AMBER Archive (2009)

Subject: Re: [AMBER] Amber 10 installation: /bin/sh: ./Makelist: not found

From: Jason Swails (jason.swails_at_gmail.com)
Date: Thu Dec 03 2009 - 20:55:09 CST

Your installation is crashing trying to run Makelist in $AMBERHOME/src/lib
. This is a script written in csh. csh is not installed by default on
ubuntu systems (at least not up through 9.04). you can install this with
aptitude.

Good luck!
Jason

2009/12/3 Diego Javier Alonso de Armiņo <diegoarmino_at_gmail.com>

> Hi everyone!
>
> I'm running Ubuntu Karmic on an Intel Core i7 computer. I already succeded
> in compiling sander using Intel compilers(./configure_amber ifort; make
> serial). But when I try to compile sander in parallel with openmpi
> (compiled
> with Intel compilers), using the following code,
>
> $ ./configure_amber -openmpi ifort
>
> (...everything goes fine...)
>
> $ make parallel
>
> (...lots of output..)
> cpp -traditional -I/home/diego/progs/openmpi/include -P -DBINTRAJ -DMPI
> addspace_atm1st.f > _addspace_atm1st.f
> /home/diego/progs/openmpi/bin/mpif90 -c -w95 -vec_report0 -mp1 -O0 -o
> addspace_atm1st.o _addspace_atm1st.f
> cd ../lib; ./Makelist ../lib/random.o ../lib/mexit.o ../lib/nxtsec.o
> /bin/sh: ./Makelist: not found
> make[1]: *** [libobj] Error 127
> make[1]: se sale del directorio `/home/diego/progs/amber10/src/addles'
> make: *** [parallel] Error 2
>
> I got the same error using gfortran (and the correspondent
> gfortran-compiled
> openmpi). I think it might have something to do with Karmic, as I compiled
> Amber succesfully using gnu compilers in Hardy.
>
> I know this is going to sound a bit too dramatic, but...
> Please, help me! I don't know what else to do!
>
>
> Thank you very much for your time in advance.
>
> Diego Alonso de Armiņo
> _______________________________________________
> AMBER mailing list
> AMBER_at_ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
> 

-- 
---------------------------------------
Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Graduate Student
352-392-4032
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