AMBER Archive (2009)

Subject: [AMBER] about file format

From: Jia Xu (xujia.ruc_at_gmail.com)
Date: Sat Aug 29 2009 - 02:55:49 CDT

Dear amber users,

 I read the tutorial (http://ambermd.org/antechamber/pro4.html) to learn how
to generate the topology file for non-standard residues. However, I am
confused about the file format of prep file (
http://ambermd.org/antechamber/pro4.prepi) and topology file (
http://ambermd.org/antechamber/ala-pr4-ala.prmtop).

Could anyone tell me where can I find a description of the file format used
by amber?

Thanks in advance! 

-- 
Jia Xu
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