please s. Bill (Tue Aug 11 2009 - 03:22:16 CDT)
AW: AW: [AMBER] Any Comment, please Aust, Susanne (Tue Aug 11 2009 - 03:36:34 CDT)
[AMBER] MM-GBSA nmode error for explicit solvent system only but not for implicit solvent system. Why? Catein Catherine (Tue Aug 11 2009 - 06:10:09 CDT)
Re: [AMBER] MM-GBSA nmode error for explicit solvent system only but not for implicit solvent system. Why? case (Tue Aug 11 2009 - 06:54:43 CDT)
Re: [AMBER] parmchk problem case (Tue Aug 11 2009 - 08:51:57 CDT)
Re: [AMBER] query regarding resp Oliver Kuhn (Tue Aug 11 2009 - 09:24:19 CDT)
[AMBER] Amber99SB eric johnson (Tue Aug 11 2009 - 09:33:34 CDT)
Re: [AMBER] Amber99SB Carlos Simmerling (Tue Aug 11 2009 - 09:42:44 CDT)
Re: [AMBER] parameters for HIV protease inhibitors Oliver Kuhn (Tue Aug 11 2009 - 09:57:24 CDT)
[AMBER] suggestions pls Jio M (Tue Aug 11 2009 - 12:44:19 CDT)
[AMBER] measuring volume of the binding pocket Mannan (Tue Aug 11 2009 - 21:03:49 CDT)
Re: [AMBER] suggestions pls Ashish Runthala (Tue Aug 11 2009 - 21:40:40 CDT)
[AMBER] Measuring volume of the binding pocket Mannan (Tue Aug 11 2009 - 21:31:18 CDT)
[AMBER] query regarding fes cluster subarna thakur (Wed Aug 12 2009 - 00:39:55 CDT)
Re: [AMBER] parameters for HIV protease inhibitors FyD (Wed Aug 12 2009 - 07:56:18 CDT)
Re: [AMBER] query regarding fes cluster FyD (Wed Aug 12 2009 - 08:00:37 CDT)
Re: [AMBER] suggestions pls Jio M (Wed Aug 12 2009 - 08:04:16 CDT)
[AMBER] gaussian 98 input/output for antechamber/resp wong105_at_llnl.gov (Wed Aug 12 2009 - 13:41:45 CDT)
[AMBER] REMD using hybrid solvent model Morad Mustafa (Wed Aug 12 2009 - 14:05:40 CDT)
[AMBER] CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS FULL PDB Manish Kumar (Wed Aug 12 2009 - 14:44:37 CDT)
Re: [AMBER] CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS FULL PDB case (Wed Aug 12 2009 - 14:57:33 CDT)
Re: [AMBER] CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS FULL PDB Hector A. Baldoni (Wed Aug 12 2009 - 15:43:28 CDT)
Re: [AMBER] ptraj failure to parse psf input Sasha Buzko (Wed Aug 12 2009 - 16:16:07 CDT)
[Amber]: REMD using hybrid solvent model Morad Mustafa (Wed Aug 12 2009 - 16:30:01 CDT)
Re: [Amber]: REMD using hybrid solvent model Carlos Simmerling (Wed Aug 12 2009 - 18:52:56 CDT)
Re: [Amber]: REMD using hybrid solvent model Carlos Simmerling (Wed Aug 12 2009 - 18:54:20 CDT)
[AMBER] sourcing leap commands in log file Donald Keidel (Wed Aug 12 2009 - 19:32:31 CDT)
Re: [AMBER] sourcing leap commands in log file Bill Ross (Wed Aug 12 2009 - 19:47:57 CDT)
[AMBER] reset velocity Parimal Kar (Wed Aug 12 2009 - 20:01:33 CDT)
RE: [AMBER] MM-GBSA nmode error for explicit solvent system only but not for implicit solvent system. Why? Catein Catherine (Wed Aug 12 2009 - 21:23:40 CDT)
Re: [AMBER] ptraj failure to parse psf input Thomas Cheatham (Wed Aug 12 2009 - 23:27:34 CDT)
Re: [AMBER] reset velocity Tom Joseph (Thu Aug 13 2009 - 01:26:48 CDT)
Re: [AMBER] gaussian 98 input/output for antechamber/resp Karl Kirschner (Thu Aug 13 2009 - 01:57:41 CDT)
Re: [AMBER] gaussian 98 input/output for antechamber/resp Karl Kirschner (Thu Aug 13 2009 - 02:26:12 CDT)
[AMBER] ptraj imaging of namd generated trajectories Vlad Cojocaru (Thu Aug 13 2009 - 04:35:49 CDT)
[AMBER] Re: ptraj imaging of namd generated trajectories Vlad Cojocaru (Thu Aug 13 2009 - 05:10:54 CDT)
[AMBER] ptraj-image Nancy (Thu Aug 13 2009 - 05:35:01 CDT)
[AMBER] box problem Nancy (Thu Aug 13 2009 - 06:20:20 CDT)
Re: [AMBER] MM-GBSA nmode error for explicit solvent system only but not for implicit solvent system. Why? case (Thu Aug 13 2009 - 06:46:02 CDT)
Re: [AMBER] box problem case (Thu Aug 13 2009 - 06:50:54 CDT)
Re: [AMBER] Re: antechamber am1-bcc issues David Mobley (Thu Aug 13 2009 - 08:25:52 CDT)
[AMBER] NAB optimization ondrej.prenosil_at_marge.uochb.cas.cz (Thu Aug 13 2009 - 08:45:26 CDT)
[AMBER] drying of solvent possible ? Jio M (Thu Aug 13 2009 - 08:49:00 CDT)
Re: [AMBER] NAB optimization case (Thu Aug 13 2009 - 08:56:28 CDT)
Re: [AMBER] problem of mm_pbsa Qinghua Liao (Thu Aug 13 2009 - 08:58:24 CDT)
[AMBER] Strange QM/MM Divcon - help me out s. Bill (Thu Aug 13 2009 - 10:37:54 CDT)
[AMBER] QM/MM types. ros_at_servidor.unam.mx (Thu Aug 13 2009 - 10:49:02 CDT)
Re: [AMBER] Strange QM/MM Divcon - help me out case (Thu Aug 13 2009 - 10:52:34 CDT)
RE: [AMBER] QM/MM types. Ross Walker (Thu Aug 13 2009 - 11:11:57 CDT)
Re: [AMBER] drying of solvent possible ? Bill Ross (Thu Aug 13 2009 - 11:21:35 CDT)
Re: [AMBER] ptraj failure to parse psf input Sasha Buzko (Thu Aug 13 2009 - 11:25:32 CDT)
[AMBER] Protein Domain Motion Chih-Ying Lin (Thu Aug 13 2009 - 14:20:09 CDT)
Re: [AMBER] Protein Domain Motion Carlos Simmerling (Thu Aug 13 2009 - 14:39:39 CDT)
Re: [AMBER] problem of mm_pbsa Jordan Monnet (Thu Aug 13 2009 - 15:04:37 CDT)
Re: [AMBER] ptraj failure to parse psf input Sasha Buzko (Thu Aug 13 2009 - 18:34:07 CDT)
Re: [AMBER] Protein Domain Motion Chih-Ying Lin (Thu Aug 13 2009 - 20:51:14 CDT)
Re:Re: [AMBER] box problem Nancy (Thu Aug 13 2009 - 21:43:02 CDT)
RE: [AMBER] MM-GBSA nmode error for explicit solvent system only but not for implicit solvent system. Why? Catein Catherine (Thu Aug 13 2009 - 22:38:02 CDT)
[AMBER] Charge Problem s. Bill (Fri Aug 14 2009 - 03:25:05 CDT)
Re: [AMBER] Charge Problem Karl Kirschner (Fri Aug 14 2009 - 03:55:07 CDT)
Re: [AMBER] Protein Domain Motion Carlos Simmerling (Fri Aug 14 2009 - 07:17:28 CDT)
Re: [Amber]: REMD using hybrid solvent model Morad Mustafa (Fri Aug 14 2009 - 07:44:44 CDT)
[AMBER] MM_PBSA not successful workalemahu berhanu (Fri Aug 14 2009 - 16:45:41 CDT)
Re: [AMBER] MM_PBSA not successful Jordan Monnet (Fri Aug 14 2009 - 19:05:00 CDT)
Re: [AMBER] MM_PBSA not successful Qinghua Liao (Fri Aug 14 2009 - 20:20:55 CDT)
Re: [AMBER] MM_PBSA not successful workalemahu berhanu (Fri Aug 14 2009 - 21:21:32 CDT)
Re: [AMBER] MM_PBSA not successful workalemahu berhanu (Fri Aug 14 2009 - 21:36:39 CDT)
Re: [AMBER] MM_PBSA not successful Qinghua Liao (Fri Aug 14 2009 - 21:43:23 CDT)
Re: [AMBER] MM_PBSA not successful workalemahu berhanu (Fri Aug 14 2009 - 23:22:57 CDT)
Re: [AMBER] drying of solvent possible ? Jio M (Sat Aug 15 2009 - 00:59:08 CDT)
Re: [AMBER] MM-GBSA nmode error for explicit solvent system only but not for implicit solvent system. Why? Ashish Runthala (Sat Aug 15 2009 - 01:05:53 CDT)
Re: Re: [AMBER] box problem Ashish Runthala (Sat Aug 15 2009 - 01:12:10 CDT)
Re: [AMBER] Strange QM/MM Divcon - help me out Ashish Runthala (Sat Aug 15 2009 - 01:42:38 CDT)
Re: [AMBER] sourcing leap commands in log file Ashish Runthala (Sat Aug 15 2009 - 01:50:31 CDT)
Re: [AMBER] MM_PBSA not successful Qinghua Liao (Sat Aug 15 2009 - 01:55:40 CDT)
[AMBER] AMBER job restart problem Kefa Lu (Sat Aug 15 2009 - 03:22:08 CDT)
Re: [AMBER] AMBER job restart problem Ashish Runthala (Sat Aug 15 2009 - 04:57:48 CDT)
Re: [AMBER] Charge Problem FyD (Sat Aug 15 2009 - 07:06:45 CDT)
Re: [AMBER] AMBER job restart problem Kefa Lu (Sat Aug 15 2009 - 05:12:21 CDT)
Re: [AMBER] pmemd michael (Sat Aug 15 2009 - 06:30:28 CDT)
Re: [AMBER] AMBER job restart problem case (Sat Aug 15 2009 - 08:49:44 CDT)
Re: [AMBER] AMBER job restart problem Ashish Runthala (Sat Aug 15 2009 - 09:39:56 CDT)
Re: [AMBER] AMBER job restart problem case (Sat Aug 15 2009 - 10:40:51 CDT)
Re: [AMBER] AMBER job restart problem Thomas Cheatham (Sat Aug 15 2009 - 10:49:10 CDT)
Re: [AMBER] MM_PBSA not successful monnet.jordan_at_free.fr (Sat Aug 15 2009 - 17:10:08 CDT)
RE: [AMBER] MM-GBSA nmode error for explicit solvent system only but not for implicit solvent system. Why? Catein Catherine (Sat Aug 15 2009 - 21:45:34 CDT)
Re: [AMBER] MM-GBSA nmode error for explicit solvent system only but not for implicit solvent system. Why? Ashish Runthala (Sat Aug 15 2009 - 22:59:11 CDT)
RE: [AMBER] MM-GBSA nmode error for explicit solvent system only but not for implicit solvent system. Why? Catein Catherine (Sat Aug 15 2009 - 23:12:42 CDT)
[AMBER] Can I do DNA bending with AMBER? Catein Catherine (Sat Aug 15 2009 - 23:15:26 CDT)
[AMBER] Should I neutralize the models with Na+ or Mg2+ containing DNA and protein residues Catein Catherine (Sat Aug 15 2009 - 23:18:28 CDT)
[AMBER] What is the parameters for Mg2+? Catein Catherine (Sat Aug 15 2009 - 23:21:46 CDT)
Re: [AMBER] AMBER job restart problem Kefa Lu (Sat Aug 15 2009 - 23:36:59 CDT)
RE: [AMBER] MM-GBSA nmode error for explicit solvent system only but not for implicit solvent system. Why? Ross Walker (Sat Aug 15 2009 - 23:40:26 CDT)
Re: [AMBER] AMBER job restart problem Thomas Cheatham (Sat Aug 15 2009 - 23:44:27 CDT)
Re: [AMBER] AMBER job restart problem Kefa Lu (Sun Aug 16 2009 - 00:09:22 CDT)
Re:Re: Re: [AMBER] box problem Nancy (Sun Aug 16 2009 - 02:31:02 CDT)
Re: [AMBER] Can I do DNA bending with AMBER? case (Sun Aug 16 2009 - 08:13:05 CDT)
Re: [AMBER] Should I neutralize the models with Na+ or Mg2+ containing DNA and protein residues case (Sun Aug 16 2009 - 08:14:14 CDT)
Re: Re: Re: [AMBER] box problem Ashish Runthala (Sun Aug 16 2009 - 09:00:50 CDT)
[AMBER] AMBER on a Mac Mini cluster PoC Abdul Rehman Gani (Sun Aug 16 2009 - 10:51:44 CDT)
Re: [AMBER] What is the parameters for Mg2+? Tom Joseph (Sun Aug 16 2009 - 11:00:35 CDT)
RE: [AMBER] Strange QM/MM Divcon - help me out Ross Walker (Sun Aug 16 2009 - 11:55:01 CDT)
RE: Re: [AMBER] box problem Ross Walker (Sun Aug 16 2009 - 11:59:59 CDT)
RE: [AMBER] AMBER on a Mac Mini cluster PoC Ross Walker (Sun Aug 16 2009 - 12:08:47 CDT)
Re: [AMBER] MM_PBSA not successful workalemahu berhanu (Sun Aug 16 2009 - 12:22:01 CDT)
RE: [AMBER] MM_PBSA not successful Ross Walker (Sun Aug 16 2009 - 13:15:42 CDT)
Re: [AMBER] MM-PBSA: decompose energy error Maria Mirza (Sun Aug 16 2009 - 14:49:06 CDT)
[AMBER] Variations of the number of total hydrogen bond in MD simulations using ptraj workalemahu berhanu (Sun Aug 16 2009 - 15:13:21 CDT)
[AMBER] Conference or workshop on AMBER? Catein Catherine (Mon Aug 17 2009 - 00:56:41 CDT)
RE: [AMBER] MM-GBSA nmode error for explicit solvent system only but not for implicit solvent system. Why? Catein Catherine (Mon Aug 17 2009 - 00:58:49 CDT)
RE: [AMBER] What is the parameters for Mg2+? Catein Catherine (Mon Aug 17 2009 - 00:59:23 CDT)
RE: [AMBER] Can I do DNA bending with AMBER? Catein Catherine (Mon Aug 17 2009 - 01:00:08 CDT)
Re: [AMBER] MM-GBSA nmode error for explicit solvent system only but not for implicit solvent system. Why? Ashish Runthala (Mon Aug 17 2009 - 01:21:45 CDT)
[AMBER] gaussain output subarna thakur (Mon Aug 17 2009 - 02:11:00 CDT)
Re: [AMBER] gaussain output FyD (Mon Aug 17 2009 - 04:50:53 CDT)
Re: [AMBER] AMBER on a Mac Mini cluster PoC Abdul Rehman Gani (Mon Aug 17 2009 - 03:13:38 CDT)
[AMBER] [AmberTool] xleap problem ÁÖÅÂ¼º (Mon Aug 17 2009 - 03:57:37 CDT)
Re: [AMBER] AMBER on a Mac Mini cluster PoC Alan (Mon Aug 17 2009 - 05:50:30 CDT)
Re: [AMBER] AMBER on a Mac Mini cluster PoC Abdul Rehman Gani (Mon Aug 17 2009 - 07:31:37 CDT)
[AMBER] amber 10 test fails with pathscale 3.2 Raj (Mon Aug 17 2009 - 07:54:45 CDT)
Re: [AMBER] Variations of the number of total hydrogen bond in MD simulations using ptraj workalemahu berhanu (Mon Aug 17 2009 - 08:26:35 CDT)
RE: [AMBER] Conference or workshop on AMBER? Ross Walker (Mon Aug 17 2009 - 09:22:14 CDT)
Re: [AMBER] AMBER on a Mac Mini cluster PoC - solved Abdul Rehman Gani (Mon Aug 17 2009 - 09:44:07 CDT)
[AMBER] amber test fails with ICC 11.0.081 Raj (Mon Aug 17 2009 - 09:57:57 CDT)
Re: [AMBER] amber test fails with ICC 11.0.081 Carlos Simmerling (Mon Aug 17 2009 - 10:16:26 CDT)
[AMBER] Can i link and refine two domains of a single protein Ashish Runthala (Mon Aug 17 2009 - 10:32:33 CDT)
RE: [AMBER] amber 10 test fails with pathscale 3.2 Ross Walker (Mon Aug 17 2009 - 11:34:28 CDT)
Re: [AMBER] Variations of the number of total hydrogen bond in MD simulations using ptraj Paul Frybarger (Mon Aug 17 2009 - 12:57:28 CDT)
Re: [AMBER] gaussain output FyD (Mon Aug 17 2009 - 17:59:39 CDT)
[AMBER] Re: [q4md-fft] charge calculation FyD (Mon Aug 17 2009 - 18:40:49 CDT)
[AMBER] AMBER is running silently Kefa Lu (Mon Aug 17 2009 - 17:47:34 CDT)
Re: [AMBER] AMBER is running silently Bill Ross (Mon Aug 17 2009 - 18:04:02 CDT)
Re: [AMBER] AMBER is running silently Kefa Lu (Mon Aug 17 2009 - 18:10:17 CDT)
RE: [AMBER] AMBER is running silently Ross Walker (Mon Aug 17 2009 - 18:33:09 CDT)
Re: [AMBER] AMBER is running silently Kefa Lu (Mon Aug 17 2009 - 20:25:14 CDT)
RE: [AMBER] Conference or workshop on AMBER? Catein Catherine (Mon Aug 17 2009 - 21:30:04 CDT)
Re:Re: [AMBER] box problem Nancy (Mon Aug 17 2009 - 21:49:20 CDT)
Re: [AMBER] MM-GBSA nmode error for explicit solvent system only but not for implicit solvent system. Why? case (Mon Aug 17 2009 - 21:56:17 CDT)
RE: [AMBER] Conference or workshop on AMBER? Ross Walker (Mon Aug 17 2009 - 22:00:14 CDT)
Re: [AMBER] box problem Nancy (Mon Aug 17 2009 - 22:02:21 CDT)
Re: [AMBER] MM-GBSA nmode error for explicit solvent system only but not for implicit solvent system. Why? Ashish Runthala (Mon Aug 17 2009 - 22:02:43 CDT)
Re: [AMBER] Conference or workshop on AMBER? Ashish Runthala (Mon Aug 17 2009 - 22:04:12 CDT)
Re: [AMBER] box problem Ashish Runthala (Mon Aug 17 2009 - 22:08:28 CDT)
Re:Re: [AMBER] box problem Nancy (Mon Aug 17 2009 - 22:18:02 CDT)
Re:Re: [AMBER] box problem Nancy (Mon Aug 17 2009 - 22:27:59 CDT)
RE: [AMBER] Conference or workshop on AMBER? Ross Walker (Mon Aug 17 2009 - 23:15:52 CDT)
[AMBER] Is it the correct procedures to strip water for MM/GBSA calculations? Catein Catherine (Tue Aug 18 2009 - 00:06:18 CDT)
RE: [AMBER] Conference or workshop on AMBER? Dharmik Meghana shankar (Tue Aug 18 2009 - 00:25:25 CDT)
[AMBER] antechamber execution subarna thakur (Tue Aug 18 2009 - 01:06:52 CDT)
RE: [AMBER] Conference or workshop on AMBER? Thank you. Catein Catherine (Tue Aug 18 2009 - 01:44:45 CDT)
[AMBER] Can i link and refine the modeled domains with different proteins bound on it Ashish Runthala (Tue Aug 18 2009 - 06:13:23 CDT)
[AMBER] RDC import from PALES Thomas Pochapsky (Tue Aug 18 2009 - 09:33:42 CDT)
[AMBER] Dimethyl Sulfoxide (DMSO) cartesian coordinates? Jose Borreguero (Tue Aug 18 2009 - 09:37:39 CDT)
Re: [AMBER] antechamber am1-bcc issues Khavrutskii, Ilja (Tue Aug 18 2009 - 16:00:03 CDT)
Re: [AMBER] antechamber execution FyD (Tue Aug 18 2009 - 18:59:40 CDT)
Re: [AMBER] Dimethyl Sulfoxide (DMSO) cartesian coordinates? FyD (Tue Aug 18 2009 - 19:05:19 CDT)
Re: [AMBER] Dimethyl Sulfoxide (DMSO) cartesian coordinates? Jose Borreguero (Tue Aug 18 2009 - 17:33:32 CDT)
Re: [AMBER] Dimethyl Sulfoxide (DMSO) cartesian coordinates? Bill Ross (Tue Aug 18 2009 - 17:59:12 CDT)
[AMBER] ***PROBLEMS WITH GROUPLRES Maria Mirza (Tue Aug 18 2009 - 19:34:41 CDT)
[AMBER] Distance restraint and periodic boundary conditions Cyril Falvo (Tue Aug 18 2009 - 19:58:29 CDT)
Re: [AMBER] Distance restraint and periodic boundary conditions Thomas Cheatham (Tue Aug 18 2009 - 20:23:56 CDT)
Re: [AMBER] Distance restraint and periodic boundary conditions case (Tue Aug 18 2009 - 21:02:45 CDT)
[AMBER] RESP charges of Fe4S4 cluster subarna thakur (Wed Aug 19 2009 - 02:53:20 CDT)
AW: [AMBER] Conference or workshop on AMBER? Aust, Susanne (Wed Aug 19 2009 - 03:16:21 CDT)
Re: [AMBER] RESP charges of Fe4S4 cluster vhakkim boy (Wed Aug 19 2009 - 03:40:59 CDT)
[AMBER] resp calculation for rubredoxin vhakkim boy (Wed Aug 19 2009 - 05:11:22 CDT)
[AMBER] Problem with loading PDB into tleap Kamali Sripathi (Wed Aug 19 2009 - 08:21:30 CDT)
Re: [AMBER] Problem with loading PDB into tleap Ashish Runthala (Wed Aug 19 2009 - 08:56:59 CDT)
Re: [AMBER] Problem with loading PDB into tleap Kamali Sripathi (Wed Aug 19 2009 - 09:06:15 CDT)
Re: [AMBER] Problem with loading PDB into tleap Ashish Runthala (Wed Aug 19 2009 - 10:03:19 CDT)
Re: [AMBER] Distance restraint and periodic boundary conditions Peter Varnai (Wed Aug 19 2009 - 10:13:04 CDT)
[AMBER] why is nonpolar solvation energy not implemented for dynamic in amber TaoPaul (Wed Aug 19 2009 - 10:29:38 CDT)
Re: [AMBER] Distance restraint and periodic boundary conditions Peter Varnai (Wed Aug 19 2009 - 11:16:01 CDT)
Re: [AMBER] Distance restraint and periodic boundary conditions Keith Van Nostrand (Wed Aug 19 2009 - 11:44:49 CDT)
Re: [AMBER] Problem with loading PDB into tleap ksripath_at_umich.edu (Wed Aug 19 2009 - 14:00:22 CDT)
[AMBER] angle with ptraj E.M. (Wed Aug 19 2009 - 14:27:29 CDT)
RE: [AMBER] angle with ptraj Seetin, Matthew (Wed Aug 19 2009 - 14:42:07 CDT)
[AMBER] Re: angle with ptraj E.M. (Wed Aug 19 2009 - 14:44:56 CDT)
Re: [AMBER] Problem with loading PDB into tleap case (Wed Aug 19 2009 - 18:55:52 CDT)
Re: [AMBER] Distance restraint and periodic boundary conditions case (Wed Aug 19 2009 - 19:53:15 CDT)
Re: [AMBER] Problem with loading PDB into tleap Ashish Runthala (Wed Aug 19 2009 - 21:53:04 CDT)
[AMBER] ptraj cluster - snapshot number of a representative structure Marcin Krol (Thu Aug 20 2009 - 03:26:09 CDT)
Re: [AMBER] antechamber am1-bcc issues Alan (Thu Aug 20 2009 - 03:28:09 CDT)
Re: [AMBER] antechamber am1-bcc issues case (Thu Aug 20 2009 - 06:18:52 CDT)
Re: [AMBER] antechamber am1-bcc issues Khavrutskii, Ilja (Thu Aug 20 2009 - 06:37:47 CDT)
Re: [AMBER] antechamber am1-bcc issues Khavrutskii, Ilja (Thu Aug 20 2009 - 07:03:43 CDT)
Re: [AMBER] antechamber am1-bcc issues gilbert_at_bluemarble.net (Thu Aug 20 2009 - 07:37:53 CDT)
Re: [AMBER] antechamber am1-bcc issues Khavrutskii, Ilja (Thu Aug 20 2009 - 08:04:44 CDT)
[AMBER] box volume not understood? Jio M (Thu Aug 20 2009 - 08:54:52 CDT)
RE: [AMBER] antechamber am1-bcc issues Ross Walker (Thu Aug 20 2009 - 09:29:14 CDT)
Re: [AMBER] Distance restraint and periodic boundary conditions Peter Varnai (Thu Aug 20 2009 - 10:23:48 CDT)
RE: [AMBER] box volume not understood? Ross Walker (Thu Aug 20 2009 - 10:43:42 CDT)
Re: [AMBER] ptraj cluster - snapshot number of a representative structure Jianyin Shao (Thu Aug 20 2009 - 10:50:22 CDT)
RE: [AMBER] box volume not understood? Jio M (Thu Aug 20 2009 - 13:26:41 CDT)
[AMBER] center of mass dhacademic (Thu Aug 20 2009 - 15:50:47 CDT)
RE: [AMBER] box volume not understood? Ross Walker (Thu Aug 20 2009 - 18:21:00 CDT)
RE: [AMBER] box volume not understood? Bill Ross (Thu Aug 20 2009 - 21:53:52 CDT)
RE: [AMBER] box volume not understood? Jio M (Thu Aug 20 2009 - 23:43:31 CDT)
[AMBER] mm_pbsa-Binding and Stability tests? Antonija TomiÄ‡ (Fri Aug 21 2009 - 05:04:35 CDT)
[AMBER] How to strip water for MM/GBSA calculations? Catein Catherine (Fri Aug 21 2009 - 05:38:27 CDT)
Re: [AMBER] How to strip water for MM/GBSA calculations? Carlos Simmerling (Fri Aug 21 2009 - 05:53:59 CDT)
Re: [AMBER] RESP charges of Fe4S4 cluster case (Fri Aug 21 2009 - 09:13:23 CDT)
RE: [AMBER] mm_pbsa-Binding and Stability tests? Niel Henriksen (Fri Aug 21 2009 - 09:52:49 CDT)
RE: [AMBER] box volume not understood? Bill Ross (Fri Aug 21 2009 - 11:15:51 CDT)
Re: [AMBER] Re: antechamber am1-bcc issues Khavrutskii, Ilja (Fri Aug 21 2009 - 11:27:28 CDT)
[AMBER] update on am1-bcc charge problem in antechamber case (Fri Aug 21 2009 - 11:32:30 CDT)
Re: [AMBER] Re: antechamber am1-bcc issues Khavrutskii, Ilja (Fri Aug 21 2009 - 14:32:34 CDT)
[AMBER] PMEMD 10 overflow issues ben rodriguez (Fri Aug 21 2009 - 15:38:05 CDT)
RE: [AMBER] PMEMD 10 overflow issues Ross Walker (Fri Aug 21 2009 - 15:57:12 CDT)
RE: [AMBER] PMEMD 10 overflow issues ben rodriguez (Fri Aug 21 2009 - 16:17:36 CDT)
Re: [AMBER] mm_pbsa-Binding and Stability tests? Ray Luo (Fri Aug 21 2009 - 16:29:58 CDT)
[AMBER] Gaussian network model (GNM) Chih-Ying Lin (Fri Aug 21 2009 - 19:39:07 CDT)
Re: [AMBER] Gaussian network model (GNM) Adrian Roitberg (Fri Aug 21 2009 - 19:49:04 CDT)
Re: [AMBER] PMEMD 10 overflow issues Ashish Runthala (Fri Aug 21 2009 - 21:52:55 CDT)
[AMBER] protein-ligand binding simulation times Andrew Voronkov (Sat Aug 22 2009 - 00:09:54 CDT)
[AMBER] ambpdb water removal for rst files Andrew Voronkov (Sat Aug 22 2009 - 01:53:14 CDT)
Re: [AMBER] protein-ligand binding simulation times steinbrt_at_rci.rutgers.edu (Sat Aug 22 2009 - 04:50:35 CDT)
Re: [AMBER] protein-ligand binding simulation times Andrew Voronkov (Sat Aug 22 2009 - 05:32:42 CDT)
Re: [AMBER] ambpdb water removal for rst files Bill Ross (Sat Aug 22 2009 - 09:45:30 CDT)
RE: [AMBER] PMEMD 10 overflow issues Ross Walker (Sat Aug 22 2009 - 12:21:30 CDT)
RE: [AMBER] PMEMD 10 overflow issues Ross Walker (Sat Aug 22 2009 - 12:25:31 CDT)
[AMBER] ptraj-rms vs carnal; questions on RMSD of ligand drift Andrew Voronkov (Sun Aug 23 2009 - 06:55:01 CDT)
[AMBER] Re: AMBER: WARNING in readAmberTrajectory(): Set #7918 is corrupted (-) Andrew Voronkov (Sun Aug 23 2009 - 08:48:07 CDT)
Re: [AMBER] Distance restraint and periodic boundary conditions Robert Duke (Sun Aug 23 2009 - 09:50:56 CDT)
[AMBER] acetone lib and frcmod files? Jose Borreguero (Sun Aug 23 2009 - 16:36:43 CDT)
[AMBER] ABMD Reaction Coordinates stephane acoca (Sun Aug 23 2009 - 22:11:09 CDT)
[AMBER] ABMD Reaction Coordinates stephane acoca (Sun Aug 23 2009 - 22:24:32 CDT)
[AMBER] ABMD Reaction Coordinates stephane acoca (Sun Aug 23 2009 - 22:25:43 CDT)
[AMBER] ABMD Reaction Coordinates stephane acoca (Mon Aug 24 2009 - 00:04:58 CDT)
RE: [AMBER] acetone lib and frcmod files? Ross Walker (Mon Aug 24 2009 - 00:08:16 CDT)
[AMBER] Note regarding posting of the same message multiple times Ross Walker (Mon Aug 24 2009 - 00:19:36 CDT)
RE: [AMBER] acetone lib and frcmod files? FyD (Mon Aug 24 2009 - 02:31:40 CDT)
[AMBER] Meaning of GMAX E.M. (Mon Aug 24 2009 - 04:05:10 CDT)
RE: [AMBER] mm_pbsa-Binding and Stability tests? Antonija TomiÄ‡ (Mon Aug 24 2009 - 04:51:28 CDT)
Re: [AMBER] Meaning of GMAX case (Mon Aug 24 2009 - 06:44:34 CDT)
Re: [AMBER] acetone lib and frcmod files? Jose Borreguero (Mon Aug 24 2009 - 07:56:51 CDT)
Re: [AMBER] pmemd Robert Duke (Mon Aug 24 2009 - 08:42:05 CDT)
[AMBER] how to add a new atomtype for MM/GB/SA decomposition analysis TaoPaul (Mon Aug 24 2009 - 09:03:51 CDT)
Re: [AMBER] Meaning of GMAX Ashish Runthala (Mon Aug 24 2009 - 09:59:53 CDT)
Re: [AMBER] Meaning of GMAX Adrian Roitberg (Mon Aug 24 2009 - 10:05:36 CDT)
Re: [AMBER] Meaning of GMAX Ashish Runthala (Mon Aug 24 2009 - 10:38:46 CDT)
[AMBER] ptraj limit on trajectory size Sasha Buzko (Mon Aug 24 2009 - 11:59:30 CDT)
RE: [AMBER] mm_pbsa-Binding and Stability tests? Niel Henriksen (Mon Aug 24 2009 - 12:24:09 CDT)
Re: [AMBER] acetone lib and frcmod files? FyD (Mon Aug 24 2009 - 15:13:33 CDT)
Re: [AMBER] acetone lib and frcmod files? Jose Borreguero (Mon Aug 24 2009 - 16:34:07 CDT)
RE: [AMBER] ptraj limit on trajectory size Ross Walker (Mon Aug 24 2009 - 17:07:00 CDT)
Re: [AMBER] ptraj limit on trajectory size Sasha Buzko (Mon Aug 24 2009 - 17:31:14 CDT)
[AMBER] problem compiling amber tools with gcc-4.4.1 gilbert_at_bluemarble.net (Mon Aug 24 2009 - 22:07:44 CDT)
[AMBER] sander does not print out all residues in range. Maria Mirza (Mon Aug 24 2009 - 23:32:31 CDT)
[AMBER] NATOM in prmtop and inpcrd files does not agree with the input Maria Mirza (Mon Aug 24 2009 - 23:41:39 CDT)
RE: [AMBER] NATOM in prmtop and inpcrd files does not agree with the input Ross Walker (Mon Aug 24 2009 - 23:55:52 CDT)
RE: [AMBER] sander does not print out all residues in range. Ross Walker (Tue Aug 25 2009 - 00:00:03 CDT)
Re: [AMBER] sander does not print out all residues in range. Maria Mirza (Tue Aug 25 2009 - 00:17:59 CDT)
Re: [AMBER] NATOM in prmtop and inpcrd files does not agree with the input Ashish Runthala (Tue Aug 25 2009 - 00:45:33 CDT)
Re: [AMBER] acetone lib and frcmod files? FyD (Tue Aug 25 2009 - 02:47:50 CDT)
Re: [AMBER] acetone lib and frcmod files? FyD (Tue Aug 25 2009 - 02:50:57 CDT)
[AMBER] ambertools test faied subarna thakur (Tue Aug 25 2009 - 06:01:12 CDT)
Re: [AMBER] ambertools test faied case (Tue Aug 25 2009 - 06:39:16 CDT)
[AMBER] Epsilon value for Iron bharat lakhani (Tue Aug 25 2009 - 07:24:10 CDT)
Re: [AMBER] problem compiling amber tools with gcc-4.4.1 case (Tue Aug 25 2009 - 07:52:35 CDT)
RE: [AMBER] NATOM in prmtop and inpcrd files does not agree with the input Ross Walker (Tue Aug 25 2009 - 12:55:39 CDT)
[AMBER] Single Adenine ros (Wed Aug 26 2009 - 01:09:23 CDT)
[AMBER] Chirality error in pdb xiawei (Wed Aug 26 2009 - 02:02:43 CDT)
[AMBER] how much % of the total protein motion are described by the first eigenvector? Catein Catherine (Wed Aug 26 2009 - 04:05:17 CDT)
RE: [AMBER] mm_pbsa-Binding and Stability tests? Antonija TomiÄ‡ (Wed Aug 26 2009 - 04:15:54 CDT)
Re: [AMBER] how much % of the total protein motion are described by the first eigenvector? Hannes Loeffler (Wed Aug 26 2009 - 04:41:31 CDT)
[AMBER] ZPVE simple question ondrej.prenosil_at_marge.uochb.cas.cz (Wed Aug 26 2009 - 04:42:04 CDT)
Re: [AMBER] ZPVE simple question Jerome.GOLEBIOWSKI_at_unice.fr (Wed Aug 26 2009 - 06:15:00 CDT)
Re: [AMBER] Single Adenine case (Wed Aug 26 2009 - 06:36:09 CDT)
Re: [AMBER] ZPVE simple question case (Wed Aug 26 2009 - 06:41:27 CDT)
Re: [AMBER] Single Adenine case (Wed Aug 26 2009 - 06:48:36 CDT)
Re: [AMBER] Chirality error in pdb case (Wed Aug 26 2009 - 06:52:18 CDT)
[AMBER] Need you help bharat lakhani (Wed Aug 26 2009 - 08:41:17 CDT)
Re: [AMBER] Need you help Carlos Simmerling (Wed Aug 26 2009 - 08:48:20 CDT)
[AMBER] Re: question_on_MMPBSA jackie (Wed Aug 26 2009 - 10:08:01 CDT)
[AMBER] Inquiries about antechamber Yikan Chen (Wed Aug 26 2009 - 12:07:20 CDT)
Re: [AMBER] Single Adenine ros (Wed Aug 26 2009 - 12:50:54 CDT)
Re: [AMBER] Single Adenine Bill Ross (Wed Aug 26 2009 - 14:28:31 CDT)
Re: [AMBER] Inquiries about antechamber Nicholas Musolino (Wed Aug 26 2009 - 16:02:21 CDT)
Re: [AMBER] Inquiries about antechamber Yikan Chen (Wed Aug 26 2009 - 21:05:40 CDT)
RE: [AMBER] Re: question_on_MMPBSA Catein Catherine (Thu Aug 27 2009 - 00:55:59 CDT)
RE: [AMBER] how much % of the total protein motion are described by the first eigenvector? Catein Catherine (Thu Aug 27 2009 - 00:58:27 CDT)
Re: [AMBER] Inquiries about antechamber FyD (Thu Aug 27 2009 - 01:15:55 CDT)
Re: [AMBER] Single Adenine FyD (Thu Aug 27 2009 - 02:05:54 CDT)
RE: [AMBER] how much % of the total protein motion are described by the first eigenvector? Hannes Loeffler (Thu Aug 27 2009 - 02:21:28 CDT)
RE: [AMBER] how much % of the total protein motion are described by the first eigenvector? Catein Catherine (Thu Aug 27 2009 - 05:02:37 CDT)
Re: [AMBER] Re: question_on_MMPBSA jackie (Thu Aug 27 2009 - 10:41:28 CDT)
Re: [AMBER] Inquiries about antechamber jackie (Thu Aug 27 2009 - 10:48:24 CDT)
Re: [AMBER] how much % of the total protein motion are described by the first eigenvector? jackie (Thu Aug 27 2009 - 10:52:19 CDT)
Re: [AMBER] Single Adenine ros (Thu Aug 27 2009 - 11:27:06 CDT)
[AMBER] SCC-DFTB MD for mercury ions in proteins Vaida Arciðauskaitë (Thu Aug 27 2009 - 11:41:17 CDT)
Re: [AMBER] SCC-DFTB MD for mercury ions in proteins Adrian Roitberg (Thu Aug 27 2009 - 11:51:21 CDT)
Re: [AMBER] Single Adenine FyD (Thu Aug 27 2009 - 16:20:48 CDT)
[AMBER] Setting a constrain in one direction Darren Yang (Thu Aug 27 2009 - 22:15:30 CDT)
Re: [AMBER] Setting a constrain in one direction Nicholas Musolino (Thu Aug 27 2009 - 22:40:54 CDT)
RE: [AMBER] Chirality error in pdb xiawei (Fri Aug 28 2009 - 01:41:45 CDT)
[AMBER] Regarding principal component analysis using ptraj Arvind Marathe (Fri Aug 28 2009 - 01:54:40 CDT)
Re: [AMBER] Regarding principal component analysis using ptraj Hannes Loeffler (Fri Aug 28 2009 - 02:28:29 CDT)
Re: [AMBER] Regarding principal component analysis using ptraj Arvind Marathe (Fri Aug 28 2009 - 06:04:22 CDT)
Re: [AMBER] Chirality error in pdb case (Fri Aug 28 2009 - 06:33:41 CDT)
Re: [AMBER] Regarding principal component analysis using ptraj Hannes Loeffler (Fri Aug 28 2009 - 06:45:05 CDT)
Re: [AMBER] Regarding principal component analysis using ptraj Arvind Marathe (Fri Aug 28 2009 - 06:56:53 CDT)
Re: [AMBER] RDC import from PALES case (Fri Aug 28 2009 - 07:01:30 CDT)
[AMBER] (no subject) workalemahu berhanu (Fri Aug 28 2009 - 09:06:56 CDT)
RE: [AMBER] Setting a constrain in one direction matthew_seetin_at_urmc.rochester.edu (Fri Aug 28 2009 - 09:35:57 CDT)
Re: [AMBER] (no subject) workalemahu berhanu (Fri Aug 28 2009 - 11:22:31 CDT)
[AMBER] nmr restraint for angle between vectors Peter Varnai (Fri Aug 28 2009 - 20:10:20 CDT)
[AMBER] about file format Jia Xu (Sat Aug 29 2009 - 02:55:49 CDT)
[AMBER] radius for Manganese ion Chunliyan (Sat Aug 29 2009 - 09:43:00 CDT)
[AMBER] Dyndom Chunliyan (Sat Aug 29 2009 - 09:43:00 CDT)
Re: [AMBER] about file format Tom Joseph (Sat Aug 29 2009 - 09:50:37 CDT)
Re: [AMBER] Dyndom Carlos Simmerling (Sat Aug 29 2009 - 09:59:23 CDT)
[AMBER] (no subject) workalemahu berhanu (Sat Aug 29 2009 - 10:29:34 CDT)
RE: [AMBER] Dyndom Loeffler, Hannes (STFC,DL,CSE) (Sat Aug 29 2009 - 10:18:18 CDT)
Re: [AMBER] about file format Jia Xu (Sun Aug 30 2009 - 00:32:30 CDT)
[AMBER] problem with 4-Hydroxyl-Proline tutorial Jia Xu (Sun Aug 30 2009 - 02:46:18 CDT)
[AMBER] Changing pH of the system nicholus bhattacharjee (Sun Aug 30 2009 - 06:13:17 CDT)
Re: [AMBER] Changing pH of the system Adrian Roitberg (Sun Aug 30 2009 - 10:26:01 CDT)
Re: [AMBER] Changing pH of the system nicholus bhattacharjee (Sun Aug 30 2009 - 10:40:42 CDT)
Re: [AMBER] Changing pH of the system Adrian Roitberg (Sun Aug 30 2009 - 11:18:32 CDT)
Re: [AMBER] radius for Manganese ion E.M. (Sun Aug 30 2009 - 18:38:38 CDT)
[AMBER] WATERSHELL Mannan (Mon Aug 31 2009 - 00:02:51 CDT)
Re: [AMBER] (no subject) workalemahu berhanu (Mon Aug 31 2009 - 00:19:27 CDT)
[AMBER] How to derive charges from the output bharat lakhani (Mon Aug 31 2009 - 00:33:21 CDT)
Re: [AMBER] How to derive charges from the output Barbault Florent (Mon Aug 31 2009 - 02:38:09 CDT)
[AMBER] Query regarding watershell command Mannan (Mon Aug 31 2009 - 05:38:08 CDT)
[AMBER] divcon question Andrei Neamtu (Mon Aug 31 2009 - 06:31:35 CDT)
[AMBER] ATP/GTP parameters Steve Seibold (Mon Aug 31 2009 - 07:33:04 CDT)
Re: [AMBER] divcon question case (Mon Aug 31 2009 - 07:34:14 CDT)
Re: [AMBER] ATP/GTP parameters case (Mon Aug 31 2009 - 07:41:22 CDT)
[AMBER] GTP/ATP parameters Steve Seibold (Mon Aug 31 2009 - 07:44:56 CDT)
Re: [AMBER] How to derive charges from the output bharat lakhani (Mon Aug 31 2009 - 08:43:15 CDT)
[AMBER] momentum in MD simulation dhacademic (Mon Aug 31 2009 - 09:37:42 CDT)
[AMBER] antechamber bug report Matthew Walsh (Mon Aug 31 2009 - 11:43:08 CDT)
Re: [AMBER] antechamber bug report case (Mon Aug 31 2009 - 12:36:33 CDT)
[AMBER] Docking with Amber Jordan, Brad (Mon Aug 31 2009 - 15:01:15 CDT)
Re: [AMBER] problem with 4-Hydroxyl-Proline tutorial FyD (Mon Aug 31 2009 - 15:10:52 CDT)
Re: [AMBER] ATP/GTP parameters FyD (Mon Aug 31 2009 - 15:20:50 CDT)
Re: [AMBER] How to derive charges from the output FyD (Mon Aug 31 2009 - 15:35:46 CDT)
Re: [AMBER] ATP/GTP parameters E.M. (Mon Aug 31 2009 - 15:50:09 CDT)
[AMBER] ACE and NME patch: VMD ??? Siddharth Rastogi (Mon Aug 31 2009 - 19:25:47 CDT)
Re: [AMBER] Docking with Amber case (Mon Aug 31 2009 - 19:58:49 CDT)
[AMBER] how to pull a dna balaji nagarajan (Mon Aug 31 2009 - 21:39:10 CDT)
Re: [AMBER] ATP/GTP parameters E.M. (Mon Aug 31 2009 - 23:48:39 CDT)

Last message date: Thu Dec 31 2009 - 22:57:46 CST
Archived on: Thu Dec 31 2009 - 22:58:33 CST

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