AMBER Archive (2007) - Dec 2007 By ThreadMost recent messages
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Starting: Sat Dec 01 2007 - 09:46:23 CST
Ending: Mon Dec 31 2007 - 14:38:21 CST
- AMBER: Minimization amber9 segmentation fault Francesco Pietra (Sat Dec 01 2007 - 09:46:23 CST)
- AMBER: mm_pbsa continue run Christopher Gaughan (Sun Dec 02 2007 - 12:46:42 CST)
- AMBER: I need some help in PTRAJ Vijay Manickam Achari (Mon Dec 03 2007 - 00:49:29 CST)
- AMBER: sander and pmemd Nadia Vahdati (Mon Dec 03 2007 - 07:20:17 CST)
- Fwd: Re: AMBER: Minimization amber9 segmentation fault Francesco Pietra (Mon Dec 03 2007 - 10:30:11 CST)
- AMBER: Free energy for part of the system jialei (Mon Dec 03 2007 - 13:12:47 CST)
- AMBER: During the Sander process, does the pH of the solution change orr not Fenghui Fan (Mon Dec 03 2007 - 19:58:44 CST)
- AMBER: Restraintmask syntax Francesco Pietra (Tue Dec 04 2007 - 09:30:50 CST)
- AMBER: Solution Structure Determination Protocols - Simulated Annealing Seth Lilavivat (Tue Dec 04 2007 - 11:23:16 CST)
- AMBER: correlation time Tuncel, Aytug (Tue Dec 04 2007 - 12:22:55 CST)
- AMBER: POPS Lipid Bilayer: Full Parameter/Topology File Lalit Dubey (Tue Dec 04 2007 - 18:39:29 CST)
- AMBER: phosphorylation bosco (Tue Dec 04 2007 - 19:36:27 CST)
- AMBER: (no subject) Madjid Taghdir (Wed Dec 05 2007 - 03:18:11 CST)
- AMBER: nmode ntrun=2 JM Beames (Wed Dec 05 2007 - 04:03:24 CST)
- AMBER: leap restrainTorsion fatima.chami_at_durham.ac.uk (Wed Dec 05 2007 - 04:24:30 CST)
- AMBER: calcium and zinc parameter Madjid Taghdir (Wed Dec 05 2007 - 05:07:17 CST)
- AMBER: THF parameters Yves Boulard (Wed Dec 05 2007 - 04:21:04 CST)
- AMBER: Amber 9 - bugfix.40 fails Kevin Davies (Wed Dec 05 2007 - 11:27:27 CST)
- AMBER: Bulk water simulation with centre of mass position restrain Biman Jana (Wed Dec 05 2007 - 12:08:56 CST)
- Fwd: Re: AMBER: leap restrainTorsion fatima.chami_at_durham.ac.uk (Wed Dec 05 2007 - 12:45:24 CST)
- AMBER: How to apply psuedo-bonds for restraints Seth Lilavivat (Wed Dec 05 2007 - 13:28:37 CST)
- AMBER: amber on AMD opteron-250 servaas michielssens (Wed Dec 05 2007 - 14:10:22 CST)
- AMBER: MD_model Urszula Uciechowska (Wed Dec 05 2007 - 17:05:45 CST)
- AMBER: Making movies in VMD Lili Peng (Wed Dec 05 2007 - 18:57:08 CST)
- AMBER: Problem in running CARNAL Vijay Manickam Achari (Thu Dec 06 2007 - 02:44:09 CST)
- AMBER: Problem in running CARNAL Vijay Manickam Achari (Thu Dec 06 2007 - 02:45:35 CST)
- AMBER: compilation error in SGI Altix 4700 with Intel Fortran 10.1.008 and IMKL 10.0.1.014 Ye Mei (Thu Dec 06 2007 - 06:20:56 CST)
- AMBER: pmend vs sander.MPI Francesco Pietra (Thu Dec 06 2007 - 09:13:39 CST)
- Re: AMBER: Problem in running CARNAL Bill Ross (Thu Dec 06 2007 - 13:37:07 CST)
- AMBER: Problem in running CARNAL Vijay Manickam Achari (Thu Dec 06 2007 - 23:52:26 CST)
- AMBER: Troubles installing amber Margaret Doll (Fri Dec 07 2007 - 13:47:26 CST)
- AMBER: ** No torsion terms for SNI-NI-SNI-CT Boutheina Kerkeni (Fri Dec 07 2007 - 16:13:19 CST)
- AMBER: ** No torsion terms for SNI-NI-SNI-CT Boutheina Kerkeni (Fri Dec 07 2007 - 16:17:07 CST)
- Re: AMBER: ** No torsion terms for SNI-NI-SNI-CT Bill Ross (Fri Dec 07 2007 - 16:20:49 CST)
- AMBER: running equilibration Boutheina Kerkeni (Fri Dec 07 2007 - 18:29:59 CST)
- Re: AMBER: running equilibration Bill Ross (Fri Dec 07 2007 - 19:11:02 CST)
- AMBER: Continuing an amber 8 simulation with amber 9 ming hui (Sat Dec 08 2007 - 01:03:55 CST)
- AMBER: protein_model Urszula Uciechowska (Sat Dec 08 2007 - 10:11:16 CST)
- AMBER: Backbone atoms Boutheina Kerkeni (Sat Dec 08 2007 - 16:42:20 CST)
- AMBER: website problems Sally Pias (Sat Dec 08 2007 - 23:06:16 CST)
- AMBER: ptraj with protein-ligand Francesco Pietra (Sun Dec 09 2007 - 04:11:30 CST)
- AMBER: Fwd: ptraj with protein-ligand Francesco Pietra (Sun Dec 09 2007 - 04:18:24 CST)
- AMBER: Troubling with installing Amber8 #NGUYEN CONG TRI# (Sun Dec 09 2007 - 06:06:18 CST)
- AMBER: some input problem Urszula Uciechowska (Sun Dec 09 2007 - 09:25:52 CST)
- AMBER: Re: Amber_ifort_x86_64 test error Ilya Chorny (Sun Dec 09 2007 - 10:46:32 CST)
- AMBER: TI Approach - mass perturbation Ilyas Yildirim (Mon Dec 10 2007 - 12:20:49 CST)
- AMBER: Ligand-Residue interaction tracking Evan Kelly (Mon Dec 10 2007 - 12:20:29 CST)
- AMBER: implicit solvent simulations with calcium ion Akansha Saxena (Mon Dec 10 2007 - 15:19:01 CST)
- AMBER: implicit solvent simulations WANG,YING (Tue Dec 11 2007 - 13:21:11 CST)
- AMBER: tleap crashing Ranjib Dey (Tue Dec 11 2007 - 13:12:20 CST)
- AMBER: amber 9 sander crashed with "forrtl: severe (174): SIGSEGV, segmentation fault occurred" Shuzhi Wang (Tue Dec 11 2007 - 15:07:25 CST)
- AMBER: equilibration Urszula Uciechowska (Wed Dec 12 2007 - 11:08:00 CST)
- AMBER: Free Energy Calculations Mike Wykes (Wed Dec 12 2007 - 12:08:20 CST)
- AMBER: New 2 the board Campbell, Patrick (Wed Dec 12 2007 - 15:12:30 CST)
- AMBER: make test.parallel not complete Prem Prakash Pathak (Thu Dec 13 2007 - 02:10:16 CST)
- AMBER: MMPBSA Syed Tarique Moin (Thu Dec 13 2007 - 06:34:21 CST)
- AMBER: protein-ligand binding affinity Francesco Pietra (Thu Dec 13 2007 - 08:00:17 CST)
- AMBER: help in QM/MM simulation Pankaj R. Daga (Thu Dec 13 2007 - 15:02:17 CST)
- AMBER: PMEMD internals !! Sampath Koppole (Fri Dec 14 2007 - 03:13:49 CST)
- AMBER: replica exchange out files continually overwritten David Mobley (Fri Dec 14 2007 - 11:02:41 CST)
- AMBER: Time step & non-bonded interactions updating Francesco Pietra (Sat Dec 15 2007 - 12:39:48 CST)
- RE: AMBER: Time step & non-bonded interactions updating Ross Walker (Sat Dec 15 2007 - 19:32:08 CST)
- RE: AMBER: Time step & non-bonded interactions updating Francesco Pietra (Sun Dec 16 2007 - 10:36:46 CST)
- AMBER: pmemd: same rst, different result? Anselm Horn (Mon Dec 17 2007 - 03:54:20 CST)
- Re: AMBER: pmemd: same rst, different result? Benjamin Juhl (Mon Dec 17 2007 - 04:25:04 CST)
- Re: AMBER: pmemd: same rst, different result? Robert Duke (Mon Dec 17 2007 - 09:29:15 CST)
- Re: AMBER: pmemd: same rst, different result? Anselm Horn (Tue Dec 18 2007 - 03:10:20 CST)
- Re: AMBER: pmemd: same rst, different result? Robert Duke (Tue Dec 18 2007 - 07:51:04 CST)
- Re: AMBER: pmemd: same rst, different result? David A. Case (Tue Dec 18 2007 - 09:46:56 CST)
- RE: AMBER: pmemd: same rst, different result? Yong Duan (Tue Dec 18 2007 - 11:47:31 CST)
- Re: AMBER: pmemd: same rst, different result? Robert Duke (Tue Dec 18 2007 - 20:26:34 CST)
- Re: AMBER: pmemd: same rst, different result? Thomas Cheatham (Wed Dec 19 2007 - 00:39:50 CST)
- Re: AMBER: pmemd: same rst, different result? Robert Duke (Wed Dec 19 2007 - 08:12:56 CST)
- AMBER: MMTSB Toolset Urszula Uciechowska (Mon Dec 17 2007 - 06:19:34 CST)
- AMBER: amber9/mmtsb Francesco Pietra (Tue Dec 18 2007 - 04:21:31 CST)
- AMBER: Scripts for md analysis Francesco Pietra (Tue Dec 18 2007 - 05:05:24 CST)
- AMBER: PME and counter ions Lars Skjærven (Tue Dec 18 2007 - 10:04:12 CST)
- Re: AMBER: PME and counter ions Bill Ross (Tue Dec 18 2007 - 12:36:38 CST)
- AMBER: closest water molecules with 8 angstroms nag raj (Wed Dec 19 2007 - 00:52:45 CST)
- AMBER: Electron density profile Age.Skjevik_at_student.uib.no (Thu Dec 20 2007 - 06:13:56 CST)
- AMBER: Use of Counter Ions in binding energy calculations Jonathan Suever (Thu Dec 20 2007 - 12:42:15 CST)
- AMBER: Steered MD M kutty (Fri Dec 21 2007 - 00:03:29 CST)
- AMBER: No radius found for K+ (MM_PBSA) saurabh agrawal (Fri Dec 21 2007 - 08:45:01 CST)
- AMBER: About protein-ligand binding Francesco Pietra (Fri Dec 21 2007 - 08:52:00 CST)
- AMBER: RESP using antechamber snoze pa (Sat Dec 22 2007 - 13:21:07 CST)
- AMBER: installation of amber9 on suse linux 10.3 s lal badshah (Sun Dec 23 2007 - 23:47:21 CST)
- AMBER: installation s lal badshah (Wed Dec 26 2007 - 23:11:29 CST)
- AMBER: RESP charge fitting using antechamber Wei Chen (Sat Dec 29 2007 - 13:22:16 CST)
- AMBER: About RAMD Francesco Pietra (Mon Dec 31 2007 - 09:27:36 CST)
- AMBER: a question of ptraj WANG,YING (Mon Dec 31 2007 - 13:39:03 CST)
Last message date: Mon Dec 31 2007 - 15:27:41 CST
Archived on: Thu Jan 10 2008 - 17:13:10 CST
257 messages sorted by:
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