AMBER Archive (2009)

Subject: [AMBER] Problem with loading PDB into tleap

From: Kamali Sripathi (ksripath_at_umich.edu)
Date: Wed Aug 19 2009 - 08:21:30 CDT

Dear AMBER users,

I've been trying to load a modified PDB file into tleap, and it keeps adding
hydrogens only after the O3' of every guanosine residue. Then, when I use
saveamberparm to create topology and coordinate files, it says that there
are a lot of FATAL errors because the hydrogens that it added have no type.
Has anyone else encountered this problem?

Thanks,
Kamali
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