AMBER Archive (2009)

Subject: [AMBER] Setting a constrain in one direction

From: Darren Yang (ydarren_at_gmail.com)
Date: Thu Aug 27 2009 - 22:15:30 CDT

Hi, Amber users.

I need help setting up a special type of MD simulation. Basically, I want to
have one atom in my system able to move in a plane (X/Y for example), and
have a harmonic potential constrain in the Z direction. I am not quite sure
how to do this or if there is a way?

Any suggestion will be greatly appreciated!
Darren
ydarren_at_gmail.com
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