AMBER Archive (2009)

Subject: [AMBER] Inorganic Phosphate Parameters

From: Cihan Aydin (cihan.aydin_at_umassmed.edu)
Date: Fri Dec 18 2009 - 14:19:21 CST

Greetings AMBER community,

It may sound like a silly question but I am trying to simulate a protein
with an inorganic phosphate (PO4-3) and I seem to cannot get parameters
for the inorganic phosphate...

1- Is PO4-3 parameters available in AMBER? If available, how should I
modift my pdb file to get leap to interpret correctly?

2- If PO4-3 parameters are not available, does anyone know anyplace that
I can look for them?

Thank you,

Cihan

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