AMBER Archive (2009)

Subject: Re: [AMBER] using sqm from AmberTools 1.3

• Previous message: Alan: "[AMBER] sleap in AmberTools 1.3 is not working anymore for me"
• In reply to: Alan: "Re: [AMBER] using sqm from AmberTools 1.3"
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On Tue, Dec 29, 2009, Alan wrote:

> Dear Case, where did you see -4 for the ligand? Now it would make sense in
> face what I know.

Just looking at the structure: the two phosphodiesters would each have a
charge of -1, and the terminal phospohate (with no protons, as shown in the
pdb file) would have a charge of -2.

...dac

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• Previous message: Alan: "[AMBER] sleap in AmberTools 1.3 is not working anymore for me"
• In reply to: Alan: "Re: [AMBER] using sqm from AmberTools 1.3"
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