AMBER Archive (2009)

Subject: Re: [AMBER] Amber 10 installation: /bin/sh: ./Makelist: not found

From: Diego Javier Alonso de Armiņo (diegoarmino_at_gmail.com)
Date: Fri Dec 04 2009 - 06:09:04 CST

Jason,

Thanks a million! That worked perfectly. I can't believe it was so simple!
Thank you very much!

Diego Alonso de Armiņo

2009/12/3 Jason Swails <jason.swails_at_gmail.com>

> Your installation is crashing trying to run Makelist in $AMBERHOME/src/lib
> . This is a script written in csh. csh is not installed by default on
> ubuntu systems (at least not up through 9.04). you can install this with
> aptitude.
>
> Good luck!
> Jason
>
> 2009/12/3 Diego Javier Alonso de Armiņo <diegoarmino_at_gmail.com>
>
> > Hi everyone!
> >
> > I'm running Ubuntu Karmic on an Intel Core i7 computer. I already
> succeded
> > in compiling sander using Intel compilers(./configure_amber ifort; make
> > serial). But when I try to compile sander in parallel with openmpi
> > (compiled
> > with Intel compilers), using the following code,
> >
> > $ ./configure_amber -openmpi ifort
> >
> > (...everything goes fine...)
> >
> > $ make parallel
> >
> > (...lots of output..)
> > cpp -traditional -I/home/diego/progs/openmpi/include -P -DBINTRAJ -DMPI
> > addspace_atm1st.f > _addspace_atm1st.f
> > /home/diego/progs/openmpi/bin/mpif90 -c -w95 -vec_report0 -mp1 -O0 -o
> > addspace_atm1st.o _addspace_atm1st.f
> > cd ../lib; ./Makelist ../lib/random.o ../lib/mexit.o ../lib/nxtsec.o
> > /bin/sh: ./Makelist: not found
> > make[1]: *** [libobj] Error 127
> > make[1]: se sale del directorio `/home/diego/progs/amber10/src/addles'
> > make: *** [parallel] Error 2
> >
> > I got the same error using gfortran (and the correspondent
> > gfortran-compiled
> > openmpi). I think it might have something to do with Karmic, as I
> compiled
> > Amber succesfully using gnu compilers in Hardy.
> >
> > I know this is going to sound a bit too dramatic, but...
> > Please, help me! I don't know what else to do!
> >
> >
> > Thank you very much for your time in advance.
> >
> > Diego Alonso de Armiņo
> > _______________________________________________
> > AMBER mailing list
> > AMBER_at_ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
> >
>
>
>
> --
> ---------------------------------------
> Jason M. Swails
> Quantum Theory Project,
> University of Florida
> Ph.D. Graduate Student
> 352-392-4032
> _______________________________________________
> AMBER mailing list
> AMBER_at_ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
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