AMBER Archive (2009)

Subject: Re: [AMBER] distance-dependent dielectric constant minimization

From: case (case_at_biomaps.rutgers.edu)
Date: Tue Dec 01 2009 - 06:48:32 CST

On Tue, Dec 01, 2009, Rilei Yu wrote:
>
> Thanks for your remind, I went back and read the manual again it
> just gives me a very brief introduce as" Dielectric multiplicative
> constant for the electrostatic interactions. Default is 1.0. Please
> note this is NOT related to dielectric constants for generalized
> Born simulations.". After read, I still do not know how to run the
> distance-dependent dielectric constant minimization. I ever read similar
> paper people did such minimization for some special purpose. But they
> never said how they did it.

Sorry, I haven't used a distance-dependent dielectric in many years. Look
at the eedmeth variable, (and be sure that this is what you really want to
do--it is no longer in common use.)

...dac

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