AMBER Archive (2009)

Subject: Re: [AMBER] about file format

From: Tom Joseph (ttjoseph_at_gmail.com)
Date: Sat Aug 29 2009 - 09:50:37 CDT

http://ambermd.org/formats.html

--Tom

2009/8/29 Jia Xu <xujia.ruc_at_gmail.com>:
> Dear amber users,
>
>  I read the tutorial (http://ambermd.org/antechamber/pro4.html) to learn how
> to generate the topology file for non-standard residues. However, I am
> confused about the file format of prep file (
> http://ambermd.org/antechamber/pro4.prepi) and topology file (
> http://ambermd.org/antechamber/ala-pr4-ala.prmtop).
>
> Could anyone tell me where can I find a description of the file format used
> by amber?
>
> Thanks in advance!
>
>
> --
> Jia Xu
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>

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