AMBER Archive (2009)

Subject: Re: [AMBER] Gaussian network model (GNM)

From: Adrian Roitberg (roitberg_at_qtp.ufl.edu)
Date: Fri Aug 21 2009 - 19:49:04 CDT

No,
The Normal modes computed in Amber are the real normal modes, coming
from the mass weighted hessian.

>
> Hi
> Is the Normal Node Analysis derived from Gaussian network model (GNM) ?
>
>
> Thank you
> Lin
>
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-- 
                            Dr. Adrian E. Roitberg
                              Associate Professor
                             Quantum Theory Project
                            Department of Chemistry

                  Senior Editor. Journal of Physical Chemistry
                           American Chemical Society

University of Florida                         PHONE 352 392-6972
P.O. Box 118435                               FAX   352 392-8722
Gainesville, FL 32611-8435                    Email adrian_at_qtp.ufl.edu

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