AMBER Archive (2007)

Subject: AMBER: AMBER7 Si atom type

From: Taufik Al-Sarraj (taufik.alsarraj_at_utoronto.ca)
Date: Wed Dec 12 2007 - 11:30:49 CST

Hello,
I want to model DNA on Si surface (it will be fixed during the
minimization and dynamics) but i don't know the atom type for Silicone.
Since it (the surface) will be restrained can i simply use Si. would i
add that in xleap using the steps outlined in tutorial 4. or can i
update leaprc.ff99?

i am using Amber 7

Best wishes,
Taufik

Chemical Sensors Group
University of Toronto, Mississauga
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