AMBER Archive (2009)

Subject: [AMBER] Showing error

From: bharat lakhani (lakhbharat_at_gmail.com)
Date: Sat Aug 01 2009 - 08:12:00 CDT

Actually I am creating library for Fe-Porphrin complex.As i have attached
that library here with name* HEM*.I am constructing a .top and .crd file. It
showing me some warning after creating top and crd file.Why is it happening
so i could not figure out till now.

WARNING: Unbonded Hydrogen atom H1 in MOL.
Cannot determine the requested GB radius for this atom.
Writing the unmodified Bondi GB radius.
WARNING: Unbonded Hydrogen atom H2 in MOL.
Cannot determine the requested GB radius for this atom.
Writing the unmodified Bondi GB radius.
WARNING: Unbonded Hydrogen atom H3 in MOL.
Cannot determine the requested GB radius for this atom.
Writing the unmodified Bondi GB radius.
WARNING: Unbonded Hydrogen atom H4 in MOL.
Cannot determine the requested GB radius for this atom.
Writing the unmodified Bondi GB radius.
WARNING: Unbonded Hydrogen atom H5 in MOL.
Cannot determine the requested GB radius for this atom.
Writing the unmodified Bondi GB radius.
WARNING: Unbonded Hydrogen atom H6 in MOL.
Cannot determine the requested GB radius for this atom.
Writing the unmodified Bondi GB radius.
WARNING: Unbonded Hydrogen atom H7 in MOL.
Cannot determine the requested GB radius for this atom.
Writing the unmodified Bondi GB radius.
WARNING: Unbonded Hydrogen atom H8 in MOL.
Cannot determine the requested GB radius for this atom.
Writing the unmodified Bondi GB radius.
WARNING: Unbonded Hydrogen atom H9 in MOL.
Cannot determine the requested GB radius for this atom.
Writing the unmodified Bondi GB radius.
WARNING: Unbonded Hydrogen atom H10 in MOL.
Cannot determine the requested GB radius for this atom.
Writing the unmodified Bondi GB radius.
WARNING: Unbonded Hydrogen atom H11 in MOL.
Cannot determine the requested GB radius for this atom.
Writing the unmodified Bondi GB radius.
WARNING: Unbonded Hydrogen atom H12 in MOL.
Cannot determine the requested GB radius for this atom.
Writing the unmodified Bondi GB radius.
WARNING: Unbonded Hydrogen atom H13 in MOL.
Cannot determine the requested GB radius for this atom.
Writing the unmodified Bondi GB radius.
WARNING: Unbonded Hydrogen atom H14 in MOL.
Cannot determine the requested GB radius for this atom.
Writing the unmodified Bondi GB radius.
WARNING: Unbonded Hydrogen atom H15 in MOL.
Cannot determine the requested GB radius for this atom.
Writing the unmodified Bondi GB radius.
WARNING: Unbonded Hydrogen atom H16 in MOL.
Cannot determine the requested GB radius for this atom.
Writing the unmodified Bondi GB radius.
WARNING: Unbonded Hydrogen atom H17 in MOL.
Cannot determine the requested GB radius for this atom.
Writing the unmodified Bondi GB radius.
WARNING: Unbonded Hydrogen atom H18 in MOL.
Cannot determine the requested GB radius for this atom.
Writing the unmodified Bondi GB radius.
WARNING: Unbonded Hydrogen atom H19 in MOL.
Cannot determine the requested GB radius for this atom.
Writing the unmodified Bondi GB radius.
WARNING: Unbonded Hydrogen atom H20 in MOL.
Cannot determine the requested GB radius for this atom.
Writing the unmodified Bondi GB radius.
WARNING: Unbonded Hydrogen atom H21 in MOL.
Cannot determine the requested GB radius for this atom.
Writing the unmodified Bondi GB radius.
WARNING: Unbonded Hydrogen atom H22 in MOL.
Cannot determine the requested GB radius for this atom.
Writing the unmodified Bondi GB radius.
WARNING: Unbonded Hydrogen atom H23 in MOL.
Cannot determine the requested GB radius for this atom.
Writing the unmodified Bondi GB radius.
WARNING: Unbonded Hydrogen atom H24 in MOL.
Cannot determine the requested GB radius for this atom.
Writing the unmodified Bondi GB radius.
WARNING: Unbonded Hydrogen atom H25 in MOL.
Cannot determine the requested GB radius for this atom.
Writing the unmodified Bondi GB radius.
WARNING: Unbonded Hydrogen atom H26 in MOL.
Cannot determine the requested GB radius for this atom.
Writing the unmodified Bondi GB radius.
WARNING: Unbonded Hydrogen atom H27 in MOL.
Cannot determine the requested GB radius for this atom.
Writing the unmodified Bondi GB radius.
WARNING: Unbonded Hydrogen atom H28 in MOL.
Cannot determine the requested GB radius for this atom.
Writing the unmodified Bondi GB radius.
WARNING: Unbonded Hydrogen atom H29 in MOL.
Cannot determine the requested GB radius for this atom.
Writing the unmodified Bondi GB radius.
WARNING: Unbonded Hydrogen atom H30 in MOL.
Cannot determine the requested GB radius for this atom.
Writing the unmodified Bondi GB radius.
WARNING: Unbonded Hydrogen atom H31 in MOL.
Cannot determine the requested GB radius for this atom.
Writing the unmodified Bondi GB radius.
WARNING: Unbonded Hydrogen atom H32 in MOL.
Cannot determine the requested GB radius for this atom.
Writing the unmodified Bondi GB radius.


  • application/octet-stream attachment: HEM

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