AMBER Archive (2007) - Dec 2007 By DateMost recent messages
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Starting: Sat Dec 01 2007 - 09:46:23 CST
Ending: Mon Dec 31 2007 - 14:38:21 CST
- AMBER: Minimization amber9 segmentation fault Francesco Pietra (Sat Dec 01 2007 - 09:46:23 CST)
- Re: AMBER: Minimization amber9 segmentation fault Adrian Roitberg (Sat Dec 01 2007 - 10:17:15 CST)
- Re: AMBER: Minimization amber9 segmentation fault Francesco Pietra (Sat Dec 01 2007 - 12:48:01 CST)
- Re: AMBER: Minimization amber9 segmentation fault Adrian Roitberg (Sat Dec 01 2007 - 13:44:16 CST)
- Re: AMBER: Minimization amber9 segmentation fault Francesco Pietra (Sun Dec 02 2007 - 03:51:42 CST)
- AMBER: mm_pbsa continue run Christopher Gaughan (Sun Dec 02 2007 - 12:46:42 CST)
- AMBER: I need some help in PTRAJ Vijay Manickam Achari (Mon Dec 03 2007 - 00:49:29 CST)
- Re: AMBER: angle between vectors Mag. rer. nat. Hannes Wallnöfer (Mon Dec 03 2007 - 01:55:51 CST)
- AMBER: sander and pmemd Nadia Vahdati (Mon Dec 03 2007 - 07:20:17 CST)
- Re: AMBER: sander and pmemd Robert Duke (Mon Dec 03 2007 - 08:19:24 CST)
- Fwd: Re: AMBER: Minimization amber9 segmentation fault Francesco Pietra (Mon Dec 03 2007 - 10:30:11 CST)
- AMBER: Re: divcon on AIX using xlf 10.1 Joachim Hein (Mon Dec 03 2007 - 10:43:19 CST)
- Re: Fwd: Re: AMBER: Minimization amber9 segmentation fault David A. Case (Mon Dec 03 2007 - 11:08:48 CST)
- AMBER: Free energy for part of the system jialei (Mon Dec 03 2007 - 13:12:47 CST)
- Re: Fwd: Re: AMBER: Minimization amber9 segmentation fault Francesco Pietra (Mon Dec 03 2007 - 15:45:14 CST)
- Re: Fwd: Re: AMBER: Minimization amber9 segmentation fault Francesco Pietra (Mon Dec 03 2007 - 16:18:01 CST)
- Re: Fwd: Re: AMBER: Minimization amber9 segmentation fault Ilyas Yildirim (Mon Dec 03 2007 - 16:42:54 CST)
- Re: AMBER: I need some help in PTRAJ Chris Moth (Mon Dec 03 2007 - 19:29:21 CST)
- AMBER: During the Sander process, does the pH of the solution change orr not Fenghui Fan (Mon Dec 03 2007 - 19:58:44 CST)
- Re: AMBER: Free energy for part of the system David A. Case (Mon Dec 03 2007 - 20:35:50 CST)
- AMBER: Restraintmask syntax Francesco Pietra (Tue Dec 04 2007 - 09:30:50 CST)
- RE: AMBER: Restraintmask syntax Steve Spronk (Tue Dec 04 2007 - 10:49:36 CST)
- AMBER: Solution Structure Determination Protocols - Simulated Annealing Seth Lilavivat (Tue Dec 04 2007 - 11:23:16 CST)
- RE: AMBER: Restraintmask syntax Francesco Pietra (Tue Dec 04 2007 - 11:44:01 CST)
- AMBER: correlation time Tuncel, Aytug (Tue Dec 04 2007 - 12:22:55 CST)
- RE: AMBER: Free energy for part of the system jialei (Tue Dec 04 2007 - 12:21:03 CST)
- Re: AMBER: Free energy for part of the system David A. Case (Tue Dec 04 2007 - 12:37:16 CST)
- Re: AMBER: correlation time David A. Case (Tue Dec 04 2007 - 12:40:20 CST)
- Re: AMBER: modifications to force field for Fe4S4 cubane David A. Case (Tue Dec 04 2007 - 12:57:39 CST)
- Re: AMBER: angle between vectors Prem (Tue Dec 04 2007 - 15:59:29 CST)
- AMBER: POPS Lipid Bilayer: Full Parameter/Topology File Lalit Dubey (Tue Dec 04 2007 - 18:39:29 CST)
- RE: AMBER: Free energy for part of the system jialei (Tue Dec 04 2007 - 19:10:18 CST)
- Re: AMBER: POPS Lipid Bilayer: Full Parameter/Topology File David A. Case (Tue Dec 04 2007 - 19:11:53 CST)
- AMBER: phosphorylation bosco (Tue Dec 04 2007 - 19:36:27 CST)
- AMBER: (no subject) Madjid Taghdir (Wed Dec 05 2007 - 03:18:11 CST)
- AMBER: nmode ntrun=2 JM Beames (Wed Dec 05 2007 - 04:03:24 CST)
- AMBER: leap restrainTorsion fatima.chami_at_durham.ac.uk (Wed Dec 05 2007 - 04:24:30 CST)
- RE: AMBER: Restraintmask syntax Andrew Purkiss-Trew (Wed Dec 05 2007 - 04:39:08 CST)
- AMBER: calcium and zinc parameter Madjid Taghdir (Wed Dec 05 2007 - 05:07:17 CST)
- Re: AMBER: calcium and zinc parameter Mattia Mori - CERM (Wed Dec 05 2007 - 05:15:08 CST)
- AMBER: THF parameters Yves Boulard (Wed Dec 05 2007 - 04:21:04 CST)
- Re: AMBER: THF parameters FyD (Wed Dec 05 2007 - 08:32:27 CST)
- Re: AMBER: leap restrainTorsion David A. Case (Wed Dec 05 2007 - 10:50:12 CST)
- AMBER: Amber 9 - bugfix.40 fails Kevin Davies (Wed Dec 05 2007 - 11:27:27 CST)
- Re: AMBER: nmode ntrun=2 David A. Case (Wed Dec 05 2007 - 11:58:34 CST)
- Re: AMBER: Amber 9 - bugfix.40 fails Holger Gohlke (Wed Dec 05 2007 - 11:56:23 CST)
- Re: AMBER: THF parameters David A. Case (Wed Dec 05 2007 - 11:56:18 CST)
- AMBER: Bulk water simulation with centre of mass position restrain Biman Jana (Wed Dec 05 2007 - 12:08:56 CST)
- RE: AMBER: Restraintmask syntax Francesco Pietra (Wed Dec 05 2007 - 12:00:49 CST)
- Re: AMBER: calcium and zinc parameter Taufik Al-Sarraj (Wed Dec 05 2007 - 12:43:45 CST)
- Fwd: Re: AMBER: leap restrainTorsion fatima.chami_at_durham.ac.uk (Wed Dec 05 2007 - 12:45:24 CST)
- AMBER: How to apply psuedo-bonds for restraints Seth Lilavivat (Wed Dec 05 2007 - 13:28:37 CST)
- Re: AMBER: THF parameters Piotr Cieplak (Wed Dec 05 2007 - 13:33:42 CST)
- AMBER: amber on AMD opteron-250 servaas michielssens (Wed Dec 05 2007 - 14:10:22 CST)
- Re: AMBER: amber on AMD opteron-250 Robert Duke (Wed Dec 05 2007 - 14:35:04 CST)
- Re: AMBER: amber on AMD opteron-250 David LeBard (Wed Dec 05 2007 - 14:29:22 CST)
- Re: AMBER: THF parameters FyD (Wed Dec 05 2007 - 14:42:29 CST)
- Re: AMBER: amber on AMD opteron-250 Robert Duke (Wed Dec 05 2007 - 15:31:28 CST)
- AMBER: MD_model Urszula Uciechowska (Wed Dec 05 2007 - 17:05:45 CST)
- Re: AMBER: MD_model Thomas Steinbrecher (Wed Dec 05 2007 - 17:26:04 CST)
- AMBER: FATAL: Atom .R<CYF 17>.A<N 1> does not have a type. Boutheina Kerkeni (Wed Dec 05 2007 - 17:28:41 CST)
- Re: AMBER: MD_model Ilyas Yildirim (Wed Dec 05 2007 - 17:54:50 CST)
- Re: AMBER: FATAL: Atom .R<CYF 17>.A<N 1> does not have a type. David A. Case (Wed Dec 05 2007 - 18:41:32 CST)
- AMBER: Making movies in VMD Lili Peng (Wed Dec 05 2007 - 18:57:08 CST)
- Re: AMBER: Making movies in VMD Vijay Singh (Wed Dec 05 2007 - 19:25:26 CST)
- Re: Fwd: Re: AMBER: leap restrainTorsion David A. Case (Wed Dec 05 2007 - 20:15:36 CST)
- Re: AMBER: How to apply psuedo-bonds for restraints David A. Case (Wed Dec 05 2007 - 20:16:43 CST)
- Re: AMBER: Making movies in VMD rdauria_at_uci.edu (Wed Dec 05 2007 - 23:20:12 CST)
- AMBER: Problem in running CARNAL Vijay Manickam Achari (Thu Dec 06 2007 - 02:44:09 CST)
- AMBER: Problem in running CARNAL Vijay Manickam Achari (Thu Dec 06 2007 - 02:45:35 CST)
- RE: AMBER: correlation time Tuncel, Aytug (Thu Dec 06 2007 - 03:44:29 CST)
- Re: AMBER: nmode ntrun=2 JM Beames (Thu Dec 06 2007 - 05:48:43 CST)
- AMBER: compilation error in SGI Altix 4700 with Intel Fortran 10.1.008 and IMKL 10.0.1.014 Ye Mei (Thu Dec 06 2007 - 06:20:56 CST)
- Re: AMBER: calcium and zinc parameter Mattia Mori - CERM (Thu Dec 06 2007 - 07:21:10 CST)
- AMBER: PMEMD compilation problems !! Sampath Koppole (Thu Dec 06 2007 - 08:42:06 CST)
- Re: AMBER: PMEMD compilation problems !! Robert Duke (Thu Dec 06 2007 - 08:56:04 CST)
- AMBER: pmend vs sander.MPI Francesco Pietra (Thu Dec 06 2007 - 09:13:39 CST)
- Re: AMBER: PMEMD compilation problems !! Robert Duke (Thu Dec 06 2007 - 09:07:21 CST)
- Re: AMBER: compilation error in SGI Altix 4700 with Intel Fortran 10.1.008 and IMKL 10.0.1.014 Andreas Svrcek-Seiler (Thu Dec 06 2007 - 09:49:34 CST)
- Re: AMBER: pmend vs sander.MPI Robert Duke (Thu Dec 06 2007 - 09:18:20 CST)
- Re: AMBER: How to apply psuedo-bonds for restraints Seth Lilavivat (Thu Dec 06 2007 - 10:08:55 CST)
- Re: AMBER: How to apply psuedo-bonds for restraints David A. Case (Thu Dec 06 2007 - 10:56:59 CST)
- Re: AMBER: nmode ntrun=2 David A. Case (Thu Dec 06 2007 - 11:06:01 CST)
- Re: AMBER: correlation time David A. Case (Thu Dec 06 2007 - 11:09:07 CST)
- AMBER: Surface Taufik Al-Sarraj (Thu Dec 06 2007 - 13:11:21 CST)
- Re: AMBER: Problem in running CARNAL Bill Ross (Thu Dec 06 2007 - 13:37:07 CST)
- Re: AMBER: phosphorylation FyD (Thu Dec 06 2007 - 14:07:57 CST)
- Re: AMBER: Surface David A. Case (Thu Dec 06 2007 - 15:34:04 CST)
- Re: Re: AMBER: compilation error in SGI Altix 4700 with Intel Fortran10.1.008 and IMKL 10.0.1.014 Ye Mei (Thu Dec 06 2007 - 21:23:11 CST)
- AMBER: Problem in running CARNAL Vijay Manickam Achari (Thu Dec 06 2007 - 23:52:26 CST)
- Re: AMBER: POPS Lipid Bilayer: Full Parameter/Topology File Lalit Dubey (Fri Dec 07 2007 - 00:45:59 CST)
- Re: AMBER: Problem in running CARNAL Bill Ross (Fri Dec 07 2007 - 11:48:15 CST)
- AMBER: Troubles installing amber Margaret Doll (Fri Dec 07 2007 - 13:47:26 CST)
- Re: AMBER: Troubles installing amber Wei Zhang (Fri Dec 07 2007 - 13:54:47 CST)
- Re: AMBER: Troubles installing amber Alessandro Nascimento (Fri Dec 07 2007 - 13:55:54 CST)
- Re: AMBER: Troubles installing amber Margaret Doll (Fri Dec 07 2007 - 15:36:36 CST)
- AMBER: ** No torsion terms for SNI-NI-SNI-CT Boutheina Kerkeni (Fri Dec 07 2007 - 16:13:19 CST)
- AMBER: ** No torsion terms for SNI-NI-SNI-CT Boutheina Kerkeni (Fri Dec 07 2007 - 16:17:07 CST)
- Re: AMBER: Troubles installing amber David A. Case (Fri Dec 07 2007 - 16:15:36 CST)
- Re: AMBER: ** No torsion terms for SNI-NI-SNI-CT Bill Ross (Fri Dec 07 2007 - 16:20:49 CST)
- Re: AMBER: Troubles installing amber Margaret Doll (Fri Dec 07 2007 - 16:22:22 CST)
- AMBER: running equilibration Boutheina Kerkeni (Fri Dec 07 2007 - 18:29:59 CST)
- RE: AMBER: running equilibration Ross Walker (Fri Dec 07 2007 - 19:00:15 CST)
- Re: AMBER: running equilibration Bill Ross (Fri Dec 07 2007 - 19:11:02 CST)
- Re: AMBER: ** No torsion terms for SNI-NI-SNI-CT David A. Case (Fri Dec 07 2007 - 19:24:30 CST)
- AMBER: Continuing an amber 8 simulation with amber 9 ming hui (Sat Dec 08 2007 - 01:03:55 CST)
- AMBER: protein_model Urszula Uciechowska (Sat Dec 08 2007 - 10:11:16 CST)
- Re: AMBER: Continuing an amber 8 simulation with amber 9 David A. Case (Sat Dec 08 2007 - 12:40:09 CST)
- Re: AMBER: protein_model steinbrt_at_scripps.edu (Sat Dec 08 2007 - 12:51:35 CST)
- AMBER: Backbone atoms Boutheina Kerkeni (Sat Dec 08 2007 - 16:42:20 CST)
- Re: AMBER: Backbone atoms David A. Case (Sat Dec 08 2007 - 16:58:30 CST)
- AMBER: website problems Sally Pias (Sat Dec 08 2007 - 23:06:16 CST)
- AMBER: ptraj with protein-ligand Francesco Pietra (Sun Dec 09 2007 - 04:11:30 CST)
- AMBER: Fwd: ptraj with protein-ligand Francesco Pietra (Sun Dec 09 2007 - 04:18:24 CST)
- AMBER: Troubling with installing Amber8 #NGUYEN CONG TRI# (Sun Dec 09 2007 - 06:06:18 CST)
- AMBER: some input problem Urszula Uciechowska (Sun Dec 09 2007 - 09:25:52 CST)
- AMBER: Re: Amber_ifort_x86_64 test error Ilya Chorny (Sun Dec 09 2007 - 10:46:32 CST)
- Re: AMBER: website problems David A. Case (Sun Dec 09 2007 - 11:03:47 CST)
- Re: AMBER: some input problem David A. Case (Sun Dec 09 2007 - 11:09:51 CST)
- Re: AMBER: Re: Amber_ifort_x86_64 test error David A. Case (Sun Dec 09 2007 - 11:13:00 CST)
- Re: AMBER: Troubling with installing Amber8 David A. Case (Sun Dec 09 2007 - 11:18:29 CST)
- Re: AMBER: Re: Amber_ifort_x86_64 test error Ilya Chorny (Sun Dec 09 2007 - 11:22:17 CST)
- Re: AMBER: website problems Andreas Svrcek-Seiler (Sun Dec 09 2007 - 11:25:12 CST)
- Re: AMBER: pmend vs sander.MPI Francesco Pietra (Sun Dec 09 2007 - 11:35:48 CST)
- RE: AMBER: website problems Ross Walker (Sun Dec 09 2007 - 11:52:42 CST)
- RE: AMBER: Re: Amber_ifort_x86_64 test error Ross Walker (Sun Dec 09 2007 - 12:01:57 CST)
- Re: AMBER: Re: Amber_ifort_x86_64 test error Ilya Chorny (Sun Dec 09 2007 - 12:11:52 CST)
- Re: AMBER: Re: Amber_ifort_x86_64 test error Ilya Chorny (Sun Dec 09 2007 - 12:12:57 CST)
- Re: AMBER: website problems Sally Pias (Sun Dec 09 2007 - 12:45:51 CST)
- RE: AMBER: Re: Amber_ifort_x86_64 test error Ross Walker (Sun Dec 09 2007 - 12:57:55 CST)
- RE: AMBER: website problems Ross Walker (Sun Dec 09 2007 - 13:06:00 CST)
- RE: AMBER: Re: Amber_ifort_x86_64 test error Ross Walker (Sun Dec 09 2007 - 13:54:44 CST)
- Re: AMBER: Installing Amber9 in a Cygwin environment on a MS-Windows XP machine Hopkins, Robert (Sun Dec 09 2007 - 15:44:34 CST)
- RE: AMBER: Re: Amber_ifort_x86_64 test error Ilyas Yildirim (Sun Dec 09 2007 - 15:56:09 CST)
- Re: AMBER: Re: Amber_ifort_x86_64 test error Ilya Chorny (Sun Dec 09 2007 - 20:42:45 CST)
- AMBER: TI Approach - mass perturbation Ilyas Yildirim (Mon Dec 10 2007 - 12:20:49 CST)
- AMBER: Ligand-Residue interaction tracking Evan Kelly (Mon Dec 10 2007 - 12:20:29 CST)
- AMBER: implicit solvent simulations with calcium ion Akansha Saxena (Mon Dec 10 2007 - 15:19:01 CST)
- Re: AMBER: TI Approach - mass perturbation David A. Case (Tue Dec 11 2007 - 01:13:08 CST)
- Re: AMBER: calcium and zinc parameter Madjid Taghdir (Tue Dec 11 2007 - 01:21:37 CST)
- Re: AMBER: TI Approach - mass perturbation Ilyas Yildirim (Tue Dec 11 2007 - 01:47:52 CST)
- Re: AMBER: amber on AMD opteron-250 servaas michielssens (Tue Dec 11 2007 - 03:35:08 CST)
- Re: AMBER: calcium and zinc parameter Mattia Mori - CERM (Tue Dec 11 2007 - 07:07:31 CST)
- RE: AMBER: amber on AMD opteron-250 Ross Walker (Tue Dec 11 2007 - 09:52:07 CST)
- AMBER: implicit solvent simulations WANG,YING (Tue Dec 11 2007 - 13:21:11 CST)
- AMBER: tleap crashing Ranjib Dey (Tue Dec 11 2007 - 13:12:20 CST)
- RE: AMBER: amber on AMD opteron-250 servaas michielssens (Tue Dec 11 2007 - 14:27:20 CST)
- AMBER: amber 9 sander crashed with "forrtl: severe (174): SIGSEGV, segmentation fault occurred" Shuzhi Wang (Tue Dec 11 2007 - 15:07:25 CST)
- RE: AMBER: amber on AMD opteron-250 Ross Walker (Tue Dec 11 2007 - 15:20:11 CST)
- RE: AMBER: amber 9 sander crashed with "forrtl: severe (174): SIGSEGV, segmentation fault occurred" Ross Walker (Tue Dec 11 2007 - 15:32:43 CST)
- RE: AMBER: amber on AMD opteron-250 Christopher Jones (Tue Dec 11 2007 - 16:08:31 CST)
- Re: AMBER: tleap crashing David A. Case (Tue Dec 11 2007 - 17:04:25 CST)
- Re: AMBER: Installing Amber9 in a Cygwin environment on a MS-Windows XP machine Hopkins, Robert (Tue Dec 11 2007 - 17:50:17 CST)
- Re: AMBER: Installing Amber9 in a Cygwin environment on a MS-Windows XP machine Gustavo Seabra (Tue Dec 11 2007 - 18:23:49 CST)
- Re: AMBER: implicit solvent simulations liu junjun (Tue Dec 11 2007 - 21:49:57 CST)
- Re: AMBER: implicit solvent simulations WANG,YING (Tue Dec 11 2007 - 22:00:59 CST)
- Re: AMBER: tleap crashing Ranjib Dey (Wed Dec 12 2007 - 01:04:55 CST)
- RE: AMBER: implicit solvent simulations Steve Spronk (Wed Dec 12 2007 - 07:00:01 CST)
- AMBER: equilibration Urszula Uciechowska (Wed Dec 12 2007 - 11:08:00 CST)
- AMBER: AMBER7 Si atom type Taufik Al-Sarraj (Wed Dec 12 2007 - 11:30:49 CST)
- AMBER: Free Energy Calculations Mike Wykes (Wed Dec 12 2007 - 12:08:20 CST)
- Re: AMBER: Free Energy Calculations Thomas Steinbrecher (Wed Dec 12 2007 - 13:19:55 CST)
- AMBER: New 2 the board Campbell, Patrick (Wed Dec 12 2007 - 15:12:30 CST)
- Re: AMBER: New 2 the board David A. Case (Wed Dec 12 2007 - 18:03:46 CST)
- AMBER: loading a crystal PDB file Taufik Al-Sarraj (Wed Dec 12 2007 - 19:33:36 CST)
- AMBER: make test.parallel not complete Prem Prakash Pathak (Thu Dec 13 2007 - 02:10:16 CST)
- AMBER: MMPBSA Syed Tarique Moin (Thu Dec 13 2007 - 06:34:21 CST)
- AMBER: protein-ligand binding affinity Francesco Pietra (Thu Dec 13 2007 - 08:00:17 CST)
- RE: AMBER: make test.parallel not complete Ross Walker (Thu Dec 13 2007 - 08:19:42 CST)
- Re: AMBER: nmode ntrun=2 JM Beames (Thu Dec 13 2007 - 09:29:54 CST)
- RE: AMBER: Troubling with installing Amber8 #NGUYEN CONG TRI# (Thu Dec 13 2007 - 08:19:47 CST)
- AMBER: help in QM/MM simulation Pankaj R. Daga (Thu Dec 13 2007 - 15:02:17 CST)
- AMBER: PMEMD internals !! Sampath Koppole (Fri Dec 14 2007 - 03:13:49 CST)
- Re: AMBER: PMEMD internals !! Robert Duke (Fri Dec 14 2007 - 07:41:43 CST)
- Re: AMBER: Troubling with installing Amber8 David A. Case (Fri Dec 14 2007 - 10:39:58 CST)
- AMBER: replica exchange out files continually overwritten David Mobley (Fri Dec 14 2007 - 11:02:41 CST)
- Re: AMBER: replica exchange out files continually overwritten David A. Case (Fri Dec 14 2007 - 11:17:09 CST)
- Re: AMBER: nmode ntrun=2 David A. Case (Fri Dec 14 2007 - 12:27:44 CST)
- Re: AMBER: replica exchange out files continually overwritten Adrian Roitberg (Fri Dec 14 2007 - 12:33:23 CST)
- Re: AMBER: replica exchange out files continually overwritten David Mobley (Fri Dec 14 2007 - 12:47:27 CST)
- Re: AMBER: replica exchange out files continually overwritten Carlos Simmerling (Fri Dec 14 2007 - 12:58:36 CST)
- Re: AMBER: replica exchange out files continually overwritten David Mobley (Fri Dec 14 2007 - 13:18:21 CST)
- Re: AMBER: replica exchange out files continually overwritten Carlos Simmerling (Fri Dec 14 2007 - 15:11:37 CST)
- AMBER: xleap loading files Taufik Al-Sarraj (Fri Dec 14 2007 - 16:20:08 CST)
- Re: AMBER: replica exchange out files continually overwritten David Mobley (Fri Dec 14 2007 - 17:04:50 CST)
- Re: AMBER: xleap loading files David A. Case (Sat Dec 15 2007 - 00:26:13 CST)
- Re: AMBER: xleap loading files FyD (Sat Dec 15 2007 - 07:04:46 CST)
- AMBER: Time step & non-bonded interactions updating Francesco Pietra (Sat Dec 15 2007 - 12:39:48 CST)
- RE: AMBER: Time step & non-bonded interactions updating Ross Walker (Sat Dec 15 2007 - 19:32:08 CST)
- RE: AMBER: Time step & non-bonded interactions updating Francesco Pietra (Sun Dec 16 2007 - 10:36:46 CST)
- AMBER: pmemd: same rst, different result? Anselm Horn (Mon Dec 17 2007 - 03:54:20 CST)
- Re: AMBER: pmemd: same rst, different result? Benjamin Juhl (Mon Dec 17 2007 - 04:25:04 CST)
- AMBER: MMTSB Toolset Urszula Uciechowska (Mon Dec 17 2007 - 06:19:34 CST)
- Re: AMBER: MMTSB Toolset Carlos Simmerling (Mon Dec 17 2007 - 06:26:27 CST)
- Re: AMBER: pmemd: same rst, different result? Robert Duke (Mon Dec 17 2007 - 09:29:15 CST)
- Re: AMBER: amber 9 sander crashed with "forrtl: severe (174): SIGSEGV, segmentation fault occurred" Shuzhi Wang (Mon Dec 17 2007 - 16:49:57 CST)
- RE: AMBER: amber 9 sander crashed with "forrtl: severe (174): SIGSEGV, segmentation fault occurred" Ross Walker (Mon Dec 17 2007 - 17:20:23 CST)
- Re: AMBER: pmemd: same rst, different result? Anselm Horn (Tue Dec 18 2007 - 03:10:20 CST)
- AMBER: amber9/mmtsb Francesco Pietra (Tue Dec 18 2007 - 04:21:31 CST)
- AMBER: Scripts for md analysis Francesco Pietra (Tue Dec 18 2007 - 05:05:24 CST)
- Re: AMBER: pmemd: same rst, different result? Robert Duke (Tue Dec 18 2007 - 07:51:04 CST)
- Re: AMBER: pmemd: same rst, different result? David A. Case (Tue Dec 18 2007 - 09:46:56 CST)
- Re: AMBER: amber9/mmtsb David A. Case (Tue Dec 18 2007 - 09:59:11 CST)
- AMBER: PME and counter ions Lars Skjærven (Tue Dec 18 2007 - 10:04:12 CST)
- Re: AMBER: amber9/mmtsb Francesco Pietra (Tue Dec 18 2007 - 11:15:55 CST)
- RE: AMBER: pmemd: same rst, different result? Yong Duan (Tue Dec 18 2007 - 11:47:31 CST)
- Re: AMBER: PME and counter ions Bill Ross (Tue Dec 18 2007 - 12:36:38 CST)
- Re: AMBER: pmemd: same rst, different result? Robert Duke (Tue Dec 18 2007 - 20:26:34 CST)
- Re: AMBER: PME and counter ions Lars Skjærven (Tue Dec 18 2007 - 20:34:26 CST)
- Re: AMBER: pmemd: same rst, different result? Thomas Cheatham (Wed Dec 19 2007 - 00:39:50 CST)
- AMBER: closest water molecules with 8 angstroms nag raj (Wed Dec 19 2007 - 00:52:45 CST)
- Re: AMBER: closest water molecules with 8 angstroms Alessandro Nascimento (Wed Dec 19 2007 - 04:49:56 CST)
- Re: AMBER: pmemd: same rst, different result? Robert Duke (Wed Dec 19 2007 - 08:12:56 CST)
- Re: AMBER: help in QM/MM simulation Gustavo Seabra (Wed Dec 19 2007 - 08:42:19 CST)
- Re: AMBER: amber9/mmtsb David A. Case (Wed Dec 19 2007 - 10:19:47 CST)
- Re: AMBER: PME and counter ions Pablo Englebienne (Wed Dec 19 2007 - 13:05:30 CST)
- Re: AMBER: PME and counter ions David A. Case (Wed Dec 19 2007 - 14:01:55 CST)
- Re: AMBER: PME and counter ions Bill Ross (Wed Dec 19 2007 - 14:14:19 CST)
- Re: AMBER: PME and counter ions Eddie Men (Wed Dec 19 2007 - 15:40:24 CST)
- AMBER: PME and counter ions Chris Moth (Wed Dec 19 2007 - 18:21:46 CST)
- Re: AMBER: PME and counter ions David A. Case (Wed Dec 19 2007 - 19:01:00 CST)
- Re: AMBER: PME and counter ions Lars Skjærven (Wed Dec 19 2007 - 19:52:11 CST)
- Re: AMBER: PME and counter ions David A. Case (Wed Dec 19 2007 - 20:41:30 CST)
- Re: AMBER: PME and counter ions Thomas Cheatham (Thu Dec 20 2007 - 00:05:41 CST)
- Re: AMBER: make test.parallel not complete Prem Prakash Pathak (Thu Dec 20 2007 - 03:59:03 CST)
- AMBER: Electron density profile Age.Skjevik_at_student.uib.no (Thu Dec 20 2007 - 06:13:56 CST)
- Re: AMBER: PME and counter ions Lars Skjærven (Thu Dec 20 2007 - 09:12:53 CST)
- AMBER: Use of Counter Ions in binding energy calculations Jonathan Suever (Thu Dec 20 2007 - 12:42:15 CST)
- Re: AMBER: PME and counter ions Bill Ross (Thu Dec 20 2007 - 16:25:15 CST)
- Re: AMBER: PME and counter ions Bill Ross (Thu Dec 20 2007 - 16:29:37 CST)
- AMBER: Steered MD M kutty (Fri Dec 21 2007 - 00:03:29 CST)
- AMBER: No radius found for K+ (MM_PBSA) saurabh agrawal (Fri Dec 21 2007 - 08:45:01 CST)
- AMBER: About protein-ligand binding Francesco Pietra (Fri Dec 21 2007 - 08:52:00 CST)
- Re: AMBER: Steered MD M. L. Dodson (Fri Dec 21 2007 - 09:52:30 CST)
- Re: AMBER: Steered MD M. L. Dodson (Fri Dec 21 2007 - 10:00:58 CST)
- Re: AMBER: No radius found for K+ (MM_PBSA) Thomas Cheatham III (Fri Dec 21 2007 - 12:53:55 CST)
- Re: AMBER: PME and counter ions Thomas Cheatham III (Fri Dec 21 2007 - 16:19:03 CST)
- AMBER: RESP using antechamber snoze pa (Sat Dec 22 2007 - 13:21:07 CST)
- Re: AMBER: R.E.D.-III bug fixes snoze pa (Sat Dec 22 2007 - 13:14:44 CST)
- Re: AMBER: RESP using antechamber Barbault Florent (Sat Dec 22 2007 - 14:13:31 CST)
- RE: AMBER: Steered MD M kutty (Sun Dec 23 2007 - 23:04:41 CST)
- AMBER: installation of amber9 on suse linux 10.3 s lal badshah (Sun Dec 23 2007 - 23:47:21 CST)
- Re: AMBER: installation of amber9 on suse linux 10.3 David A. Case (Mon Dec 24 2007 - 00:03:38 CST)
- Re: AMBER: An enquiry about "Dynamics of ligand escape from the heme pocket of myoglobin (JACS, 1988, 110, 7690 David A. Case (Wed Dec 26 2007 - 11:52:20 CST)
- Re: AMBER: installation of amber9 on suse linux 10.3 s lal badshah (Wed Dec 26 2007 - 23:02:24 CST)
- AMBER: installation s lal badshah (Wed Dec 26 2007 - 23:11:29 CST)
- RE: AMBER: installation of amber9 on suse linux 10.3 Ross Walker (Thu Dec 27 2007 - 00:18:51 CST)
- Re: AMBER: installation Mark Williamson (Sat Dec 29 2007 - 11:23:15 CST)
- AMBER: RESP charge fitting using antechamber Wei Chen (Sat Dec 29 2007 - 13:22:16 CST)
- Re: AMBER: RESP charge fitting using antechamber David A. Case (Sat Dec 29 2007 - 20:05:25 CST)
- Re: AMBER: RESP charge fitting using antechamber FyD (Sun Dec 30 2007 - 08:54:59 CST)
- Re: AMBER: RESP charge fitting using antechamber Francesco Pietra (Mon Dec 31 2007 - 01:19:42 CST)
- Re: AMBER: RESP charge fitting using antechamber FyD (Mon Dec 31 2007 - 08:06:34 CST)
- AMBER: About RAMD Francesco Pietra (Mon Dec 31 2007 - 09:27:36 CST)
- Re: AMBER: RESP charge fitting using antechamber FyD (Mon Dec 31 2007 - 09:40:11 CST)
- AMBER: a question of ptraj WANG,YING (Mon Dec 31 2007 - 13:39:03 CST)
- Re: AMBER: a question of ptraj Chris Moth (Mon Dec 31 2007 - 14:38:21 CST)
Last message date: Mon Dec 31 2007 - 15:27:41 CST
Archived on: Thu Jan 10 2008 - 17:13:10 CST
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