AMBER Archive (2009)

Subject: Re: [AMBER] CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS FULL PDB

From: Hector A. Baldoni (hbaldoni_at_unsl.edu.ar)
Date: Wed Aug 12 2009 - 15:43:28 CDT

Hi Manish,

Use the free software "Discovery Studio Visualizer" (from Accelrys
software Inc.).

Load you PDB and then: Sequence > superimpose > Apply Transformation
matrix (check "create copy" and here you can select BIOMT_1..n ), seve
your proyect and that all.

Regards.

> On Wed, Aug 12, 2009, Manish Kumar wrote:
>>
>> How can I generate complete molecule by reading symmetry transformation
>> and
>> monomeric unit.
>
> Amber doesn't do such calculations itself. If you are getting structural
> information from the PDB, then those files have information about getting
> the
> "biological unit".
>
> ...good luck...dac
>
>
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---------------------------------
 Dr. Hector A. Baldoni
 Departamento de Quimica
 UNSL - IMASL (CONICET)
 Chacabuco 917 (D5700BWS)
 San Luis - Argentina
 hbaldoni at unsl.edu.ar
 Tel.:+54-(0)2652-423789 ext. 157
----------------------------------
TO ERR IS HUMAN - AND TO BLAME IT ON A COMPUTER IS EVEN MORE SO.

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