AMBER Archive (2009) - Dec 2009 By DateMost recent messages
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Starting: Tue Dec 01 2009 - 02:30:07 CST
Ending: Thu Dec 31 2009 - 22:56:50 CST
- [AMBER] ptraj utility Neha Bharat Gajaria (Tue Dec 01 2009 - 02:30:07 CST)
- Re: [AMBER] Regarding rigid bond Carlos Simmerling (Tue Dec 01 2009 - 05:28:58 CST)
- Re: [AMBER] problem with FAD in tleap M. Shahid (Tue Dec 01 2009 - 05:54:04 CST)
- Re: [AMBER] trajout problem Daniel Roe (Tue Dec 01 2009 - 06:34:34 CST)
- Re: [AMBER] ptraj utility Daniel Roe (Tue Dec 01 2009 - 06:45:19 CST)
- Re: [AMBER] distance-dependent dielectric constant minimization case (Tue Dec 01 2009 - 06:48:32 CST)
- Re: [AMBER] ptraj utility Carlos Simmerling (Tue Dec 01 2009 - 06:48:27 CST)
- Re: [AMBER] Regarding rigid bond case (Tue Dec 01 2009 - 06:50:15 CST)
- Re: [AMBER] Regarding rigid bond Carlos Simmerling (Tue Dec 01 2009 - 06:55:17 CST)
- Re: [AMBER] ptraj utility case (Tue Dec 01 2009 - 06:56:52 CST)
- Re: [AMBER] distance-dependent dielectric constant minimization Robert Duke (Tue Dec 01 2009 - 07:06:40 CST)
- RE: [AMBER] trajout problem Anna Reymer (Tue Dec 01 2009 - 07:23:22 CST)
- RE: [AMBER] trouble with antechamber Jennifer L. Muzyka (Tue Dec 01 2009 - 09:10:40 CST)
- Re: [AMBER] Regarding rigid bond Bill Ross (Tue Dec 01 2009 - 11:37:27 CST)
- Re: [AMBER] Regarding rigid bond Adrian Roitberg (Tue Dec 01 2009 - 11:40:30 CST)
- Re: [AMBER] Regarding rigid bond Bill Ross (Tue Dec 01 2009 - 11:41:44 CST)
- Re: [AMBER] Output Does Not Match in Tutorial B1 Wallace Kunin (Tue Dec 01 2009 - 12:00:48 CST)
- Re: [AMBER] Output Does Not Match in Tutorial B1 Wallace Kunin (Tue Dec 01 2009 - 12:41:08 CST)
- [AMBER] XLEaP Error on Closing Edit Wallace Kunin (Tue Dec 01 2009 - 12:43:27 CST)
- RE: [AMBER] XLEaP Error on Closing Edit Ross Walker (Tue Dec 01 2009 - 13:02:58 CST)
- Re: [AMBER] SGLD in pmemd?? Dean Cuebas (Tue Dec 01 2009 - 13:31:21 CST)
- Re: [AMBER] SGLD in pmemd?? Robert Duke (Tue Dec 01 2009 - 14:04:14 CST)
- [AMBER] Re: looking for parameters for DHFR substrates and inhibitors... [one more try] Sidney Elmer (Tue Dec 01 2009 - 17:34:36 CST)
- Re: [AMBER] ptraj utility Neha Bharat Gajaria (Tue Dec 01 2009 - 20:13:41 CST)
- Re: [AMBER] Regarding rigid bond aneesh cna (Tue Dec 01 2009 - 23:17:46 CST)
- Re: [AMBER] looking for parameters for DHFR substrates and inhibitors... [one more try] FyD (Wed Dec 02 2009 - 02:19:00 CST)
- [AMBER] How to get total energy of a system from QM/MM gunajyoti das (Wed Dec 02 2009 - 02:56:06 CST)
- Re: [AMBER] How to get total energy of a system from QM/MM steinbrt_at_rci.rutgers.edu (Wed Dec 02 2009 - 03:53:03 CST)
- Re: [AMBER] Regarding rigid bond Bill Ross (Wed Dec 02 2009 - 11:20:52 CST)
- [AMBER] MMGBSA Zhongjie Liang (Wed Dec 02 2009 - 19:17:44 CST)
- [AMBER] look at Amber's slides, email Sally Pias (Wed Dec 02 2009 - 23:08:47 CST)
- [AMBER] Segmentation fault gurunath katagi (Thu Dec 03 2009 - 00:45:20 CST)
- [AMBER] NAB example scripts in AmberTools (Amber 10) Christopher Wassman (Thu Dec 03 2009 - 03:08:37 CST)
- [AMBER] binding energy of multiple ligand-receptor complex 欧阳德方 (Thu Dec 03 2009 - 04:51:17 CST)
- Re: [AMBER] NAB example scripts in AmberTools (Amber 10) case (Thu Dec 03 2009 - 07:12:27 CST)
- [AMBER] QM/MM input file error mahesh kumar (Thu Dec 03 2009 - 08:05:25 CST)
- [AMBER] semiempirical copper Jacopo Sgrignani (Thu Dec 03 2009 - 08:09:57 CST)
- [AMBER] Comparison of the CHARMM and AMBER parameters for alkane intra\\sa175950 (Thu Dec 03 2009 - 10:49:28 CST)
- RE: [AMBER] semiempirical copper Ross Walker (Thu Dec 03 2009 - 11:28:45 CST)
- RE: [AMBER] QM/MM input file error Ross Walker (Thu Dec 03 2009 - 11:36:47 CST)
- RE: [AMBER] Comparison of the CHARMM and AMBER parameters for alkane Ross Walker (Thu Dec 03 2009 - 11:52:58 CST)
- Re: [AMBER] Comparison of the CHARMM and AMBER parameters for alkane FyD (Thu Dec 03 2009 - 13:43:10 CST)
- [AMBER] AmberTools modifications for Ubuntu 9.10 peker milas (Thu Dec 03 2009 - 15:58:31 CST)
- [AMBER] help with TIP4P and mpi pmemd Hashem Taha (Thu Dec 03 2009 - 16:16:22 CST)
- Re: [AMBER] help with TIP4P and mpi pmemd Robert Duke (Thu Dec 03 2009 - 16:37:14 CST)
- [AMBER] parameter file for the sulphate ion Fenghui Fan (Thu Dec 03 2009 - 18:02:30 CST)
- [AMBER] Amber 10 installation: /bin/sh: ./Makelist: not found Diego Javier Alonso de Armi駉 (Thu Dec 03 2009 - 19:47:08 CST)
- Re: [AMBER] help with TIP4P and mpi pmemd Hashem Taha (Thu Dec 03 2009 - 20:26:57 CST)
- Re: [AMBER] Amber 10 installation: /bin/sh: ./Makelist: not found Mengjuei Hsieh (Thu Dec 03 2009 - 20:52:48 CST)
- Re: [AMBER] Amber 10 installation: /bin/sh: ./Makelist: not found Jason Swails (Thu Dec 03 2009 - 20:55:09 CST)
- [AMBER] clarification DNA forcefield Taufik Al-Sarraj (Thu Dec 03 2009 - 22:01:02 CST)
- [AMBER] sodium ions before or after solvation makes a difference Naser Alijabbari (Thu Dec 03 2009 - 23:01:13 CST)
- Re: [AMBER] help with TIP4P and mpi pmemd Hashem Taha (Thu Dec 03 2009 - 23:29:38 CST)
- Re: [AMBER] help with TIP4P and mpi pmemd Robert Duke (Thu Dec 03 2009 - 23:58:58 CST)
- Re: [AMBER] Scripting tleap Jio M (Fri Dec 04 2009 - 00:04:01 CST)
- Re: [AMBER] binding energy of multiple ligand-receptor complex Oliver Kuhn (Fri Dec 04 2009 - 03:10:39 CST)
- Re: [AMBER] clarification DNA forcefield Jiri Sponer (Fri Dec 04 2009 - 03:19:05 CST)
- [AMBER] mm_pbsa- Decomposition: bad atom type Antonija Tomi膰 (Fri Dec 04 2009 - 03:27:31 CST)
- Re: [AMBER] binding energy of multiple ligand-receptor complex steinbrt_at_rci.rutgers.edu (Fri Dec 04 2009 - 03:47:26 CST)
- [AMBER] ptraj usage for clustering of protein ensembles manual or tutorial Andrew Voronkov (Fri Dec 04 2009 - 03:55:05 CST)
- RE: [AMBER] Comparison of the CHARMM and AMBER parameters for alkane intra\\sa175950 (Fri Dec 04 2009 - 03:54:55 CST)
- [AMBER] aromatic ring getting distorted Jio M (Fri Dec 04 2009 - 04:03:49 CST)
- Re: [AMBER] mm_pbsa- Decomposition: bad atom type Hannes Kopitz (Fri Dec 04 2009 - 04:45:10 CST)
- Re: [AMBER] mm_pbsa- Decomposition: bad atom type Antonija Tomi膰 (Fri Dec 04 2009 - 04:57:59 CST)
- [AMBER] problem with antechamber sculiujl (Fri Dec 04 2009 - 05:38:04 CST)
- Re: [AMBER] Amber 10 installation: /bin/sh: ./Makelist: not found Diego Javier Alonso de Armi駉 (Fri Dec 04 2009 - 06:09:04 CST)
- Re:Re: [AMBER] problem with antechamber sculiujl (Fri Dec 04 2009 - 06:18:24 CST)
- Re: [AMBER] Amber 10 installation: /bin/sh: ./Makelist: not found case (Fri Dec 04 2009 - 08:18:09 CST)
- Re: [AMBER] AmberTools modifications for Ubuntu 9.10 case (Fri Dec 04 2009 - 09:31:16 CST)
- Re: [AMBER] ptraj usage for clustering of protein ensembles manual or tutorial Thomas Cheatham III (Fri Dec 04 2009 - 11:01:35 CST)
- Re: [AMBER] sodium ions before or after solvation makes a difference Thomas Cheatham III (Fri Dec 04 2009 - 11:09:17 CST)
- Re: [AMBER] Amber 10 installation: /bin/sh: ./Makelist: not found Jason Swails (Fri Dec 04 2009 - 11:42:19 CST)
- RE: [AMBER] Comparison of the CHARMM and AMBER parameters for alkane FyD (Fri Dec 04 2009 - 11:44:57 CST)
- Re: [AMBER] sodium ions before or after solvation makes a difference Bill Ross (Fri Dec 04 2009 - 12:23:44 CST)
- Re: [AMBER] ptraj usage for clustering of protein ensembles manual or tutorial Andrew Voronkov (Fri Dec 04 2009 - 13:09:58 CST)
- RE: [AMBER] Comparison of the CHARMM and AMBER parameters for alkane Ross Walker (Fri Dec 04 2009 - 13:16:50 CST)
- Re: [AMBER] ptraj usage for clustering of protein ensembles manual or tutorial Thomas Cheatham III (Fri Dec 04 2009 - 13:20:21 CST)
- RE: [AMBER] Comparison of the CHARMM and AMBER parameters for alkane FyD (Fri Dec 04 2009 - 14:02:17 CST)
- Re: [AMBER] binding energy of multiple ligand-receptor complex Jason Swails (Fri Dec 04 2009 - 14:20:58 CST)
- Re: [AMBER] help with TIP4P and mpi pmemd Hashem Taha (Fri Dec 04 2009 - 15:01:50 CST)
- Re: [AMBER] help with TIP4P and mpi pmemd case (Fri Dec 04 2009 - 15:16:22 CST)
- Re: [AMBER] help with TIP4P and mpi pmemd Robert Duke (Fri Dec 04 2009 - 15:26:41 CST)
- Re: [AMBER] help with TIP4P and mpi pmemd Hashem Taha (Fri Dec 04 2009 - 15:44:44 CST)
- RE: [AMBER] binding energy of multiple ligand-receptor complex 欧阳德方 (Fri Dec 04 2009 - 15:59:21 CST)
- Re: [AMBER] help with TIP4P and mpi pmemd Lizzard Man (Fri Dec 04 2009 - 16:47:08 CST)
- Re: [AMBER] distance-dependent dielectric constant minimization Rilei Yu (Sat Dec 05 2009 - 02:21:58 CST)
- Re: [AMBER] distance-dependent dielectric constant minimization Bill Ross (Sat Dec 05 2009 - 11:30:09 CST)
- Re: [AMBER] distance-dependent dielectric constant minimization case (Sat Dec 05 2009 - 21:03:47 CST)
- Re: [AMBER] distance-dependent dielectric constant minimization Rilei Yu (Sun Dec 06 2009 - 01:37:13 CST)
- Re: [AMBER] ptraj usage for clustering of protein ensembles manual or tutorial Andrew Voronkov (Sun Dec 06 2009 - 05:58:41 CST)
- Re: [AMBER] ptraj usage for clustering of protein ensembles manual or tutorial Andrew Voronkov (Sun Dec 06 2009 - 07:39:39 CST)
- [AMBER] COOH group troubling Jio M (Sun Dec 06 2009 - 07:57:06 CST)
- Re: [AMBER] COOH group troubling Jason Swails (Sun Dec 06 2009 - 09:05:07 CST)
- Re: [AMBER] COOH group troubling Bill Ross (Sun Dec 06 2009 - 10:46:58 CST)
- Re: [AMBER] ptraj usage for clustering of protein ensembles manual or tutorial Thomas Cheatham (Sun Dec 06 2009 - 11:23:48 CST)
- Re: [AMBER] COOH group troubling Jio M (Sun Dec 06 2009 - 12:53:22 CST)
- Re: [AMBER] COOH group troubling Bill Ross (Sun Dec 06 2009 - 13:07:44 CST)
- Re: [AMBER] ambpdb water removal for rst files Andrew Voronkov (Sun Dec 06 2009 - 13:44:28 CST)
- Re: [AMBER] ambpdb water removal for rst files Bill Ross (Sun Dec 06 2009 - 14:03:00 CST)
- Re: [AMBER] ambpdb water removal for rst files Bill Ross (Sun Dec 06 2009 - 14:09:26 CST)
- Re: [AMBER] Scripting tleap case (Sun Dec 06 2009 - 14:11:02 CST)
- Re: [AMBER] aromatic ring getting distorted case (Sun Dec 06 2009 - 14:14:45 CST)
- [AMBER] how to restart the stopped MM-GBSA job Zhongjie Liang (Sun Dec 06 2009 - 19:36:56 CST)
- [AMBER] Problem of MM-PBSA 欧阳德方 (Sun Dec 06 2009 - 23:09:47 CST)
- Re: [AMBER] Scripting tleap Jio M (Mon Dec 07 2009 - 00:56:59 CST)
- Re: [AMBER] aromatic ring getting distorted Jio M (Mon Dec 07 2009 - 01:04:55 CST)
- [AMBER] force field parameters Piotr Cieplak (Mon Dec 07 2009 - 01:25:03 CST)
- [AMBER] phosphorus to carbon on minimization Alexander Boncheff (Mon Dec 07 2009 - 09:48:45 CST)
- [AMBER] Topology Reorder for EVB Andrea Coletta (Mon Dec 07 2009 - 09:58:50 CST)
- [AMBER] Parametrizing charges for modified DNA bases Bob Johnson (Mon Dec 07 2009 - 12:05:09 CST)
- Re: [AMBER] Problem of MM-PBSA Ray Luo (Mon Dec 07 2009 - 12:19:02 CST)
- Re: [AMBER] phosphorus to carbon on minimization Jason Swails (Mon Dec 07 2009 - 12:43:05 CST)
- Re: [AMBER] phosphorus to carbon on minimization FyD (Mon Dec 07 2009 - 12:56:28 CST)
- Re: [AMBER] Topology Reorder for EVB Jason Swails (Mon Dec 07 2009 - 12:59:23 CST)
- Re: [AMBER] Topology Reorder for EVB E.M. (Mon Dec 07 2009 - 13:17:44 CST)
- Re: [AMBER] Parametrizing charges for modified DNA bases FyD (Mon Dec 07 2009 - 13:31:02 CST)
- RE: [AMBER] Problem of MM-PBSA 欧阳德方 (Mon Dec 07 2009 - 16:30:41 CST)
- Re: [AMBER] Problem of MM-PBSA Ray Luo (Mon Dec 07 2009 - 16:44:53 CST)
- Re: [AMBER] clarification DNA forcefield Taufik Al-Sarraj (Mon Dec 07 2009 - 18:22:33 CST)
- [AMBER] question about failures peker milas (Mon Dec 07 2009 - 21:37:40 CST)
- Re: [AMBER] question about failures Jason Swails (Mon Dec 07 2009 - 22:51:28 CST)
- Re: [AMBER] question about failures peker milas (Mon Dec 07 2009 - 23:31:06 CST)
- Re: [AMBER] question about failures Jason Swails (Tue Dec 08 2009 - 00:00:00 CST)
- Re: [AMBER] question about failures peker milas (Tue Dec 08 2009 - 00:25:10 CST)
- Re: [AMBER] Topology Reorder for EVB Andrea Coletta (Tue Dec 08 2009 - 03:40:23 CST)
- Re: Re: [AMBER] ptraj usage for clustering of protein ensembles manual or tutorial Andrew Voronkov (Tue Dec 08 2009 - 08:48:56 CST)
- Re: Re: [AMBER] ptraj usage for clustering of protein ensembles manual or tutorial Carlos Simmerling (Tue Dec 08 2009 - 08:59:48 CST)
- [AMBER] myristate to palmitate transformation Anthony Pemberton (Tue Dec 08 2009 - 10:24:59 CST)
- [AMBER] Re: EEL = ************* Taufik Al-Sarraj (Tue Dec 08 2009 - 12:34:35 CST)
- [AMBER] Custom RNA modeling Wallace Kunin (Tue Dec 08 2009 - 14:27:55 CST)
- [AMBER] ptraj image Taufik Al-Sarraj (Tue Dec 08 2009 - 15:37:55 CST)
- Re: [AMBER] ptraj image Thomas Cheatham (Tue Dec 08 2009 - 15:50:09 CST)
- Re: [AMBER] Custom RNA modeling Ilyas Yildirim (Tue Dec 08 2009 - 16:01:42 CST)
- Re: [AMBER] ptraj image Bill Ross (Tue Dec 08 2009 - 16:08:42 CST)
- Re: [AMBER] ptraj image Taufik Al-Sarraj (Tue Dec 08 2009 - 17:54:46 CST)
- Re: [AMBER] ptraj image Bill Ross (Tue Dec 08 2009 - 18:29:03 CST)
- [AMBER] Nmode "not running properly" problem in MM_PBSA Du Yun (Tue Dec 08 2009 - 19:56:48 CST)
- [AMBER] PIMD test stalling peker milas (Tue Dec 08 2009 - 20:23:45 CST)
- [AMBER] Re: PIMD test stalling peker milas (Tue Dec 08 2009 - 21:11:44 CST)
- [AMBER] how to add desired number of water balaji nagarajan (Tue Dec 08 2009 - 21:18:49 CST)
- Re: [AMBER] ATP/GTP parameters E.M. (Tue Dec 08 2009 - 22:36:19 CST)
- [AMBER] ptraj image Neha Bharat Gajaria (Wed Dec 09 2009 - 00:13:36 CST)
- [AMBER] Re: ATP/GTP parameters FyD (Wed Dec 09 2009 - 00:51:03 CST)
- [AMBER] Re: COOH troubling Jio M (Wed Dec 09 2009 - 06:16:17 CST)
- Re: [AMBER] Re: COOH troubling case (Wed Dec 09 2009 - 07:40:10 CST)
- Re: [AMBER] ptraj image Thomas Cheatham (Wed Dec 09 2009 - 07:41:54 CST)
- Re: [AMBER] Re: COOH troubling Jio M (Wed Dec 09 2009 - 09:01:30 CST)
- Re: [AMBER] how to add desired number of water Simon Becker (Wed Dec 09 2009 - 10:09:51 CST)
- Re: [AMBER] Custom RNA modeling Wallace Kunin (Wed Dec 09 2009 - 10:10:44 CST)
- Re: [AMBER] ptraj image Daniel Roe (Wed Dec 09 2009 - 10:21:18 CST)
- [AMBER] Re: COOH group trouble Jio M (Wed Dec 09 2009 - 10:38:09 CST)
- Re: [AMBER] how to add desired number of water Bill Ross (Wed Dec 09 2009 - 11:46:59 CST)
- Re: [AMBER] ambertools and Snow Leopard 64 bits kernel Scott Brozell (Wed Dec 09 2009 - 15:48:30 CST)
- Re: [AMBER] Re: COOH troubling Junmei Wang (Wed Dec 09 2009 - 17:17:12 CST)
- Re: [AMBER] problem with antechamber Junmei Wang (Wed Dec 09 2009 - 17:24:11 CST)
- [AMBER] Re: nab normal mode analysis has imaginary frequencies Junmei Wang (Wed Dec 09 2009 - 17:34:28 CST)
- Re: [AMBER] Re: COOH troubling Dean Cuebas (Wed Dec 09 2009 - 18:00:40 CST)
- Re: [AMBER] Re: COOH troubling Jio M (Thu Dec 10 2009 - 00:21:24 CST)
- Re: [AMBER] Re: COOH troubling Jio M (Thu Dec 10 2009 - 05:03:59 CST)
- [AMBER] pressure tensor components Silvia Carlotto (Thu Dec 10 2009 - 07:12:51 CST)
- Re: [AMBER] Re: nab normal mode analysis has imaginary frequencies case (Thu Dec 10 2009 - 08:46:20 CST)
- [AMBER] MMPBSA on a selected region ERIK.LAURINI_at_phd.units.it (Thu Dec 10 2009 - 12:20:19 CST)
- Re: [AMBER] MMPBSA on a selected region Jason Swails (Thu Dec 10 2009 - 13:15:58 CST)
- Re: [AMBER] Re: EEL = ************* case (Thu Dec 10 2009 - 14:13:15 CST)
- Re: [AMBER] Re: COOH troubling Junmei Wang (Thu Dec 10 2009 - 15:45:43 CST)
- RE: [AMBER] antechamber error Mike Hanby (Thu Dec 10 2009 - 16:34:30 CST)
- Re: [AMBER] antechamber error David Watson (Thu Dec 10 2009 - 17:26:00 CST)
- [AMBER] why is the ff03 force field in Amber8 and Amber10 different for Ala2 dipeptide Dongshan Wei (Thu Dec 10 2009 - 17:40:19 CST)
- Re: [AMBER] why is the ff03 force field in Amber8 and Amber10 different for Ala2 dipeptide Carlos Simmerling (Thu Dec 10 2009 - 17:52:40 CST)
- RE: [AMBER] why is the ff03 force field in Amber8 and Amber10 different for Ala2 dipeptide Ross Walker (Thu Dec 10 2009 - 18:02:16 CST)
- Re: [AMBER] why is the ff03 force field in Amber8 and Amber10 different for Ala2 dipeptide Dongshan Wei (Thu Dec 10 2009 - 18:14:12 CST)
- Re: [AMBER] Re: COOH troubling Dean Cuebas (Fri Dec 11 2009 - 00:41:27 CST)
- Re: [AMBER] antechamber error case (Fri Dec 11 2009 - 06:51:44 CST)
- Re: [AMBER] Re: COOH troubling case (Fri Dec 11 2009 - 07:27:09 CST)
- [AMBER] QM/MM minimization Hashem Taha (Fri Dec 11 2009 - 12:24:25 CST)
- Re: [AMBER] Re: COOH troubling Jio M (Fri Dec 11 2009 - 13:37:39 CST)
- [AMBER] amber10 pmemd fail Aragorn Steiger (Fri Dec 11 2009 - 14:35:49 CST)
- Re: [AMBER] amber10 pmemd fail Robert Duke (Fri Dec 11 2009 - 15:40:31 CST)
- FW: Solvent/solute ratio? Re: [AMBER] how to add desired number of water Hopkins, Robert (Fri Dec 11 2009 - 16:05:51 CST)
- Re: FW: Solvent/solute ratio? Re: [AMBER] how to add desired number of water Bill Ross (Fri Dec 11 2009 - 16:19:57 CST)
- Re: FW: Solvent/solute ratio? Re: [AMBER] how to add desired numberof water Hopkins, Robert (Fri Dec 11 2009 - 16:24:02 CST)
- RE: FW: Solvent/solute ratio? Re: [AMBER] how to add desired numberof water Richard Owczarzy (Fri Dec 11 2009 - 18:19:31 CST)
- RE: FW: Solvent/solute ratio? Re: [AMBER] how to add desired numberof water Bill Ross (Fri Dec 11 2009 - 18:57:41 CST)
- RE: [AMBER] QM/MM minimization Ross Walker (Fri Dec 11 2009 - 21:39:55 CST)
- RE: [AMBER] amber10 pmemd fail Ross Walker (Fri Dec 11 2009 - 21:43:53 CST)
- RE: FW: Solvent/solute ratio? Re: [AMBER] how to add desired number of water Ross Walker (Fri Dec 11 2009 - 21:47:19 CST)
- Re: [AMBER] Re: COOH troubling Jio M (Sat Dec 12 2009 - 00:27:25 CST)
- Re: [AMBER] Re: COOH troubling Dean Cuebas (Sat Dec 12 2009 - 10:47:42 CST)
- RE: [Possible Spam: 10%] RE: FW: Solvent/solute ratio? Re: [AMBER] how to add desirednumberof water Hopkins, Robert (Sat Dec 12 2009 - 18:29:04 CST)
- Re: [AMBER] Nmode "not running properly" problem in MM_PBSA case (Sun Dec 13 2009 - 09:06:36 CST)
- Re: [AMBER] pressure tensor components case (Sun Dec 13 2009 - 09:10:02 CST)
- [AMBER] amber@ambermd.org shumao_at_cqut.edu.cn (Sun Dec 13 2009 - 21:01:18 CST)
- [AMBER] How to run LEaP in a shell file? SongLin (Mon Dec 14 2009 - 01:10:00 CST)
- [AMBER] Different simulation times for similar systems Oliver Kuhn (Mon Dec 14 2009 - 06:31:50 CST)
- Re: [AMBER] How to run LEaP in a shell file? case (Mon Dec 14 2009 - 06:44:29 CST)
- Re: [AMBER] How to run LEaP in a shell file? SongLin (Mon Dec 14 2009 - 07:45:03 CST)
- [AMBER] how can i include ANP residue Bradley Dickson (Mon Dec 14 2009 - 09:07:50 CST)
- Re: [AMBER] Custom RNA modeling Wallace Kunin (Mon Dec 14 2009 - 11:50:25 CST)
- Re: [AMBER] Different simulation times for similar systems Carlos Simmerling (Mon Dec 14 2009 - 12:11:56 CST)
- Re: [AMBER] AMBER: segmentation fault when running parmchk Scott Brozell (Mon Dec 14 2009 - 12:14:15 CST)
- Re: [AMBER] Custom RNA modeling case (Mon Dec 14 2009 - 12:32:11 CST)
- Re: [AMBER] Custom RNA modeling Thomas Cheatham (Mon Dec 14 2009 - 12:35:44 CST)
- [AMBER] Installation on MacOSX Freedman, Tanya (Mon Dec 14 2009 - 12:59:06 CST)
- Re: [AMBER] Installation on MacOSX David Watson (Mon Dec 14 2009 - 14:01:52 CST)
- Re: [AMBER] how can i include ANP residue FyD (Mon Dec 14 2009 - 14:29:42 CST)
- Re: [AMBER] Custom RNA modeling Wallace Kunin (Mon Dec 14 2009 - 15:49:29 CST)
- Re: [AMBER] Custom RNA modeling Carlos Simmerling (Mon Dec 14 2009 - 15:55:20 CST)
- Re: [AMBER] how can i include ANP residue Bradley Dickson (Mon Dec 14 2009 - 16:00:32 CST)
- Re: [AMBER] Custom RNA modeling Jiri Sponer (Mon Dec 14 2009 - 16:08:07 CST)
- Re: [AMBER] how can i include ANP residue David Watson (Mon Dec 14 2009 - 16:44:30 CST)
- [AMBER] comparing coordinates from restart file and ptraj outputs Sidney Elmer (Mon Dec 14 2009 - 19:23:50 CST)
- Re: [AMBER] comparing coordinates from restart file and ptraj outputs Jason Swails (Mon Dec 14 2009 - 19:53:39 CST)
- Re: Solvent/solute ratio? Re: [AMBER] how to add desired numberof water Dean Cuebas (Mon Dec 14 2009 - 20:40:25 CST)
- Re: [AMBER] comparing coordinates from restart file and ptraj outputs case (Mon Dec 14 2009 - 21:28:32 CST)
- Re: [AMBER] Segmentation fault in antechamber Scott Brozell (Mon Dec 14 2009 - 23:34:39 CST)
- Re: [AMBER] comparing coordinates from restart file and ptraj outputs Sidney Elmer (Tue Dec 15 2009 - 02:21:35 CST)
- [AMBER] Number of Cycles s. Bill (Tue Dec 15 2009 - 02:31:21 CST)
- Re: [AMBER] Installation on MacOSX Alan (Tue Dec 15 2009 - 04:26:48 CST)
- Re: [AMBER] Installation on MacOSX Jason Swails (Tue Dec 15 2009 - 05:43:47 CST)
- Re: [AMBER] comparing coordinates from restart file and ptraj outputs Jason Swails (Tue Dec 15 2009 - 06:00:41 CST)
- Re: [AMBER] Number of Cycles Jason Swails (Tue Dec 15 2009 - 06:10:02 CST)
- Re: [AMBER] Installation on MacOSX David Watson (Tue Dec 15 2009 - 06:54:06 CST)
- Re: [AMBER] Number of Cycles Robert Duke (Tue Dec 15 2009 - 07:16:51 CST)
- Re: [AMBER] Number of Cycles Robert Duke (Tue Dec 15 2009 - 07:23:04 CST)
- Re: [AMBER] Number of Cycles Carlos Simmerling (Tue Dec 15 2009 - 07:31:09 CST)
- Re: [AMBER] Number of Cycles Jason Swails (Tue Dec 15 2009 - 07:32:31 CST)
- Re: [AMBER] Number of Cycles Jason Swails (Tue Dec 15 2009 - 07:34:29 CST)
- [AMBER] addles - neb error balaji nagarajan (Tue Dec 15 2009 - 08:38:53 CST)
- Re: [AMBER] Number of Cycles Robert Duke (Tue Dec 15 2009 - 08:55:31 CST)
- Re: [AMBER] comparing coordinates from restart file and ptraj outputs Daniel Roe (Tue Dec 15 2009 - 09:45:20 CST)
- Re: [AMBER] Installation on MacOSX Alan (Tue Dec 15 2009 - 10:11:20 CST)
- RE: [AMBER] addles - neb error Ross Walker (Tue Dec 15 2009 - 10:45:19 CST)
- Re: [AMBER] Number of Cycles Carlos Simmerling (Tue Dec 15 2009 - 10:53:06 CST)
- Re: [AMBER] Number of Cycles Robert Duke (Tue Dec 15 2009 - 11:09:42 CST)
- Re: [AMBER] Number of Cycles Jason Swails (Tue Dec 15 2009 - 11:10:31 CST)
- Re: [AMBER] Number of Cycles Carlos Simmerling (Tue Dec 15 2009 - 11:13:17 CST)
- Re: [AMBER] Number of Cycles Jason Swails (Tue Dec 15 2009 - 11:18:37 CST)
- Re: [AMBER] Number of Cycles Robert Duke (Tue Dec 15 2009 - 11:29:22 CST)
- RE: [AMBER] Number of Cycles Niel Henriksen (Tue Dec 15 2009 - 11:41:55 CST)
- Re: [AMBER] Number of Cycles Bill Ross (Tue Dec 15 2009 - 11:53:24 CST)
- Re: [AMBER] Number of Cycles Robert Duke (Tue Dec 15 2009 - 11:54:28 CST)
- RE: [AMBER] Number of Cycles Niel Henriksen (Tue Dec 15 2009 - 12:11:08 CST)
- Re: [AMBER] Number of Cycles Jason Swails (Tue Dec 15 2009 - 12:32:40 CST)
- Re: [AMBER] Number of Cycles Robert Duke (Tue Dec 15 2009 - 13:00:19 CST)
- RE: [AMBER] Number of Cycles Ross Walker (Tue Dec 15 2009 - 13:01:40 CST)
- Re: [AMBER] comparing coordinates from restart file and ptraj outputs Sidney Elmer (Tue Dec 15 2009 - 14:15:06 CST)
- RE: [AMBER] addles - neb error balaji nagarajan (Tue Dec 15 2009 - 21:26:51 CST)
- [AMBER] non standard residue and bond command Neha Bharat Gajaria (Wed Dec 16 2009 - 03:50:02 CST)
- [AMBER] chemical shifts: nter and cter Eliana Asciutto (Wed Dec 16 2009 - 13:55:14 CST)
- Re: [AMBER] chemical shifts: nter and cter case (Wed Dec 16 2009 - 14:52:11 CST)
- Re: [AMBER] addles - neb error case (Wed Dec 16 2009 - 15:01:20 CST)
- [AMBER] NAMD dcd files in ptraj Ganesh Kamath (Wed Dec 16 2009 - 15:04:25 CST)
- Re: [AMBER] non standard residue and bond command case (Wed Dec 16 2009 - 15:06:34 CST)
- Re: [AMBER] non standard residue and bond command Bill Ross (Wed Dec 16 2009 - 15:20:08 CST)
- [AMBER] Parameters for HYP and CGU Rilei Yu (Wed Dec 16 2009 - 21:17:40 CST)
- RE: [AMBER] addles - neb error balaji nagarajan (Wed Dec 16 2009 - 21:20:22 CST)
- Re: [AMBER] Parameters for HYP and CGU Adrian Roitberg (Wed Dec 16 2009 - 21:27:25 CST)
- Re: [AMBER] Parameters for HYP and CGU Jason Swails (Wed Dec 16 2009 - 21:58:02 CST)
- Re: [AMBER] Parameters for HYP and CGU Rilei Yu (Wed Dec 16 2009 - 23:57:13 CST)
- Re: [AMBER] Parameters for HYP and CGU Rilei Yu (Wed Dec 16 2009 - 23:58:26 CST)
- Re: [AMBER] Parameters for HYP and CGU FyD (Thu Dec 17 2009 - 02:46:55 CST)
- Re: [AMBER] Parameters for HYP and CGU Alessandro Contini (Thu Dec 17 2009 - 03:11:44 CST)
- [AMBER] branched aminoacids Alessandro Contini (Thu Dec 17 2009 - 03:14:34 CST)
- Re: [AMBER] branched aminoacids FyD (Thu Dec 17 2009 - 03:49:16 CST)
- [AMBER] C1, C2 & C3 carbon types in generalized Born implementation igb=5 Nils Jan Daniel Drechsel (Thu Dec 17 2009 - 03:52:59 CST)
- [AMBER] what the value of "Br" bondi radii, and how to modify "fillratio" error message. B (Thu Dec 17 2009 - 03:59:29 CST)
- Re: [AMBER] branched aminoacids Alessandro Contini (Thu Dec 17 2009 - 05:22:56 CST)
- Re: [AMBER] C1, C2 & C3 carbon types in generalized Born implementation igb=5 case (Thu Dec 17 2009 - 07:03:27 CST)
- [AMBER] MM_PBSA Problem (no radius for ion) s. Bill (Thu Dec 17 2009 - 13:39:49 CST)
- Re: [AMBER] MM_PBSA Problem (no radius for ion) Scott Brozell (Thu Dec 17 2009 - 21:07:21 CST)
- [AMBER] Compatibility of ONIOM and Amber vaibhav dixit (Fri Dec 18 2009 - 00:30:32 CST)
- Re: [AMBER] C1, C2 & C3 carbon types in generalized Born implementation igb=5 Nils Jan Daniel Drechsel (Fri Dec 18 2009 - 04:37:53 CST)
- Re: [AMBER] MM_PBSA Problem (no radius for ion) s. Bill (Fri Dec 18 2009 - 09:33:57 CST)
- [AMBER] Inorganic Phosphate Parameters Cihan Aydin (Fri Dec 18 2009 - 14:19:21 CST)
- Re: [AMBER] Inorganic Phosphate Parameters. . Don.Bashford_at_stjude.org (Fri Dec 18 2009 - 16:12:58 CST)
- [AMBER] antechamber bond type error Mark M Huntress (Fri Dec 18 2009 - 16:26:57 CST)
- [AMBER] note on Antechamber error Mark M Huntress (Fri Dec 18 2009 - 16:27:50 CST)
- Re: [AMBER] Inorganic Phosphate Parameters. . Jason Swails (Fri Dec 18 2009 - 16:54:39 CST)
- [AMBER] SQM and AMBER Jio M (Sat Dec 19 2009 - 00:36:05 CST)
- Re: [AMBER] antechamber bond type error case (Sat Dec 19 2009 - 11:33:40 CST)
- Re: [AMBER] Inorganic Phosphate Parameters. . case (Sat Dec 19 2009 - 11:39:28 CST)
- [AMBER] Non-Standard Atoms Jack Shultz (Sat Dec 19 2009 - 19:56:28 CST)
- Re: [AMBER] Non-Standard Atoms Jason Swails (Sat Dec 19 2009 - 20:54:20 CST)
- Re: [AMBER] Non-Standard Atoms case (Sun Dec 20 2009 - 13:02:46 CST)
- Re: [AMBER] Non-Standard Atoms Jack Shultz (Sun Dec 20 2009 - 18:40:26 CST)
- [AMBER] hi ashish pandey (Mon Dec 21 2009 - 00:45:40 CST)
- Re: [AMBER] hi David Watson (Mon Dec 21 2009 - 03:09:53 CST)
- [AMBER] Sander crash, corrupt rst file... Waqas Nasir (Mon Dec 21 2009 - 05:44:42 CST)
- [AMBER] (No reply) Compatibility of ONIOM and Amber vaibhav dixit (Mon Dec 21 2009 - 07:58:03 CST)
- [AMBER] Release of AmberTools, version 1.3 David A. Case (Mon Dec 21 2009 - 08:33:20 CST)
- [AMBER] Gaff compatible with ff899.SB Pol Boudard (Mon Dec 21 2009 - 09:03:25 CST)
- Re: [AMBER] Gaff compatible with ff899.SB Carlos Simmerling (Mon Dec 21 2009 - 09:32:40 CST)
- [AMBER] MM PBSA stats Peter Jones (Mon Dec 21 2009 - 23:57:51 CST)
- [AMBER] PQR file - HELP PLEASE s. Bill (Tue Dec 22 2009 - 06:57:48 CST)
- [AMBER] MMGBSA error Zhongjie Liang (Tue Dec 22 2009 - 07:04:09 CST)
- Re: [AMBER] MMGBSA error Carlos Simmerling (Tue Dec 22 2009 - 07:05:41 CST)
- [AMBER] sqm x mopac in AmberTools 1.3 Alan (Tue Dec 22 2009 - 09:02:22 CST)
- Re: [AMBER] sqm x mopac in AmberTools 1.3 David Watson (Tue Dec 22 2009 - 09:20:37 CST)
- Re: [AMBER] sqm x mopac in AmberTools 1.3 David Watson (Tue Dec 22 2009 - 09:58:56 CST)
- Re: [AMBER] PQR file - HELP PLEASE Jason Swails (Tue Dec 22 2009 - 11:21:41 CST)
- [AMBER] Van der Waals and electrostatic Forces Frank X. V醶quez (Tue Dec 22 2009 - 11:42:33 CST)
- [AMBER] HOW TO OPTIMISE INDI-DIELC_MM VALUE for MM_PBSA calculation ? Marek Maly (Tue Dec 22 2009 - 12:49:42 CST)
- [AMBER] pupil and amber davide branduardi (Tue Dec 22 2009 - 14:29:37 CST)
- Re: [AMBER] PQR file - HELP PLEASE s. Bill (Tue Dec 22 2009 - 15:27:48 CST)
- Re: [AMBER] pupil and amber Ben Roberts (Tue Dec 22 2009 - 20:59:04 CST)
- Re: [AMBER] sqm x mopac in AmberTools 1.3 David A. Case (Tue Dec 22 2009 - 21:50:35 CST)
- Re: [AMBER] sqm x mopac in AmberTools 1.3 David A. Case (Tue Dec 22 2009 - 21:53:20 CST)
- [AMBER] atom type shamoon siddiqui (Tue Dec 22 2009 - 23:31:42 CST)
- [AMBER] AmberTools-1.3 not compiling on MacOsX Cesar Millan (Wed Dec 23 2009 - 00:37:37 CST)
- Re: [AMBER] AmberTools-1.3 not compiling on MacOsX David Watson (Wed Dec 23 2009 - 00:59:09 CST)
- Re: [AMBER] AmberTools-1.3 not compiling on MacOsX Mengjuei Hsieh (Wed Dec 23 2009 - 03:12:19 CST)
- [AMBER] typo in AmberTools.pdf (release 1.3) Alan (Wed Dec 23 2009 - 03:51:01 CST)
- Re: [AMBER] AmberTools-1.3 not compiling on MacOsX Mengjuei Hsieh (Wed Dec 23 2009 - 04:05:48 CST)
- [AMBER] using sqm from AmberTools 1.3 Alan (Wed Dec 23 2009 - 04:35:33 CST)
- Re: [AMBER] AmberTools-1.3 not compiling on MacOsX Jason Swails (Wed Dec 23 2009 - 05:38:08 CST)
- Re: [AMBER] atom type FyD (Wed Dec 23 2009 - 07:00:39 CST)
- 答复: [AMBER] MMGBSA error Zhongjie Liang (Wed Dec 23 2009 - 07:12:07 CST)
- Re: [AMBER] using sqm from AmberTools 1.3 David A. Case (Wed Dec 23 2009 - 08:16:04 CST)
- Re: [AMBER] using sqm from AmberTools 1.3 David A. Case (Wed Dec 23 2009 - 08:26:36 CST)
- Re: [AMBER] typo in AmberTools.pdf (release 1.3) David A. Case (Wed Dec 23 2009 - 08:26:51 CST)
- [AMBER] NEB-error balaji nagarajan (Wed Dec 23 2009 - 10:04:46 CST)
- Re: [AMBER] NEB-error Carlos Simmerling (Wed Dec 23 2009 - 10:12:01 CST)
- [AMBER] How to put another 10 ligands into the simulation system? Chih-Ying Lin (Wed Dec 23 2009 - 10:18:47 CST)
- [AMBER] CHARMM psf file to Amber prmtop file Sarvin Moghaddam (Wed Dec 23 2009 - 10:20:30 CST)
- Re: [AMBER] CHARMM psf file to Amber prmtop file xmzpzengs (Wed Dec 23 2009 - 10:40:28 CST)
- Re: Re: [AMBER] NEB-error xmzpzengs (Wed Dec 23 2009 - 10:44:36 CST)
- Re: Re: [AMBER] NEB-error Carlos Simmerling (Wed Dec 23 2009 - 10:46:59 CST)
- [AMBER] How to put another 10 ligands into the simulation system? Chih-Ying Lin (Wed Dec 23 2009 - 10:51:23 CST)
- Re: [AMBER] CHARMM psf file to Amber prmtop file Jason Swails (Wed Dec 23 2009 - 14:32:11 CST)
- [AMBER] iron in prepi file generation for heme Donald Keidel (Wed Dec 23 2009 - 16:27:10 CST)
- [AMBER] Adding single distance restraint Adler, Marc (Wed Dec 23 2009 - 20:00:35 CST)
- Re: [AMBER] CHARMM psf file to Amber prmtop file David A. Case (Wed Dec 23 2009 - 20:39:24 CST)
- Re: [AMBER] Van der Waals and electrostatic Forces David A. Case (Wed Dec 23 2009 - 20:56:50 CST)
- Re: [AMBER] Adding single distance restraint Jason Swails (Wed Dec 23 2009 - 21:11:48 CST)
- [AMBER] How to put another 10 ligands into the simulation system? Chih-Ying Lin (Wed Dec 23 2009 - 22:00:02 CST)
- [AMBER] SQM and AMBER :again Jio M (Wed Dec 23 2009 - 23:18:37 CST)
- [AMBER] OE and CG types Jio M (Thu Dec 24 2009 - 03:26:43 CST)
- Re: [AMBER] OE and CG types Jason Swails (Thu Dec 24 2009 - 06:46:35 CST)
- Re: [AMBER] OE and CG types Jio M (Thu Dec 24 2009 - 09:18:31 CST)
- Re: [AMBER] OE and CG types Carlos Simmerling (Thu Dec 24 2009 - 09:38:24 CST)
- Re: [AMBER] How to put another 10 ligands into the simulation system? David A. Case (Thu Dec 24 2009 - 11:17:11 CST)
- Re: [AMBER] iron in prepi file generation for heme David A. Case (Thu Dec 24 2009 - 11:27:07 CST)
- RE: [AMBER] CHARMM psf file to Amber prmtop file Ross Walker (Thu Dec 24 2009 - 17:11:36 CST)
- RE: [AMBER] using sqm from AmberTools 1.3 Ross Walker (Thu Dec 24 2009 - 17:17:47 CST)
- [AMBER] implicit solvent MD with fixed residues Hakan Gunaydin (Thu Dec 24 2009 - 17:43:13 CST)
- [AMBER] RE: Amber question Ross Walker (Thu Dec 24 2009 - 17:44:54 CST)
- [AMBER] a problem in building oligosaccharides using LEaP Song Lin (Thu Dec 24 2009 - 20:12:10 CST)
- [AMBER] MMGBSA error Zhongjie Liang (Fri Dec 25 2009 - 00:59:16 CST)
- Re: [AMBER] OE and CG types Jio M (Fri Dec 25 2009 - 01:29:19 CST)
- [AMBER] FW: how to change velocities balaji nagarajan (Fri Dec 25 2009 - 04:23:57 CST)
- Re: [AMBER] FW: how to change velocities Carlos Simmerling (Fri Dec 25 2009 - 06:13:44 CST)
- Re: [AMBER] OE and CG types Jason Swails (Fri Dec 25 2009 - 06:32:03 CST)
- Re: [AMBER] MMGBSA error Jason Swails (Fri Dec 25 2009 - 07:28:15 CST)
- [AMBER] a question about ptraj qiaoyan (Fri Dec 25 2009 - 07:58:44 CST)
- [AMBER] PQR files s. Bill (Fri Dec 25 2009 - 08:38:36 CST)
- Re: [AMBER] PQR files Jason Swails (Fri Dec 25 2009 - 10:57:51 CST)
- Re: [AMBER] PQR files s. Bill (Fri Dec 25 2009 - 12:27:22 CST)
- Re: [AMBER] implicit solvent MD with fixed residues David A. Case (Fri Dec 25 2009 - 14:22:31 CST)
- Re: [AMBER] MMGBSA error David A. Case (Fri Dec 25 2009 - 16:17:26 CST)
- 答复: [AMBER] MMGBSA error Zhongjie Liang (Fri Dec 25 2009 - 22:30:00 CST)
- RE: [AMBER] FW: how to change velocities balaji nagarajan (Sat Dec 26 2009 - 00:02:58 CST)
- [AMBER] heating system in NEB balaji nagarajan (Sat Dec 26 2009 - 05:29:35 CST)
- [AMBER] preparation of small molecule libraries with most probable conformations using Amber Andrew Voronkov (Sat Dec 26 2009 - 05:38:09 CST)
- Re: [AMBER] FW: how to change velocities Carlos Simmerling (Sat Dec 26 2009 - 07:26:17 CST)
- [AMBER] reg.changing velocity balaji nagarajan (Sat Dec 26 2009 - 12:47:10 CST)
- Re: [AMBER] OE and CG types Dean Cuebas (Sat Dec 26 2009 - 19:10:06 CST)
- Re: [AMBER] reg.changing velocity David A. Case (Sat Dec 26 2009 - 21:01:18 CST)
- [AMBER] neb error while heating balaji nagarajan (Sat Dec 26 2009 - 21:09:00 CST)
- [AMBER] .rst file error ZhaoLei (Sun Dec 27 2009 - 08:46:37 CST)
- [AMBER] coarse grained Francesco Pietra (Sun Dec 27 2009 - 14:36:02 CST)
- RE: [AMBER] .rst file error ZhaoLei (Sun Dec 27 2009 - 20:37:57 CST)
- RE: [AMBER] .rst file error ZhaoLei (Sun Dec 27 2009 - 21:09:24 CST)
- [AMBER] ERROR: Could not read coords from {filename} Paul Brandt (Sun Dec 27 2009 - 22:14:50 CST)
- [AMBER] problem in installing amber tools on Mac OSX 10.6 Chun-Wei Pao (Mon Dec 28 2009 - 01:54:26 CST)
- Re: [AMBER] .rst file error Jia Xu (Mon Dec 28 2009 - 02:00:57 CST)
- [AMBER] About APBS radiopt Youn Kyeung Lee (Mon Dec 28 2009 - 04:12:07 CST)
- RE: [AMBER] .rst file error ZhaoLei (Mon Dec 28 2009 - 04:36:17 CST)
- Re: [AMBER] ERROR: Could not read coords from {filename} case (Mon Dec 28 2009 - 07:00:34 CST)
- Re: [AMBER] problem in installing amber tools on Mac OSX 10.6 David Watson (Mon Dec 28 2009 - 07:06:30 CST)
- Re: [AMBER] problem in installing amber tools on Mac OSX 10.6 case (Mon Dec 28 2009 - 07:07:48 CST)
- RE: [AMBER] ERROR: Could not read coords from {filename} ZhaoLei (Mon Dec 28 2009 - 08:12:54 CST)
- Re: [AMBER] ERROR: Could not read coords from {filename} case (Mon Dec 28 2009 - 08:57:11 CST)
- [AMBER] NEB-NAN error balaji nagarajan (Mon Dec 28 2009 - 09:16:43 CST)
- Re: [AMBER] About APBS radiopt Robert Konecny (Mon Dec 28 2009 - 09:43:18 CST)
- Re: [AMBER] .rst file error Jason Swails (Mon Dec 28 2009 - 09:44:38 CST)
- Re: [AMBER] neb error while heating Carlos Simmerling (Mon Dec 28 2009 - 11:34:56 CST)
- Re: [AMBER] OE and CG types Carlos Simmerling (Mon Dec 28 2009 - 11:42:41 CST)
- RE: [AMBER] ERROR: Could not read coords from {filename} ZhaoLei (Mon Dec 28 2009 - 19:34:29 CST)
- RE: [AMBER] .rst file error ZhaoLei (Mon Dec 28 2009 - 19:37:40 CST)
- Re: [AMBER] ERROR: Could not read coords from {filename} Carlos Simmerling (Mon Dec 28 2009 - 20:04:27 CST)
- Re: [AMBER] .rst file error Jason Swails (Mon Dec 28 2009 - 20:09:04 CST)
- RE: [AMBER] .rst file error ZhaoLei (Mon Dec 28 2009 - 20:57:34 CST)
- RE: [AMBER] ERROR: Could not read coords from {filename} ZhaoLei (Mon Dec 28 2009 - 20:58:53 CST)
- [AMBER] mpirun error Vijay Manickam Achari (Mon Dec 28 2009 - 21:00:11 CST)
- RE: [AMBER] ERROR: Could not read coords from {filename} Paul Brandt (Tue Dec 29 2009 - 03:46:55 CST)
- [AMBER] nab installation Lixia Jin Day (Tue Dec 29 2009 - 11:32:37 CST)
- Re: [AMBER] using sqm from AmberTools 1.3 Alan (Tue Dec 29 2009 - 11:35:06 CST)
- [AMBER] can I install amber11 on a windowsPC under cygwin? Lixia Jin Day (Tue Dec 29 2009 - 12:06:30 CST)
- Re: [AMBER] sqm x mopac in AmberTools 1.3 Alan (Tue Dec 29 2009 - 12:49:26 CST)
- Re: [AMBER] nab installation case (Tue Dec 29 2009 - 13:26:35 CST)
- Re: [AMBER] using sqm from AmberTools 1.3 David Watson (Tue Dec 29 2009 - 13:34:28 CST)
- Re: [AMBER] using sqm from AmberTools 1.3 case (Tue Dec 29 2009 - 13:36:21 CST)
- Re: [AMBER] can I install amber11 on a windowsPC under cygwin? Jason Swails (Tue Dec 29 2009 - 13:42:34 CST)
- Re: [AMBER] can I install amber11 on a windowsPC under cygwin? Mengjuei Hsieh (Tue Dec 29 2009 - 13:44:06 CST)
- Re: [AMBER] can I install amber11 on a windowsPC under cygwin? case (Tue Dec 29 2009 - 13:44:18 CST)
- Re: [AMBER] sqm x mopac in AmberTools 1.3 case (Tue Dec 29 2009 - 13:49:26 CST)
- Re: [AMBER] sqm x mopac in AmberTools 1.3 Alan (Tue Dec 29 2009 - 13:52:44 CST)
- Re: [AMBER] using sqm from AmberTools 1.3 Alan (Tue Dec 29 2009 - 14:10:56 CST)
- [AMBER] sleap in AmberTools 1.3 is not working anymore for me Alan (Tue Dec 29 2009 - 14:27:57 CST)
- Re: [AMBER] using sqm from AmberTools 1.3 case (Tue Dec 29 2009 - 15:01:18 CST)
- Re: [AMBER] sleap in AmberTools 1.3 is not working anymore for me David Watson (Tue Dec 29 2009 - 15:02:05 CST)
- Re: [AMBER] can I install amber11 on a windowsPC under cygwin? Bill Ross (Tue Dec 29 2009 - 15:05:07 CST)
- Re: [AMBER] sleap in AmberTools 1.3 is not working anymore for me Alan (Tue Dec 29 2009 - 15:47:52 CST)
- Re: [AMBER] can I install amber11 on a windowsPC under cygwin? Jason Swails (Tue Dec 29 2009 - 17:08:38 CST)
- Re: [AMBER] can I install amber11 on a windowsPC under cygwin? case (Tue Dec 29 2009 - 17:36:46 CST)
- Re: [AMBER] sleap in AmberTools 1.3 is not working anymore for me case (Tue Dec 29 2009 - 21:40:26 CST)
- Re: [AMBER] OE and CG types Jio M (Tue Dec 29 2009 - 22:18:51 CST)
- [AMBER] Tests to check for proper MMPBSA.py installation RANAJIT SHINDE (Wed Dec 30 2009 - 06:15:48 CST)
- Re: [AMBER] Tests to check for proper MMPBSA.py installation case (Wed Dec 30 2009 - 08:23:57 CST)
- [AMBER] exchange attempt in REMD zgong.hust (Wed Dec 30 2009 - 20:34:21 CST)
- Re: [AMBER] exchange attempt in REMD Carlos Simmerling (Wed Dec 30 2009 - 21:09:02 CST)
- [AMBER] Zinc parameters? xuemeiwang1103 (Wed Dec 30 2009 - 21:37:21 CST)
- Re: Re: [AMBER] exchange attempt in REMD zgong.hust (Wed Dec 30 2009 - 22:22:54 CST)
- [AMBER] hbond analysis qiaoyan (Thu Dec 31 2009 - 02:40:22 CST)
- Re: Re: [AMBER] exchange attempt in REMD Carlos Simmerling (Thu Dec 31 2009 - 09:50:24 CST)
- Re: [AMBER] Zinc parameters? Ray Luo, Ph.D. (Thu Dec 31 2009 - 20:11:45 CST)
- Re: [AMBER] Zinc parameters? vhakkim boy (Thu Dec 31 2009 - 22:56:50 CST)
Last message date: Thu Dec 31 2009 - 22:57:46 CST
Archived on: Thu Dec 31 2009 - 22:58:33 CST
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