AMBER Archive (2009)

Subject: [AMBER] Custom RNA modeling

From: Wallace Kunin (kunin_at_marshall.edu)
Date: Tue Dec 08 2009 - 14:27:55 CST

I am looking to create models of RNA with sequencing that resembles tRNA.
How do I create the pdb file I need or use leap to do this? I have tried
using the sequence command but that does not allow for the RNA to take on
the L shape that tRNA normally does but it just sequences bases in a wavy
line pattern. I am guessing I need leap or nab to do this? Any help would
be appreciated on how to do this or if I need to supply more information,
let me know.
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