AMBER Archive (2007)

Subject: AMBER: MMPBSA

From: Syed Tarique Moin (tarisyed_at_yahoo.com)
Date: Thu Dec 13 2007 - 06:34:21 CST


Dear Amber users

I am about to calculate binding affinity of complex
using mmpbsa implemented in amber9. I practised the
tutorial regarding mmpbsa.....I want to know that
whether only comlex will solvated and simulated or
protein and ligand alone also as given in tutorial.
Kindly assist me in this regard.

Regards.........

Tarique

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