AMBER Archive (2009)

Subject: RE: [AMBER] Problem with Amber8

From: Ross Walker (ross_at_rosswalker.co.uk)
Date: Mon Aug 03 2009 - 14:41:28 CDT

Hi Sebastian,

There could be a number of causes of this and it could be a little difficult
to track down what is wrong without some extensive digging. One thing I
would try first though is to see if you can use a different compiler
version. E.g. try ifort v10.0 or v11.0. It is possible that it is a simple
compiler bug and this may be enough to fix it. If this doesn't help let me
know and we can try digging a little deeper.

All the best
Ross

> -----Original Message-----
> From: amber-bounces_at_ambermd.org [mailto:amber-bounces_at_ambermd.org] On
> Behalf Of Sebastian Petruczynik
> Sent: Monday, August 03, 2009 6:29 AM
> To: amber_at_ambermd.org
> Subject: [AMBER] Problem with Amber8
>
>
> Hello,
>
> I have a little problem with Amber8:
>
> cd newton_raph; ./Run.newton_raph
> forrtl: severe (174): SIGSEGV, segmentation fault occurred
> Image PC Routine Line
> Source
> nmode 000000000042362A Unknown Unknown
> Unknown
> nmode 00000000004109A6 Unknown Unknown
> Unknown
> nmode 0000000000409199 Unknown Unknown
> Unknown
> nmode 0000000000427879 Unknown Unknown
> Unknown
> nmode 0000000000405B22 Unknown Unknown
> Unknown
> nmode 0000000000403422 Unknown Unknown
> Unknown
> libc.so.6 0000003D56F1C3FB Unknown Unknown
> Unknown
> nmode 000000000040336A Unknown Unknown
> Unknown
> ./Run.newton_raph: Program error
> make: *** [test.nmode] Error 1
> -----------------------------------------------------------------------
> -------------------------------
> ulimit -a
> core file size (blocks, -c) 0
> data seg size (kbytes, -d) unlimited
> file size (blocks, -f) unlimited
> pending signals (-i) unlimited
> max locked memory (kbytes, -l) 2097152
> max memory size (kbytes, -m) unlimited
> open files (-n) 1024
> pipe size (512 bytes, -p) 8
> POSIX message queues (bytes, -q) unlimited
> stack size (kbytes, -s) unlimited
> cpu time (seconds, -t) unlimited
> max user processes (-u) unlimited
> virtual memory (kbytes, -v) unlimited
> file locks (-x) unlimited
> -----------------------------------------------------------------------
> ---------------------------------
> Architecture: Intel Xeon 5160 4-cores
> Compiler: Intel 10.1
> http://ambermd.org/bugfixes80.html applied
>
> What should I do, to fix this problem?
>
> Best regards,
>
> -sebastian
>
> --
> Sebastian Petruczynik, Systems Administrator
> Poznan Supercomputing & Networking Center
>
>
>
>
>
>
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