AMBER Archive (2009) - Jul 2009 By DateMost recent messages
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Starting: Wed Jul 01 2009 - 04:17:51 CDT
Ending: Fri Jul 31 2009 - 22:33:10 CDT
- [AMBER] antechamber R. A. (Wed Jul 01 2009 - 04:17:51 CDT)
- [AMBER] antechamber R. A. (Wed Jul 01 2009 - 04:19:54 CDT)
- Re: [AMBER] antechamber Alan (Wed Jul 01 2009 - 06:37:40 CDT)
- Re: [AMBER] antechamber case (Wed Jul 01 2009 - 07:04:02 CDT)
- Re: [AMBER] antechamber gilbert_at_bluemarble.net (Wed Jul 01 2009 - 07:11:17 CDT)
- [AMBER] The problem of restart file Jeffrey (Wed Jul 01 2009 - 07:15:34 CDT)
- Re: [AMBER] antechamber FyD (Wed Jul 01 2009 - 07:26:39 CDT)
- Re: [AMBER] Steps for NMR structure minimization case (Wed Jul 01 2009 - 07:48:13 CDT)
- Re: [AMBER] The problem of restart file Carlos Simmerling (Wed Jul 01 2009 - 07:49:32 CDT)
- Re: [AMBER] The problem of restart file Jeffrey (Wed Jul 01 2009 - 09:07:08 CDT)
- [AMBER] amber9 in fedora10 Bala subramanian (Wed Jul 01 2009 - 09:09:15 CDT)
- Re: [AMBER] Nonstandard molecules simulated with parm99EP ? Marek Maly (Wed Jul 01 2009 - 10:47:04 CDT)
- Re: [AMBER] Nonstandard molecules simulated with parm99EP ? Marek Maly (Wed Jul 01 2009 - 11:02:29 CDT)
- RE: [AMBER] amber9 in fedora10 Ross Walker (Wed Jul 01 2009 - 11:36:33 CDT)
- [AMBER] pmemd/bintraj and ifort 10.1.0.21 Peter Varnai (Wed Jul 01 2009 - 13:28:30 CDT)
- Re: [AMBER] pmemd/bintraj and ifort 10.1.0.21 Robert Duke (Wed Jul 01 2009 - 13:54:52 CDT)
- [AMBER] default integration scheme in 7 vs. 10 Paul Brandt (Wed Jul 01 2009 - 15:48:46 CDT)
- RE: [AMBER] default integration scheme in 7 vs. 10 Ross Walker (Wed Jul 01 2009 - 16:29:12 CDT)
- Re: [AMBER] antechamber R. A. (Wed Jul 01 2009 - 19:46:19 CDT)
- Re: [AMBER] antechamber FyD (Thu Jul 02 2009 - 01:33:46 CDT)
- Re: [AMBER] amber9 in fedora10 Bala subramanian (Thu Jul 02 2009 - 02:02:54 CDT)
- Re: [AMBER] amber9 in fedora10 Bala subramanian (Thu Jul 02 2009 - 03:05:55 CDT)
- Re: [AMBER] antechamber Alan (Thu Jul 02 2009 - 05:16:55 CDT)
- Re: [AMBER] default integration scheme in 7 vs. 10 case (Thu Jul 02 2009 - 06:37:17 CDT)
- [AMBER] missing Halogen parameters (radii) for PBSA/GBSA calculations - PB Bomb in pb_aaradi(): No radius assigned for atom suhaib sh (Thu Jul 02 2009 - 08:18:05 CDT)
- Re: [AMBER] antechamber R. A. (Thu Jul 02 2009 - 19:35:42 CDT)
- »Ø¸´£º [AMBER] antechamber ÁÎÇ໪ (Thu Jul 02 2009 - 19:45:41 CDT)
- 回å¤ï¼š 回å¤ï¼š [AMBER] antechamber å»–é’åŽ (Thu Jul 02 2009 - 19:53:06 CDT)
- [AMBER] analysis of QM/MM - LCOD Aust, Susanne (Fri Jul 03 2009 - 04:51:34 CDT)
- [AMBER] MM-PBSA problem Giorgos Lamprinidis (Fri Jul 03 2009 - 08:50:36 CDT)
- Re: [AMBER] MM-PBSA problem Rubben Torella (Fri Jul 03 2009 - 08:57:09 CDT)
- [AMBER] Re: Error in REDIII FyD (Fri Jul 03 2009 - 09:59:30 CDT)
- [AMBER] H-bond vs. VdW Taufik Al-Sarraj (Fri Jul 03 2009 - 13:48:12 CDT)
- Re: [AMBER] H-bond vs. VdW FyD (Sat Jul 04 2009 - 00:01:58 CDT)
- [AMBER] calculation of the solvent accessibility Rilei Yu (Sat Jul 04 2009 - 03:54:23 CDT)
- [AMBER] Boundary Condition Problem Pepe` Falahat (Sat Jul 04 2009 - 07:10:59 CDT)
- Re: [AMBER] Boundary Condition Problem case (Sat Jul 04 2009 - 08:45:45 CDT)
- [AMBER] Leap Questions... Cihan Aydin (Sat Jul 04 2009 - 20:41:39 CDT)
- [AMBER] RED: Charge derivation of transtion state analogue manoj singh (Sun Jul 05 2009 - 01:10:57 CDT)
- [AMBER] Re: [q4md-fft] Charge calculation or non standard residue FyD (Sun Jul 05 2009 - 03:30:50 CDT)
- Re: [AMBER] RED: Charge derivation of transtion state analogue FyD (Sun Jul 05 2009 - 04:39:13 CDT)
- 回å¤ï¼š [AMBER] missing Halogen parameters (radii) for PBSA/GBSA calculations - PB Bomb in pb_aaradi(): No radius assigned for atom å»–é’åŽ (Thu Jul 02 2009 - 23:53:09 CDT)
- [AMBER] RE: question about TUTORIAL A1 Ross Walker (Sun Jul 05 2009 - 21:29:38 CDT)
- [AMBER] RE: ask for help (zn parameters) Ross Walker (Sun Jul 05 2009 - 21:56:50 CDT)
- RE: [AMBER] Leap Questions... Ross Walker (Sun Jul 05 2009 - 23:01:34 CDT)
- Re: [AMBER] RED: Charge derivation of transtion state analogue manoj singh (Mon Jul 06 2009 - 00:03:27 CDT)
- Re: [AMBER] RED: Charge derivation of transtion state analogue FyD (Mon Jul 06 2009 - 01:29:11 CDT)
- Re: [AMBER] RED: Charge derivation of transtion state analogue FyD (Mon Jul 06 2009 - 01:45:13 CDT)
- [AMBER] non standard residue Neha Gandhi (Mon Jul 06 2009 - 03:07:35 CDT)
- Re: [AMBER] MM-PBSA problem Giorgos Lamprinidis (Mon Jul 06 2009 - 03:07:14 CDT)
- [AMBER] Re: non aminoacid Residue Neha Gandhi (Mon Jul 06 2009 - 03:43:56 CDT)
- [AMBER] unable to read MM charges Vishal Maingi (Mon Jul 06 2009 - 04:32:29 CDT)
- [AMBER] need charges of FE-S cluster subarna thakur (Mon Jul 06 2009 - 05:44:05 CDT)
- Re: [AMBER] need charges of FE-S cluster case (Mon Jul 06 2009 - 07:35:19 CDT)
- Re: [AMBER] H-bond vs. VdW Cihan Aydin (Mon Jul 06 2009 - 10:13:39 CDT)
- RE: [AMBER] Re: non aminoacid Residue Ross Walker (Mon Jul 06 2009 - 11:21:44 CDT)
- [AMBER] RE: question about TUTORIAL A1 Ross Walker (Mon Jul 06 2009 - 11:58:47 CDT)
- Re: [AMBER] H-bond vs. VdW case (Mon Jul 06 2009 - 12:29:49 CDT)
- [AMBER] unsolved verbosity when running minimization albert albert (Mon Jul 06 2009 - 14:09:02 CDT)
- Re: [AMBER] unsolved verbosity when running minimization Carlos Simmerling (Mon Jul 06 2009 - 14:28:08 CDT)
- [AMBER] Directory - GAFF Parameter File? Patrick Gedeon (Mon Jul 06 2009 - 18:31:49 CDT)
- [AMBER] Re: Directory - GAFF Parameter File? Patrick Gedeon (Mon Jul 06 2009 - 18:38:57 CDT)
- [AMBER] RE: suggestions Ross Walker (Mon Jul 06 2009 - 20:01:51 CDT)
- [AMBER] Tleap input error, atom not found in residue template Brothers, Michael Charles (Mon Jul 06 2009 - 20:25:00 CDT)
- Re: [AMBER] RE: suggestions Cihan Aydin (Mon Jul 06 2009 - 20:29:22 CDT)
- [AMBER] unable to read MM charges (no reply yet) Vishal Maingi (Mon Jul 06 2009 - 22:32:07 CDT)
- RE: [AMBER] Tleap input error, atom not found in residue template Ross Walker (Mon Jul 06 2009 - 23:28:46 CDT)
- Re: [AMBER] non standard residue FyD (Tue Jul 07 2009 - 02:50:09 CDT)
- [AMBER] Principle Questions s_bill36_at_yahoo.co.uk (Tue Jul 07 2009 - 02:50:53 CDT)
- [AMBER] DCCM Raja Pandian (Tue Jul 07 2009 - 06:05:20 CDT)
- [AMBER] Steered MD---more than one pair of atoms Hlengisizwe Ndlovu (Tue Jul 07 2009 - 08:27:59 CDT)
- [AMBER] Zinc ion, help Mahmoud A. A. Ibrahim (Tue Jul 07 2009 - 09:26:48 CDT)
- RE: [AMBER] Tleap input error, atom not found in residue template Brothers, Michael Charles (Tue Jul 07 2009 - 11:08:00 CDT)
- [AMBER] rdparm bug? Paul Mortenson (Tue Jul 07 2009 - 11:29:44 CDT)
- [AMBER] QMMM outupts Myeong Lee (Tue Jul 07 2009 - 12:13:27 CDT)
- RE: [AMBER] Principle Questions Ross Walker (Tue Jul 07 2009 - 18:42:42 CDT)
- AW: [AMBER] Steered MD---more than one pair of atoms Aust, Susanne (Wed Jul 08 2009 - 01:47:56 CDT)
- [AMBER] amber10 installation problem Lan JIN (Wed Jul 08 2009 - 01:49:05 CDT)
- [AMBER] Installing of amber10 Rilei Yu (Wed Jul 08 2009 - 03:34:24 CDT)
- [AMBER] installing of amber10 problem Rilei Yu (Wed Jul 08 2009 - 03:47:13 CDT)
- [AMBER] MPI process terminated unexpectedly forrtl: error (69): process interrupted (SIGINT) Andrew Voronkov (Wed Jul 08 2009 - 04:39:03 CDT)
- Re: [AMBER] Zinc ion, help FyD (Wed Jul 08 2009 - 04:43:26 CDT)
- [AMBER] Is rmsd ~ 3 A reasonable for a 4ns simulation? Catein Catherine (Wed Jul 08 2009 - 04:45:41 CDT)
- [AMBER] suitable force field Jio M (Wed Jul 08 2009 - 05:06:35 CDT)
- Re: [AMBER] MPI process terminated unexpectedly forrtl: error (69): process interrupted (SIGINT) Andrew Voronkov (Wed Jul 08 2009 - 05:05:52 CDT)
- Re: [AMBER] unsolved verbosity when running minimization albert albert (Wed Jul 08 2009 - 06:10:43 CDT)
- Re: [AMBER] unsolved verbosity when running minimization Carlos Simmerling (Wed Jul 08 2009 - 06:34:20 CDT)
- Re: [AMBER] Installing of amber10 case (Wed Jul 08 2009 - 06:42:02 CDT)
- Re: [AMBER] amber10 installation problem case (Wed Jul 08 2009 - 06:56:19 CDT)
- [AMBER] ouput trajectory of only CA atom Bala subramanian (Wed Jul 08 2009 - 08:24:56 CDT)
- [AMBER] ff parameters oguz gurbulak (Wed Jul 08 2009 - 09:35:40 CDT)
- Re: [AMBER] ouput trajectory of only CA atom Carlos Simmerling (Wed Jul 08 2009 - 09:41:25 CDT)
- Re: [AMBER] ouput trajectory of only CA atom Bala subramanian (Wed Jul 08 2009 - 10:01:27 CDT)
- RE: [AMBER] MPI process terminated unexpectedly forrtl: error (69): process interrupted (SIGINT) Ross Walker (Wed Jul 08 2009 - 10:01:24 CDT)
- Re: [AMBER] ouput trajectory of only CA atom Vlad Cojocaru (Wed Jul 08 2009 - 10:07:30 CDT)
- Re: [AMBER] ouput trajectory of only CA atom Jordan Monnet (Wed Jul 08 2009 - 11:03:32 CDT)
- [AMBER] rmsd_dna balaji nagarajan (Wed Jul 08 2009 - 11:15:02 CDT)
- [AMBER] bug in antechamber David Mobley (Wed Jul 08 2009 - 11:19:12 CDT)
- [AMBER] suitable force field Jio M (Wed Jul 08 2009 - 02:14:12 CDT)
- Re: [AMBER] rmsd_dna Carlos Simmerling (Wed Jul 08 2009 - 13:21:29 CDT)
- [AMBER] MM-PBSA delphi.crg and delphi.siz Manish Kumar (Wed Jul 08 2009 - 16:29:40 CDT)
- [AMBER] Acetylate and Amidate Alison Saunders (Wed Jul 08 2009 - 17:19:44 CDT)
- Re: [AMBER] Acetylate and Amidate Carlos Simmerling (Wed Jul 08 2009 - 17:22:58 CDT)
- Re: [AMBER] Acetylate and Amidate Alison Saunders (Wed Jul 08 2009 - 17:47:59 CDT)
- Re: [AMBER] Acetylate and Amidate Bill Ross (Wed Jul 08 2009 - 18:13:09 CDT)
- RE: [AMBER] rmsd_dna balaji nagarajan (Wed Jul 08 2009 - 20:55:53 CDT)
- Re: [AMBER] amber10 installation problem Lan JIN (Wed Jul 08 2009 - 21:46:22 CDT)
- [AMBER] rmsd_ptraj balaji nagarajan (Wed Jul 08 2009 - 23:19:56 CDT)
- RE: [AMBER] rmsd_ptraj Ross Walker (Wed Jul 08 2009 - 23:35:59 CDT)
- RE: [AMBER] rmsd_ptraj balaji nagarajan (Thu Jul 09 2009 - 00:50:10 CDT)
- RE: [AMBER] rmsd_ptraj Thomas Cheatham (Thu Jul 09 2009 - 02:08:53 CDT)
- Re: [AMBER] Acetylate and Amidate Carlos Simmerling (Thu Jul 09 2009 - 06:52:28 CDT)
- [AMBER] charged or not s. Bill (Thu Jul 09 2009 - 07:33:05 CDT)
- Re: [AMBER] amber10 installation problem case (Thu Jul 09 2009 - 07:38:01 CDT)
- Re: [AMBER] ff parameters case (Thu Jul 09 2009 - 08:23:31 CDT)
- [AMBER] Antechamber prep question Andrew Olson (Thu Jul 09 2009 - 09:39:25 CDT)
- Re: [AMBER] charged or not case (Thu Jul 09 2009 - 10:10:14 CDT)
- Re: [AMBER] Antechamber prep question case (Thu Jul 09 2009 - 10:16:17 CDT)
- Re: [AMBER] Antechamber prep question Andrew Olson (Thu Jul 09 2009 - 10:22:18 CDT)
- [AMBER] Re: pls help and suggest Gustavo Seabra (Thu Jul 09 2009 - 11:14:42 CDT)
- Re: [AMBER] Antechamber prep question case (Thu Jul 09 2009 - 11:48:44 CDT)
- Re: [AMBER] QMMM outupts Gustavo Seabra (Thu Jul 09 2009 - 11:58:30 CDT)
- Re: [AMBER] Antechamber prep question Andrew Olson (Thu Jul 09 2009 - 12:00:19 CDT)
- [AMBER] reference re. determining size of timestep Paul Brandt (Thu Jul 09 2009 - 13:07:50 CDT)
- Fw: [AMBER] Re: pls help and suggest Vishal Maingi (Thu Jul 09 2009 - 13:45:21 CDT)
- Re: [AMBER] Antechamber prep question case (Thu Jul 09 2009 - 13:54:44 CDT)
- [AMBER] AMBER windows version ? Siddharth Rastogi (Thu Jul 09 2009 - 16:14:05 CDT)
- RE: [AMBER] AMBER windows version ? Ross Walker (Thu Jul 09 2009 - 17:45:49 CDT)
- Re: [AMBER] AMBER windows version ? Siddharth Rastogi (Thu Jul 09 2009 - 18:17:33 CDT)
- [AMBER] question of mm_pbsa å»–é’åŽ (Thu Jul 09 2009 - 20:49:40 CDT)
- [AMBER] Re: MM-PBSA delphi.crg and delphi.siz Manish Kumar (Thu Jul 09 2009 - 22:33:01 CDT)
- Re: [AMBER] Antechamber prep question FyD (Fri Jul 10 2009 - 00:52:12 CDT)
- Re: [AMBER] amber10 installation problem Lan JIN (Fri Jul 10 2009 - 02:41:34 CDT)
- [AMBER] unexplained blow-up at restart Sally Pias (Fri Jul 10 2009 - 03:02:42 CDT)
- Re: [AMBER] question of mm_pbsa Hannes Kopitz (Fri Jul 10 2009 - 04:36:44 CDT)
- Re: [AMBER] unexplained blow-up at restart Carlos Simmerling (Fri Jul 10 2009 - 05:55:51 CDT)
- [AMBER] Restrained backbone conformation MD simulation" Prem Prakash Pathak (Fri Jul 10 2009 - 06:27:38 CDT)
- Re: [AMBER] Restrained backbone conformation MD simulation" Carlos Simmerling (Fri Jul 10 2009 - 06:47:20 CDT)
- Re: [AMBER] Antechamber prep question gilbert_at_bluemarble.net (Fri Jul 10 2009 - 08:10:32 CDT)
- Re: [AMBER] unexplained blow-up at restart Simon Becker (Fri Jul 10 2009 - 08:24:13 CDT)
- Re: [AMBER] Antechamber prep question Andrew Olson (Fri Jul 10 2009 - 08:33:09 CDT)
- [AMBER] manganese bondi radii for mm_pbsa calculation Chunliyan (Fri Jul 10 2009 - 08:39:51 CDT)
- [AMBER] radius for Manganese ion Chunliyan (Fri Jul 10 2009 - 08:39:51 CDT)
- [AMBER] Manganese Chunliyan (Fri Jul 10 2009 - 08:39:51 CDT)
- [AMBER] Manganese bondi radii for mm/pbsa calculation Chunliyan (Fri Jul 10 2009 - 08:39:51 CDT)
- [AMBER] Manganese bondi radii Chunliyan (Fri Jul 10 2009 - 08:39:51 CDT)
- [AMBER] EPtot for Alpha-L- methyl fucose Sushil Mishra (Fri Jul 10 2009 - 08:47:26 CDT)
- Re: [AMBER] EPtot for Alpha-L- methyl fucose Carlos Simmerling (Fri Jul 10 2009 - 08:57:34 CDT)
- Re: [AMBER] EPtot for Alpha-L- methyl fucose Sushil Mishra (Fri Jul 10 2009 - 09:12:28 CDT)
- Re: [AMBER] Re: MM-PBSA delphi.crg and delphi.siz suhaib sh (Fri Jul 10 2009 - 09:17:52 CDT)
- Re: [AMBER] Antechamber prep question FyD (Fri Jul 10 2009 - 10:24:08 CDT)
- [AMBER] Regarding Running QM/MM NEB with PM3-PDDG using Amber10 Keith Van Nostrand (Fri Jul 10 2009 - 10:27:12 CDT)
- Re: [AMBER] unexplained blow-up at restart Sally Pias (Fri Jul 10 2009 - 10:29:01 CDT)
- [AMBER] implicit solvent (GB version2) MD simulation workalemahu berhanu (Fri Jul 10 2009 - 10:53:47 CDT)
- Re: [AMBER] implicit solvent (GB version2) MD simulation Carlos Simmerling (Fri Jul 10 2009 - 10:57:57 CDT)
- [AMBER] Need help for PMEMD 10 installation Jun Dong (Fri Jul 10 2009 - 11:05:49 CDT)
- [AMBER] problem with energy calculations Thomas Lake (Fri Jul 10 2009 - 11:13:55 CDT)
- Re: [AMBER] charges in topology file Jeffrey (Fri Jul 10 2009 - 11:20:01 CDT)
- RE: [AMBER] Regarding Running QM/MM NEB with PM3-PDDG using Amber10 Ross Walker (Fri Jul 10 2009 - 11:21:11 CDT)
- RE: [AMBER] Need help for PMEMD 10 installation Ross Walker (Fri Jul 10 2009 - 11:26:29 CDT)
- Re: [AMBER] unexplained blow-up at restart Sally Pias (Fri Jul 10 2009 - 11:31:59 CDT)
- Re: [AMBER] Re: MM-PBSA delphi.crg and delphi.siz Ray Luo (Fri Jul 10 2009 - 11:32:18 CDT)
- TMD: was: Re: [AMBER] charges in topology file Carlos Simmerling (Fri Jul 10 2009 - 11:36:30 CDT)
- Re: [AMBER] question of mm_pbsa Ray Luo (Fri Jul 10 2009 - 11:47:12 CDT)
- Re: [AMBER] unexplained blow-up at restart Carlos Simmerling (Fri Jul 10 2009 - 12:02:39 CDT)
- Re: [AMBER] unexplained blow-up at restart Sally Pias (Fri Jul 10 2009 - 12:20:27 CDT)
- RE: [AMBER] Need help for PMEMD 10 installation Jun Dong (Fri Jul 10 2009 - 12:25:03 CDT)
- Re: [AMBER] unexplained blow-up at restart Carlos Simmerling (Fri Jul 10 2009 - 12:25:10 CDT)
- Re: [AMBER] problem with energy calculations Carlos Simmerling (Fri Jul 10 2009 - 12:25:56 CDT)
- Re: [AMBER] unexplained blow-up at restart Carlos Simmerling (Fri Jul 10 2009 - 12:58:15 CDT)
- [AMBER] Peptide bond broken Syed Tarique Moin (Fri Jul 10 2009 - 13:19:02 CDT)
- [AMBER] calculation of binding energy for lectin and fucuse.. Sushil Mishra (Fri Jul 10 2009 - 13:26:20 CDT)
- RE: [AMBER] Need help for PMEMD 10 installation Ross Walker (Fri Jul 10 2009 - 13:52:13 CDT)
- Re: [AMBER] unexplained blow-up at restart Sally Pias (Fri Jul 10 2009 - 13:59:24 CDT)
- [AMBER] ligand/protein minimization Andrew Olson (Fri Jul 10 2009 - 16:00:26 CDT)
- [AMBER] R.E.D intra-mcc and reorientation Ganesh Krishnan (Fri Jul 10 2009 - 17:00:35 CDT)
- [AMBER] Syntax Bellymask Brothers, Michael Charles (Fri Jul 10 2009 - 18:59:01 CDT)
- 回å¤ï¼š [AMBER] question of mm_pbsa å»–é’åŽ (Fri Jul 10 2009 - 19:50:55 CDT)
- [AMBER] TMD: solvation and equilibration questions Jeffrey (Fri Jul 10 2009 - 20:07:55 CDT)
- 回å¤ï¼š [AMBER] question of mm_pbsa å»–é’åŽ (Fri Jul 10 2009 - 20:22:25 CDT)
- Re: [AMBER] Peptide bond broken FyD (Sat Jul 11 2009 - 01:58:06 CDT)
- Re: [AMBER] R.E.D intra-mcc and reorientation FyD (Sat Jul 11 2009 - 03:05:56 CDT)
- [AMBER] How to fix specific atoms? (not residue) Myeong Lee (Sat Jul 11 2009 - 06:46:06 CDT)
- Re: [AMBER] How to fix specific atoms? (not residue) Tom Joseph (Sat Jul 11 2009 - 17:01:04 CDT)
- Re: [AMBER] R.E.D intra-mcc and reorientation Ganesh Krishnan (Sat Jul 11 2009 - 17:56:18 CDT)
- [AMBER] problem with the energetics of the system Mahmoud A. A. Ibrahim (Sat Jul 11 2009 - 18:23:13 CDT)
- Re: [AMBER] problem with the energetics of the system Ross Walker (Sat Jul 11 2009 - 18:52:42 CDT)
- 回å¤ï¼š [AMBER] question of mm_pbsa å»–é’åŽ (Sat Jul 11 2009 - 19:03:33 CDT)
- Re: [AMBER] problem with the energetics of the system Mahmoud A. A. Ibrahim (Sun Jul 12 2009 - 05:37:37 CDT)
- RE: [AMBER] problem with energy calculations Lake, Thomas (Sun Jul 12 2009 - 08:35:33 CDT)
- Re: [AMBER] problem with energy calculations Carlos Simmerling (Sun Jul 12 2009 - 08:42:35 CDT)
- [AMBER] amber dihedral format s. Bill (Sun Jul 12 2009 - 09:05:23 CDT)
- Re: [AMBER] problem with energy calculations Thomas Lake (Sun Jul 12 2009 - 09:10:58 CDT)
- Re: [AMBER] problem with energy calculations Carlos Simmerling (Sun Jul 12 2009 - 09:15:39 CDT)
- [AMBER] help needed for HID s. Bill (Sun Jul 12 2009 - 13:16:08 CDT)
- Re: [AMBER] help needed for HID Marius Retegan (Sun Jul 12 2009 - 13:24:40 CDT)
- [AMBER] Amber10, Serial compilation with ifort Aldo Humberto Romero (Sun Jul 12 2009 - 15:57:40 CDT)
- RE: [AMBER] Amber10, Serial compilation with ifort Ross Walker (Sun Jul 12 2009 - 16:41:07 CDT)
- Re: [AMBER] amber dihedral format case (Sun Jul 12 2009 - 16:49:12 CDT)
- Re: [AMBER] ligand/protein minimization case (Sun Jul 12 2009 - 21:32:29 CDT)
- Re: [AMBER] Peptide bond broken case (Sun Jul 12 2009 - 21:35:35 CDT)
- [AMBER] ptraj mask selection Patrick Gedeon (Sun Jul 12 2009 - 22:45:56 CDT)
- Re: [AMBER] Peptide bond broken Shubhra Gupta (Sun Jul 12 2009 - 23:17:31 CDT)
- Re: [AMBER] unexplained blow-up at restart Sally Pias (Mon Jul 13 2009 - 02:01:29 CDT)
- Re: [AMBER] unexplained blow-up at restart Carlos Simmerling (Mon Jul 13 2009 - 05:24:23 CDT)
- Re: [AMBER] Peptide bond broken Syed Tarique Moin (Mon Jul 13 2009 - 08:20:02 CDT)
- [AMBER] Exclamation marks in trajectory Hugh Heldenbrand (Mon Jul 13 2009 - 10:16:26 CDT)
- Re: [AMBER] ligand/protein minimization Andrew Olson (Mon Jul 13 2009 - 10:53:11 CDT)
- Re: [AMBER] unexplained blow-up at restart Sally Pias (Mon Jul 13 2009 - 11:11:08 CDT)
- Re: [AMBER] ligand/protein minimization case (Mon Jul 13 2009 - 11:29:06 CDT)
- Re: [AMBER] unexplained blow-up at restart case (Mon Jul 13 2009 - 11:51:46 CDT)
- [AMBER] Re: reference re. size of dt case (Mon Jul 13 2009 - 11:56:46 CDT)
- [AMBER] Trouble saving amberparm files Alison Saunders (Mon Jul 13 2009 - 12:07:28 CDT)
- Re: [AMBER] ligand/protein minimization Andrew Olson (Mon Jul 13 2009 - 12:10:18 CDT)
- [AMBER] (no subject) Beale, John (Mon Jul 13 2009 - 12:35:46 CDT)
- [AMBER] Re: bug in antechamber David Mobley (Mon Jul 13 2009 - 12:41:01 CDT)
- Re: [AMBER] ptraj mask selection Jianyin Shao (Mon Jul 13 2009 - 12:57:23 CDT)
- RE: [AMBER] Need help for PMEMD 10 installation Jun Dong (Mon Jul 13 2009 - 13:10:34 CDT)
- Re: [AMBER] ptraj mask selection case (Mon Jul 13 2009 - 13:10:46 CDT)
- RE: [AMBER] Exclamation marks in trajectory Ross Walker (Mon Jul 13 2009 - 13:13:17 CDT)
- Re: [AMBER] Exclamation marks in trajectory Hugh Heldenbrand (Mon Jul 13 2009 - 13:52:37 CDT)
- Re: [AMBER] ptraj mask selection Jianyin Shao (Mon Jul 13 2009 - 14:02:03 CDT)
- RE: [AMBER] Need help for PMEMD 10 installation Ross Walker (Mon Jul 13 2009 - 14:18:26 CDT)
- RE: [AMBER] Exclamation marks in trajectory Ross Walker (Mon Jul 13 2009 - 14:20:37 CDT)
- Re: [AMBER] ptraj mask selection Patrick Gedeon (Mon Jul 13 2009 - 14:58:18 CDT)
- Re: [AMBER] Trouble saving amberparm files Tom Joseph (Mon Jul 13 2009 - 15:16:27 CDT)
- Re: [AMBER] help needed for HID FyD (Mon Jul 13 2009 - 15:27:13 CDT)
- [AMBER] Problem with amber9 installation moitrayee_at_mbu.iisc.ernet.in (Mon Jul 13 2009 - 15:31:18 CDT)
- [AMBER] GAFF and NME, ACE terminal res Jio M (Mon Jul 13 2009 - 15:51:06 CDT)
- Re: [AMBER] Trouble saving amberparm files Alison Saunders (Mon Jul 13 2009 - 16:06:12 CDT)
- Re: [AMBER] Trouble saving amberparm files Tom Joseph (Mon Jul 13 2009 - 16:13:14 CDT)
- Re: [AMBER] Trouble saving amberparm files Tom Joseph (Mon Jul 13 2009 - 16:14:39 CDT)
- Re: [AMBER] Trouble saving amberparm files Alison Saunders (Mon Jul 13 2009 - 16:43:40 CDT)
- RE: [AMBER] Problem with amber9 installation Ross Walker (Mon Jul 13 2009 - 22:34:54 CDT)
- [AMBER] Re: Request to mailing list AMBER rejected E.M. (Mon Jul 13 2009 - 22:37:46 CDT)
- Re: [AMBER] non standard residue FyD (Tue Jul 14 2009 - 01:47:00 CDT)
- RE: [AMBER] Problem with amber9 installation moitrayee_at_mbu.iisc.ernet.in (Tue Jul 14 2009 - 02:02:39 CDT)
- Re: [AMBER] Need help for PMEMD 10 installation Giorgos Lamprinidis (Tue Jul 14 2009 - 02:29:09 CDT)
- Re: [AMBER] GAFF and NME, ACE terminal res FyD (Tue Jul 14 2009 - 02:40:00 CDT)
- [AMBER] mpirun noticed that process rank 1 ... on signal 1 (Hangup). Naser Alijabbari (Tue Jul 14 2009 - 05:41:39 CDT)
- [AMBER] Re: mpirun noticed that process rank 1 ... on signal 1 (Hangup). Naser Alijabbari (Tue Jul 14 2009 - 05:49:14 CDT)
- Re: [AMBER] Need help for PMEMD 10 installation Robert Duke (Tue Jul 14 2009 - 06:50:26 CDT)
- [AMBER] RE: pmemd parallel Ross Walker (Tue Jul 14 2009 - 07:24:06 CDT)
- RE: [AMBER] Re: mpirun noticed that process rank 1 ... on signal 1 (Hangup). Ross Walker (Tue Jul 14 2009 - 07:33:49 CDT)
- [AMBER] Could not find bond parameter for O2 - ca Yogesh Aher (Tue Jul 14 2009 - 07:53:35 CDT)
- [AMBER] Molecular Modeling Workshop and Model(l)ing'09 in Erlangen, Germany Harald Lanig (Tue Jul 14 2009 - 09:02:16 CDT)
- [AMBER] Holding ligand rigid for minimization Andrew Olson (Tue Jul 14 2009 - 10:14:38 CDT)
- [AMBER] Holding ligand rigid for minimization Andrew Olson (Tue Jul 14 2009 - 10:23:01 CDT)
- Re: [AMBER] Re: mpirun noticed that process rank 1 ... on signal 1 (Hangup). Naser Alijabbari (Tue Jul 14 2009 - 11:30:55 CDT)
- Re: [AMBER] Holding ligand rigid for minimization Andrew Olson (Tue Jul 14 2009 - 13:23:31 CDT)
- [AMBER] PMEMD in a Cygwin Environment Hopkins, Robert (Tue Jul 14 2009 - 14:48:41 CDT)
- Re: [AMBER] non standard residue FyD (Tue Jul 14 2009 - 15:01:32 CDT)
- Re: [AMBER] PMEMD in a Cygwin Environment Robert Duke (Tue Jul 14 2009 - 15:16:46 CDT)
- [AMBER] Counterion release and Free energy of binding ? Marek Maly (Tue Jul 14 2009 - 17:27:18 CDT)
- Re: [AMBER] Counterion release and Free energy of binding ? case (Tue Jul 14 2009 - 22:10:18 CDT)
- Re: [AMBER] Could not find bond parameter for O2 - ca case (Tue Jul 14 2009 - 22:28:02 CDT)
- [AMBER] Equilibrium water density Myeong Lee (Wed Jul 15 2009 - 03:58:52 CDT)
- [AMBER] Alpha-L-Methys Fucose structure problem bond 0fA.d.C1 OME.d.O "S" Sushil Mishra (Wed Jul 15 2009 - 05:36:26 CDT)
- [AMBER] Please help me out bharat lakhani (Wed Jul 15 2009 - 05:43:21 CDT)
- Re: [AMBER] Alpha-L-Methys Fucose structure problem bond 0fA.d.C1 OME.d.O "S" Shubhra Gupta (Wed Jul 15 2009 - 07:38:34 CDT)
- Re: [AMBER] Alpha-L-Methys Fucose structure problem bond 0fA.d.C1 OME.d.O "S" Sushil Mishra (Wed Jul 15 2009 - 08:58:13 CDT)
- [AMBER] R.E.D. help please s. Bill (Wed Jul 15 2009 - 09:11:46 CDT)
- Re: [AMBER] RE: pmemd parallel Jun Dong (Wed Jul 15 2009 - 10:00:49 CDT)
- RE: [AMBER] DCCM Duggan, Brendan M. (Wed Jul 15 2009 - 11:06:57 CDT)
- Re: [AMBER] R.E.D. help please FyD (Wed Jul 15 2009 - 11:35:57 CDT)
- Re: [AMBER] Alpha-L-Methys Fucose structure problem bond 0fA.d.C1 OME.d.O "S" Bill Ross (Wed Jul 15 2009 - 11:53:41 CDT)
- [AMBER] question of ibelly used in pmemd xiaoqin huang (Wed Jul 15 2009 - 12:34:20 CDT)
- [AMBER] position v time graph Shozeb Haider (Wed Jul 15 2009 - 13:21:35 CDT)
- Re: [AMBER] question of ibelly used in pmemd Robert Duke (Wed Jul 15 2009 - 13:22:23 CDT)
- Re: [AMBER] Equilibrium water density case (Wed Jul 15 2009 - 14:53:54 CDT)
- Re: [AMBER] Please help me out case (Wed Jul 15 2009 - 14:55:21 CDT)
- RE: [AMBER] question of ibelly used in pmemd xiaoqin huang (Wed Jul 15 2009 - 16:28:52 CDT)
- [AMBER] Can I get the torsion angle between base-pairs using ptraj ? Myeong Lee (Wed Jul 15 2009 - 16:51:02 CDT)
- Re: [AMBER] question of ibelly used in pmemd Robert Duke (Wed Jul 15 2009 - 16:56:00 CDT)
- [AMBER] different results for antechamber/mopac for the same input Alan (Wed Jul 15 2009 - 17:05:07 CDT)
- Re: [AMBER] Can I get the torsion angle between base-pairs using ptraj ? Jordan Monnet (Wed Jul 15 2009 - 17:56:12 CDT)
- RE: [AMBER] question of ibelly used in pmemd Ross Walker (Wed Jul 15 2009 - 20:32:07 CDT)
- Re: [AMBER] GAFF and NME, ACE terminal res Jio M (Wed Jul 15 2009 - 23:29:08 CDT)
- [AMBER] ptraj - cluster Cihan Aydin (Thu Jul 16 2009 - 00:55:07 CDT)
- Re: [AMBER] GAFF and NME, ACE terminal res FyD (Thu Jul 16 2009 - 01:25:03 CDT)
- [AMBER] ptraj-radial distribution function Nancy (Thu Jul 16 2009 - 01:34:12 CDT)
- [AMBER] questions about RESP Jeffrey (Thu Jul 16 2009 - 01:57:28 CDT)
- [AMBER] carbonic anhydrase (CA) simulation vhakkim boy (Thu Jul 16 2009 - 02:03:23 CDT)
- [AMBER] command for RESP fitting bharat lakhani (Thu Jul 16 2009 - 02:10:33 CDT)
- [AMBER] query regarding FE4S4 subarna thakur (Thu Jul 16 2009 - 02:14:27 CDT)
- Re: [AMBER] ptraj-radial distribution function Christof Jaeger (Thu Jul 16 2009 - 03:22:02 CDT)
- [AMBER] Coordinate resetting (SHAKE) cannot be accomplished, Zhongjie Liang (Thu Jul 16 2009 - 03:37:29 CDT)
- Re: [AMBER] Coordinate resetting (SHAKE) cannot be accomplished, steinbrt_at_rci.rutgers.edu (Thu Jul 16 2009 - 04:01:15 CDT)
- ´ð¸´: [AMBER] Coordinate resetting (SHAKE) cannot be accomplished, Zhongjie Liang (Thu Jul 16 2009 - 04:16:02 CDT)
- Re: [AMBER] different results for antechamber/mopac for the same input case (Thu Jul 16 2009 - 06:30:08 CDT)
- Re: [AMBER] carbonic anhydrase (CA) simulation case (Thu Jul 16 2009 - 06:36:17 CDT)
- Re: [AMBER] query regarding FE4S4 case (Thu Jul 16 2009 - 06:45:06 CDT)
- [AMBER] IDIVF and PN s. Bill (Thu Jul 16 2009 - 07:11:27 CDT)
- [AMBER] production phase s. Bill (Thu Jul 16 2009 - 07:18:25 CDT)
- [AMBER] vlimit exceeded....nscu_SMD!! Hlengisizwe Ndlovu (Thu Jul 16 2009 - 07:53:50 CDT)
- [AMBER] Disappearing common atoms in Amber 10 with TI Khavrutskii, Ilja (Thu Jul 16 2009 - 08:38:43 CDT)
- Re: [AMBER] Disappearing common atoms in Amber 10 with TI steinbrt_at_rci.rutgers.edu (Thu Jul 16 2009 - 09:09:39 CDT)
- Re: [AMBER] questions about RESP FyD (Thu Jul 16 2009 - 09:27:44 CDT)
- Re: [AMBER] command for RESP fitting FyD (Thu Jul 16 2009 - 09:34:28 CDT)
- [AMBER] ntt=3 and ibelly=1 Kristina Furse (Thu Jul 16 2009 - 11:07:23 CDT)
- [AMBER] amino acids caps for truncated proteins Andrew Voronkov (Thu Jul 16 2009 - 11:31:18 CDT)
- Re: [AMBER] amino acids caps for truncated proteins FyD (Thu Jul 16 2009 - 11:58:32 CDT)
- [AMBER] Umbrella Sampling Hemant Kumar (Thu Jul 16 2009 - 13:01:40 CDT)
- Re: [AMBER] Umbrella Sampling case (Thu Jul 16 2009 - 15:03:29 CDT)
- RE: [AMBER] Umbrella Sampling Seetin, Matthew (Thu Jul 16 2009 - 15:13:59 CDT)
- Re: [AMBER] Disappearing common atoms in Amber 10 with TI Khavrutskii, Ilja (Thu Jul 16 2009 - 16:02:10 CDT)
- Re: [AMBER] Regarding Running QM/MM NEB with PM3-PDDG using Amber10 Keith Van Nostrand (Thu Jul 16 2009 - 16:08:04 CDT)
- [AMBER] amber10 parallel compiling error Nam Kim (Thu Jul 16 2009 - 19:50:57 CDT)
- 回å¤ï¼š [AMBER] amber10 parallel compiling error å»–é’åŽ (Thu Jul 16 2009 - 20:27:05 CDT)
- RE: [AMBER] Regarding Running QM/MM NEB with PM3-PDDG using Amber10 Ross Walker (Thu Jul 16 2009 - 22:34:13 CDT)
- RE: [AMBER] IDIVF and PN Ross Walker (Thu Jul 16 2009 - 22:40:11 CDT)
- RE: [AMBER] amber10 parallel compiling error Ross Walker (Thu Jul 16 2009 - 22:43:15 CDT)
- RE: [AMBER] ntt=3 and ibelly=1 Ross Walker (Thu Jul 16 2009 - 22:44:47 CDT)
- RE: [AMBER] production phase Ross Walker (Thu Jul 16 2009 - 22:56:13 CDT)
- Re: [AMBER] Could not find bond parameter for O2 - ca Yogesh Aher (Fri Jul 17 2009 - 01:37:52 CDT)
- [AMBER] File conversion for from Amber to Charmm Yogesh Aher (Fri Jul 17 2009 - 01:45:11 CDT)
- [AMBER] diffusion coeficients felix (Fri Jul 17 2009 - 03:15:35 CDT)
- [AMBER] Steered MD.....SHAKE error!! Hlengisizwe Ndlovu (Fri Jul 17 2009 - 03:50:11 CDT)
- Re: [AMBER] Disappearing common atoms in Amber 10 with TI steinbrt_at_rci.rutgers.edu (Fri Jul 17 2009 - 03:53:19 CDT)
- Re: [AMBER] Counterion release and Free energy of binding ? Marek Maly (Fri Jul 17 2009 - 06:10:40 CDT)
- Re: [AMBER] Disappearing common atoms in Amber 10 with TI case (Fri Jul 17 2009 - 06:41:39 CDT)
- Re: [AMBER] File conversion for from Amber to Charmm case (Fri Jul 17 2009 - 06:53:06 CDT)
- Re: [AMBER] diffusion coeficients case (Fri Jul 17 2009 - 06:59:41 CDT)
- Re: [AMBER] Steered MD.....SHAKE error!! case (Fri Jul 17 2009 - 07:01:03 CDT)
- RE: [AMBER] ptraj - cluster Wei Huang (Fri Jul 17 2009 - 07:34:00 CDT)
- Re: [AMBER] diffusion coeficients felix (Fri Jul 17 2009 - 08:41:43 CDT)
- RE: [AMBER] ptraj - cluster Cihan Aydin (Fri Jul 17 2009 - 09:22:37 CDT)
- [AMBER] vlimit error after heating restart AL Olson (Fri Jul 17 2009 - 09:26:05 CDT)
- RE: [AMBER] question of ibelly used in pmemd xiaoqin huang (Fri Jul 17 2009 - 09:36:06 CDT)
- RE: [AMBER] question of ibelly used in pmemd xiaoqin huang (Fri Jul 17 2009 - 09:54:55 CDT)
- Re: [AMBER] question of ibelly used in pmemd Robert Duke (Fri Jul 17 2009 - 10:48:41 CDT)
- [AMBER] The Right Neutralization Procedure and Ionic Strength Calculation ? Marek Maly (Fri Jul 17 2009 - 11:34:44 CDT)
- RE: [AMBER] ntt=3 and ibelly=1 Kristina Furse (Fri Jul 17 2009 - 11:41:29 CDT)
- Re: [AMBER] The Right Neutralization Procedure and Ionic Strength Calculation ? Thomas Cheatham III (Fri Jul 17 2009 - 11:50:15 CDT)
- Re: Fw: [AMBER] Re: pls help and suggest Gustavo Seabra (Fri Jul 17 2009 - 11:50:59 CDT)
- Re: [AMBER] reference re. determining size of timestep Gustavo Seabra (Fri Jul 17 2009 - 11:53:46 CDT)
- Re: [AMBER] The Right Neutralization Procedure and Ionic Strength Calculation ? Marek Maly (Fri Jul 17 2009 - 13:37:02 CDT)
- [AMBER] RESP fit E.M. (Fri Jul 17 2009 - 18:00:08 CDT)
- [AMBER] charge not zero on group: RESP Jio M (Sat Jul 18 2009 - 00:14:58 CDT)
- Re: [AMBER] RESP fit FyD (Sat Jul 18 2009 - 01:29:56 CDT)
- Re: [AMBER] charge not zero on group: RESP Ben Roberts (Sat Jul 18 2009 - 07:45:10 CDT)
- [AMBER] RE: charge not zero on group:''''.respin1 attached Jio M (Sat Jul 18 2009 - 09:40:18 CDT)
- [AMBER] amber10 parallel compiling error nam kim (Sat Jul 18 2009 - 12:19:39 CDT)
- RE: [AMBER] Umbrella Sampling Hemant Kumar (Sat Jul 18 2009 - 14:28:19 CDT)
- [AMBER] Box shape change Hemant Kumar (Sat Jul 18 2009 - 14:38:46 CDT)
- Re: [AMBER] Box shape change Carlos Simmerling (Sat Jul 18 2009 - 20:35:41 CDT)
- Re: [AMBER] RE: charge not zero on group:''''.respin1 attached FyD (Sun Jul 19 2009 - 02:41:17 CDT)
- [AMBER] Different machines s. Bill (Sun Jul 19 2009 - 04:55:48 CDT)
- [AMBER] -a flag :RESP Jio M (Sun Jul 19 2009 - 05:48:20 CDT)
- Re: [AMBER] Box shape change Hemant Kumar (Sun Jul 19 2009 - 06:00:18 CDT)
- Re: [AMBER] Box shape change Carlos Simmerling (Sun Jul 19 2009 - 06:40:03 CDT)
- Re: [AMBER] Box shape change Hemant Kumar (Sun Jul 19 2009 - 07:05:04 CDT)
- [AMBER] which keyword s. Bill (Sun Jul 19 2009 - 07:21:23 CDT)
- Re: [AMBER] Box shape change Carlos Simmerling (Sun Jul 19 2009 - 08:51:44 CDT)
- [AMBER] (no subject) gunajyoti das (Sun Jul 19 2009 - 10:14:20 CDT)
- [AMBER] (no subject) gunajyoti das (Sun Jul 19 2009 - 10:13:01 CDT)
- RE: [AMBER] Different machines Ross Walker (Sun Jul 19 2009 - 11:28:52 CDT)
- Re: [AMBER] Box shape change Hemant Kumar (Sun Jul 19 2009 - 12:38:43 CDT)
- [AMBER] Tutorial A3 s. Bill (Sun Jul 19 2009 - 14:33:58 CDT)
- Re: [AMBER] Re: MM-PBSA delphi.crg and delphi.siz Manish Kumar (Sun Jul 19 2009 - 14:36:35 CDT)
- Re: [AMBER] Re: MM-PBSA delphi.crg and delphi.siz Ray Luo (Sun Jul 19 2009 - 17:45:29 CDT)
- Re: [AMBER] command for RESP fitting bharat lakhani (Mon Jul 20 2009 - 02:01:23 CDT)
- Re: [AMBER] questions about RESP Jeffrey (Mon Jul 20 2009 - 02:42:29 CDT)
- [AMBER] bugfix 10 failing for ambertools1.2 Alan (Mon Jul 20 2009 - 03:14:16 CDT)
- [AMBER] Re: bugfix 10 failing for ambertools1.2 Alan (Mon Jul 20 2009 - 03:25:55 CDT)
- [AMBER] nasty memory bug in calculatePrincipalAxis Hannes Loeffler (Mon Jul 20 2009 - 03:30:38 CDT)
- [AMBER] MM-PBSA tail: equil.out: file truncated during equilibration of salivated complex Sushil Mishra (Mon Jul 20 2009 - 03:32:32 CDT)
- [AMBER] Output file truncated during equilibration of salivated complex in MM-PBSA Sushil Mishra (Mon Jul 20 2009 - 05:40:51 CDT)
- Re: [AMBER] Disappearing common atoms in Amber 10 with TI Khavrutskii, Ilja (Mon Jul 20 2009 - 06:46:38 CDT)
- Re: [AMBER] Disappearing common atoms in Amber 10 with TI steinbrt_at_rci.rutgers.edu (Mon Jul 20 2009 - 07:05:24 CDT)
- [AMBER] file truncated : Output file truncated during equilibration of salivated complex in MM-PBSA Sushil Mishra (Mon Jul 20 2009 - 07:26:27 CDT)
- RE: [AMBER] question of ibelly used in pmemd xiaoqin huang (Mon Jul 20 2009 - 09:21:20 CDT)
- [AMBER] RE: DCCM Duggan, Brendan M. (Mon Jul 20 2009 - 09:29:46 CDT)
- Re: [AMBER] question of ibelly used in pmemd Robert Duke (Mon Jul 20 2009 - 09:42:15 CDT)
- RE: [AMBER] question of ibelly used in pmemd xiaoqin huang (Mon Jul 20 2009 - 10:20:32 CDT)
- Re: [AMBER] question of ibelly used in pmemd Robert Duke (Mon Jul 20 2009 - 10:53:50 CDT)
- RE: [AMBER] question of ibelly used in pmemd xiaoqin huang (Mon Jul 20 2009 - 11:28:42 CDT)
- Re: [AMBER] question of ibelly used in pmemd Robert Duke (Mon Jul 20 2009 - 11:42:08 CDT)
- RE: [AMBER] question of ibelly used in pmemd Kristina Furse (Mon Jul 20 2009 - 11:56:26 CDT)
- Re: [AMBER] question of ibelly used in pmemd Robert Duke (Mon Jul 20 2009 - 12:10:03 CDT)
- RE: [AMBER] question of ibelly used in pmemd xiaoqin huang (Mon Jul 20 2009 - 12:20:36 CDT)
- Re: [AMBER] amber10 parallel compiling error nam kim (Mon Jul 20 2009 - 12:24:14 CDT)
- RE: [AMBER] question of ibelly used in pmemd Ross Walker (Mon Jul 20 2009 - 12:32:08 CDT)
- RE: [AMBER] amber10 parallel compiling error Ross Walker (Mon Jul 20 2009 - 12:33:08 CDT)
- RE: [AMBER] question of ibelly used in pmemd xiaoqin huang (Mon Jul 20 2009 - 12:39:16 CDT)
- Re: [AMBER] question of ibelly used in pmemd Robert Duke (Mon Jul 20 2009 - 12:55:23 CDT)
- Re: [AMBER] amber10 parallel compiling error nam kim (Mon Jul 20 2009 - 13:15:16 CDT)
- Re: [AMBER] amber10 parallel compiling error nam kim (Mon Jul 20 2009 - 13:34:41 CDT)
- RE: [AMBER] Tutorial A3 Ross Walker (Mon Jul 20 2009 - 14:03:44 CDT)
- [AMBER] nonbon.f question Rizwan Tai (Mon Jul 20 2009 - 14:31:17 CDT)
- Re: [AMBER] questions about RESP FyD (Mon Jul 20 2009 - 15:46:04 CDT)
- Re: [AMBER] Re: MM-PBSA delphi.crg and delphi.siz Manish Kumar (Mon Jul 20 2009 - 16:11:20 CDT)
- [AMBER] RE: the copper paramter Ross Walker (Mon Jul 20 2009 - 16:38:14 CDT)
- Re: [AMBER] amber10 parallel compiling error nam kim (Mon Jul 20 2009 - 17:53:24 CDT)
- [AMBER] equivalent atoms Ye MEI (Mon Jul 20 2009 - 23:56:52 CDT)
- Re: [AMBER] amber10 parallel compiling error Toshifumi Yui (Tue Jul 21 2009 - 00:46:11 CDT)
- [AMBER] ptraj grid option Youn Kyeung Lee (Tue Jul 21 2009 - 02:15:11 CDT)
- Re: [AMBER] question of ibelly used in pmemd Robert Duke (Tue Jul 21 2009 - 08:15:20 CDT)
- Re: [AMBER] IGB=7 vs IGB=5 Carlos Simmerling (Tue Jul 21 2009 - 08:51:22 CDT)
- RE: [AMBER] question of ibelly used in pmemd Kristina Furse (Tue Jul 21 2009 - 08:53:21 CDT)
- Re: [AMBER] question of ibelly used in pmemd Robert Duke (Tue Jul 21 2009 - 09:16:21 CDT)
- Re: [AMBER] Re: MM-PBSA delphi.crg and delphi.siz Ray Luo (Tue Jul 21 2009 - 09:24:40 CDT)
- RE: [AMBER] question of ibelly used in pmemd Kristina Furse (Tue Jul 21 2009 - 11:27:29 CDT)
- Re: [AMBER] amber10 parallel compiling error nam kim (Tue Jul 21 2009 - 12:06:32 CDT)
- Re: [AMBER] need charges of FE-S cluster Markus Kaukonen (Tue Jul 21 2009 - 13:50:39 CDT)
- [AMBER] Output forces in Sander Frank X. Vázquez (Tue Jul 21 2009 - 16:58:36 CDT)
- [AMBER] Compiling Amber 10 (serial) on Mac OS X 10.5.7 w/ gcc, Intel Fortan 11.0 and MKL 10.0 David Watson (Tue Jul 21 2009 - 16:20:36 CDT)
- [AMBER] RE: Questions about QMMM Ross Walker (Tue Jul 21 2009 - 17:47:49 CDT)
- [AMBER] Patching terminal Manish Kumar (Tue Jul 21 2009 - 18:53:54 CDT)
- =?utf-8?B?UmU6IFtBTUJFUl0gQ29tcGlsaW5nIEFtYmVyIDEwIChzZXJpYWwpIG9uIE1hYyBPUyBYIDEwLjUuNyB3LyBnY2MsCUludGVsIEZvcnRhbiAxMS4wIGFuZCBNS0wgMTAuMA==?= vitor.felix (Tue Jul 21 2009 - 22:15:06 CDT)
- [AMBER] ESP charges of Fe4S4 subarna thakur (Wed Jul 22 2009 - 00:19:48 CDT)
- [AMBER] Regarding Hbond interactions aneesh cna (Wed Jul 22 2009 - 01:30:10 CDT)
- [AMBER] Equilibration step Olotu Odunayo (Wed Jul 22 2009 - 04:47:37 CDT)
- Re: [AMBER] Equilibration step Tom Joseph (Wed Jul 22 2009 - 07:35:15 CDT)
- [AMBER] errors of PMEMD installation å»–é’åŽ (Wed Jul 22 2009 - 09:28:45 CDT)
- [AMBER] saquinavir parameterization with antechamber Oliver Kuhn (Wed Jul 22 2009 - 10:42:49 CDT)
- Re: [AMBER] Regarding Running QM/MM NEB with PM3-PDDG using Amber10 Keith Van Nostrand (Wed Jul 22 2009 - 10:58:08 CDT)
- RE: [AMBER] Equilibration step Olotu Odunayo (Wed Jul 22 2009 - 11:41:13 CDT)
- RE: [AMBER] Equilibration step Olotu Odunayo (Wed Jul 22 2009 - 11:46:12 CDT)
- Re: [AMBER] saquinavir parameterization with antechamber FyD (Wed Jul 22 2009 - 13:41:21 CDT)
- Re: [AMBER] Equilibration step Tom Joseph (Wed Jul 22 2009 - 14:05:58 CDT)
- [AMBER] [ALERT]: It's the time to come out on streets and stop the complete nation on it's place - Take immediate actions at once with full force. Organization (Wed Jul 22 2009 - 14:13:37 CDT)
- Re: [AMBER] Compiling Amber 10 (serial) on Mac OS X 10.5.7 w/ gcc, Intel Fortan 11.0 and MKL 10.0 Scott Brozell (Wed Jul 22 2009 - 14:52:59 CDT)
- [AMBER] how to launch XLEaP from SSH Secure Shell? Yana Berezovskaya (Wed Jul 22 2009 - 17:44:45 CDT)
- Re: [AMBER] how to launch XLEaP from SSH Secure Shell? Robert Duke (Wed Jul 22 2009 - 18:07:24 CDT)
- Re: [AMBER] how to launch XLEaP from SSH Secure Shell? Tom Joseph (Wed Jul 22 2009 - 18:24:56 CDT)
- Re: [AMBER] how to launch XLEaP from SSH Secure Shell? David Watson (Wed Jul 22 2009 - 19:30:12 CDT)
- Re: [AMBER] how to launch XLEaP from SSH Secure Shell? Thomas Patko (Wed Jul 22 2009 - 19:47:51 CDT)
- Re: [AMBER] amber10 parallel compiling error case (Wed Jul 22 2009 - 21:15:50 CDT)
- Re: [AMBER] setting AMBERHOME case (Wed Jul 22 2009 - 21:15:34 CDT)
- RE: [AMBER] Equilibration step Olotu Odunayo (Thu Jul 23 2009 - 01:52:50 CDT)
- Re: [AMBER] saquinavir parameterization with antechamber Oliver Kuhn (Thu Jul 23 2009 - 02:02:49 CDT)
- Re: [AMBER] Re: MM-PBSA delphi.crg and delphi.siz Manish Kumar (Thu Jul 23 2009 - 02:10:51 CDT)
- Re: [AMBER] saquinavir parameterization with antechamber FyD (Thu Jul 23 2009 - 02:29:57 CDT)
- Re: [AMBER] saquinavir parameterization with antechamber Oliver Kuhn (Thu Jul 23 2009 - 03:06:00 CDT)
- [AMBER] MM-PBSA cannot finish without error message. Catein Catherine (Thu Jul 23 2009 - 04:57:00 CDT)
- Re: [AMBER] questions about RESP Jeffrey (Thu Jul 23 2009 - 07:51:34 CDT)
- [AMBER] Replacing DNA base with analog amoreno_at_wesleyan.edu (Thu Jul 23 2009 - 09:20:08 CDT)
- RE: [AMBER] Replacing DNA base with analog Kristina Furse (Thu Jul 23 2009 - 09:36:26 CDT)
- Re: [AMBER] questions about RESP FyD (Thu Jul 23 2009 - 12:49:23 CDT)
- Re: [AMBER] errors of PMEMD installation Mengjuei Hsieh (Thu Jul 23 2009 - 14:25:27 CDT)
- [AMBER] Compiling AMBER 10 (parallel, MPICH2) on Mac OS X Intel w/gcc, ifort, icc David Watson (Thu Jul 23 2009 - 15:03:59 CDT)
- RE: [Subject Filtered] Re: [AMBER] PMEMD in a Cygwin Environment 8% Hopkins, Robert (Thu Jul 23 2009 - 15:37:12 CDT)
- [AMBER] Langevin Dynamics in AMBER10 Biswaranjan Meher (Thu Jul 23 2009 - 16:54:58 CDT)
- Re: [AMBER] Langevin Dynamics in AMBER10 Carlos Simmerling (Thu Jul 23 2009 - 16:57:44 CDT)
- Re: [AMBER] Regarding Hbond interactions Thomas Cheatham (Thu Jul 23 2009 - 17:57:57 CDT)
- Re: [AMBER] Langevin Dynamics in AMBER10 Biswaranjan Meher (Thu Jul 23 2009 - 18:12:59 CDT)
- 回å¤ï¼š [AMBER] errors of PMEMD installation å»–é’åŽ (Thu Jul 23 2009 - 20:27:51 CDT)
- [AMBER] mailing list Qinghua Liao (Thu Jul 23 2009 - 20:45:50 CDT)
- Re: [AMBER] amber10 parallel compiling error nam kim (Thu Jul 23 2009 - 23:32:14 CDT)
- [AMBER] cpin error Rukman Hertadi (Fri Jul 24 2009 - 02:18:52 CDT)
- [AMBER] radical simulation Jeffrey (Fri Jul 24 2009 - 02:34:53 CDT)
- Re: [AMBER] radical simulation Manish Kumar (Fri Jul 24 2009 - 02:48:01 CDT)
- Re: 回å¤ï¼š [AMBER] errors of PMEMD installation Mengjuei Hsieh (Fri Jul 24 2009 - 03:41:05 CDT)
- Re: 回å¤ï¼š [AMBER] errors of PMEMD installation Qinghua Liao (Fri Jul 24 2009 - 04:18:44 CDT)
- Re: 回å¤ï¼š [AMBER] errors of PMEMD installation Qinghua Liao (Fri Jul 24 2009 - 04:59:03 CDT)
- Re: [AMBER] radical simulation FyD (Fri Jul 24 2009 - 05:27:34 CDT)
- Re: [AMBER] Langevin Dynamics in AMBER10 Carlos Simmerling (Fri Jul 24 2009 - 07:01:28 CDT)
- [AMBER] xleap facility to insert a residue Sergey Samsonov (Fri Jul 24 2009 - 08:07:27 CDT)
- [AMBER] thymidine monophosphate parametrization Yvonne.Westermaier_at_unige.ch (Fri Jul 24 2009 - 10:18:18 CDT)
- [AMBER] loading a mol2 file in xleap vallespardojl_at_chem.leidenuniv.nl (Fri Jul 24 2009 - 12:40:13 CDT)
- Re: 回å¤ï¼š [AMBER] errors of PMEMD installation Mengjuei Hsieh (Fri Jul 24 2009 - 13:12:00 CDT)
- Re: [AMBER] cpin error case (Fri Jul 24 2009 - 14:41:00 CDT)
- Re: [AMBER] loading a mol2 file in xleap FyD (Fri Jul 24 2009 - 15:00:41 CDT)
- [AMBER] DNA + intercalator Rodrigo Galindo (Fri Jul 24 2009 - 17:22:35 CDT)
- Re: [AMBER] DNA + intercalator Bill Ross (Fri Jul 24 2009 - 18:03:06 CDT)
- Re: 回å¤ï¼š [AMBER] errors of PMEMD installation Qinghua Liao (Fri Jul 24 2009 - 20:24:10 CDT)
- Re: [AMBER] DNA + intercalator Ashish Runthala (Fri Jul 24 2009 - 22:12:27 CDT)
- Re: [AMBER] errors of PMEMD installation Mengjuei Hsieh (Sat Jul 25 2009 - 22:10:11 CDT)
- [AMBER] Could not find type: MG Parameter file was not saved. Mannan (Sat Jul 25 2009 - 22:41:24 CDT)
- [AMBER] Simulation with United atom force field in Implicit solvent. Manish Kumar (Sat Jul 25 2009 - 22:55:42 CDT)
- Re: [AMBER] Simulation with United atom force field in Implicit solvent. Ray Luo (Sun Jul 26 2009 - 02:09:07 CDT)
- Re: [AMBER] radical simulation Jeffrey (Sun Jul 26 2009 - 07:28:39 CDT)
- Re: [AMBER] Simulation with United atom force field in Implicit solvent. Manish Kumar (Sun Jul 26 2009 - 13:22:40 CDT)
- [AMBER] Could not find type: MG Parameter file was not saved. though it was loaded Mannan (Sun Jul 26 2009 - 22:49:54 CDT)
- Re: [AMBER] Could not find type: MG Parameter file was not saved. though it was loaded FyD (Mon Jul 27 2009 - 00:03:00 CDT)
- [AMBER] Re: Ambertools 1.2 installation error Bokun Cho (Mon Jul 27 2009 - 01:51:49 CDT)
- [AMBER] Removed proton in protein (Advanced Tutorials A1 old) albert albert (Mon Jul 27 2009 - 01:57:20 CDT)
- [AMBER] How to read md trajectory for each time slice as an input coordinate Myeong Lee (Mon Jul 27 2009 - 03:16:47 CDT)
- Re: [AMBER] Removed proton in protein (Advanced Tutorials A1 old) Ashish Runthala (Mon Jul 27 2009 - 04:09:23 CDT)
- [AMBER] error in antechamber Qinghua Liao (Mon Jul 27 2009 - 06:57:50 CDT)
- Re: [AMBER] loading a mol2 file in xleap vallespardojl_at_chem.leidenuniv.nl (Mon Jul 27 2009 - 07:40:13 CDT)
- [AMBER] Average structure over simulation Olotu Odunayo (Mon Jul 27 2009 - 08:38:59 CDT)
- Re: [AMBER] loading a mol2 file in xleap FyD (Mon Jul 27 2009 - 08:44:50 CDT)
- Re: [AMBER] Re: Ambertools 1.2 installation error case (Mon Jul 27 2009 - 09:38:28 CDT)
- Re: [AMBER] thymidine monophosphate parametrization case (Mon Jul 27 2009 - 09:47:38 CDT)
- [AMBER] RE: Average structure over simulation Niel Henriksen (Mon Jul 27 2009 - 09:56:40 CDT)
- Re: [AMBER] Re: bugfix 10 failing for ambertools1.2 case (Mon Jul 27 2009 - 10:03:24 CDT)
- Re: [AMBER] Output forces in Sander case (Mon Jul 27 2009 - 10:11:30 CDT)
- RE: [AMBER] RE: Average structure over simulation Olotu Odunayo (Mon Jul 27 2009 - 10:47:20 CDT)
- [AMBER] residues lacking connect0/connect1 Jio M (Mon Jul 27 2009 - 11:10:06 CDT)
- Re: [AMBER] Removed proton in protein (Advanced Tutorials A1 old) Bill Ross (Mon Jul 27 2009 - 11:17:29 CDT)
- Re: [AMBER] residues lacking connect0/connect1 Bill Ross (Mon Jul 27 2009 - 11:40:31 CDT)
- Re: [AMBER] only ff94 and ff99 for GBSA? Andrew Voronkov (Mon Jul 27 2009 - 11:41:27 CDT)
- Re: [AMBER] only ff94 and ff99 for GBSA? case (Mon Jul 27 2009 - 12:05:48 CDT)
- [AMBER] nonbon.f question Rizwan Tai (Mon Jul 27 2009 - 14:30:12 CDT)
- Re: [AMBER] nonbon.f question Carlos Simmerling (Mon Jul 27 2009 - 14:34:20 CDT)
- [AMBER] Using idecomp=3 with igb=10 (PB) Chris Whittleston (Mon Jul 27 2009 - 15:04:14 CDT)
- Re: [AMBER] error in antechamber Mengjuei Hsieh (Mon Jul 27 2009 - 17:29:06 CDT)
- Re: [AMBER] error in antechamber Qinghua Liao (Mon Jul 27 2009 - 20:02:26 CDT)
- Re: [AMBER] error in antechamber case (Mon Jul 27 2009 - 23:23:54 CDT)
- Re: [AMBER] error in antechamber Qinghua Liao (Tue Jul 28 2009 - 00:13:49 CDT)
- RE: [AMBER] cpin error Rukman Hertadi (Tue Jul 28 2009 - 00:22:18 CDT)
- Re: [AMBER] only ff94 and ff99 for GBSA? Andrew Voronkov (Tue Jul 28 2009 - 01:12:15 CDT)
- [AMBER] QM/MM s. Bill (Tue Jul 28 2009 - 01:44:15 CDT)
- Re: [AMBER] QM/MM steinbrt_at_rci.rutgers.edu (Tue Jul 28 2009 - 02:19:32 CDT)
- Re: [AMBER] only ff94 and ff99 for GBSA? FyD (Tue Jul 28 2009 - 02:32:52 CDT)
- [AMBER] PLUMED release 1.1.0 available Massimiliano Bonomi (Tue Jul 28 2009 - 03:10:39 CDT)
- [AMBER] RE: MM-PBSA test jobs error messages Catein Catherine (Tue Jul 28 2009 - 04:24:31 CDT)
- [AMBER] How to visualize PCA results without IED? Catein Catherine (Tue Jul 28 2009 - 04:30:22 CDT)
- Re: [AMBER] How to visualize PCA results without IED? Vlad Cojocaru (Tue Jul 28 2009 - 04:58:50 CDT)
- Re: [AMBER] Using idecomp=3 with igb=10 (PB) Hannes Kopitz (Tue Jul 28 2009 - 05:09:01 CDT)
- Re: [AMBER] How to visualize PCA results without IED? Hannes Loeffler (Tue Jul 28 2009 - 05:12:04 CDT)
- Re: [AMBER] Removed proton in protein (Advanced Tutorials A1 old) Ashish Runthala (Tue Jul 28 2009 - 05:28:40 CDT)
- Re: [AMBER] How to visualize PCA results without IED? Vlad Cojocaru (Tue Jul 28 2009 - 05:42:05 CDT)
- Re: [AMBER] Using idecomp=3 with igb=10 (PB) Chris Whittleston (Tue Jul 28 2009 - 05:54:09 CDT)
- Re: [AMBER] How to visualize PCA results without IED? Shozeb Haider (Tue Jul 28 2009 - 06:02:22 CDT)
- Re: [AMBER] Removed proton in protein (Advanced Tutorials A1 old) FyD (Tue Jul 28 2009 - 06:59:51 CDT)
- [AMBER] pulling two atoms in SMD Santosh Mogurampelly (Tue Jul 28 2009 - 07:10:12 CDT)
- Re: [AMBER] thymidine monophosphate parametrization Yvonne.Westermaier_at_unige.ch (Tue Jul 28 2009 - 07:10:43 CDT)
- Re: [AMBER] Using idecomp=3 with igb=10 (PB) Hannes Kopitz (Tue Jul 28 2009 - 07:47:15 CDT)
- Re: [AMBER] Removed proton in protein (Advanced Tutorials A1 old) Ashish Runthala (Tue Jul 28 2009 - 08:08:48 CDT)
- Re: [AMBER] Using idecomp=3 with igb=10 (PB) Ashish Runthala (Tue Jul 28 2009 - 09:33:02 CDT)
- [AMBER] Error in Sander Output File Alison Saunders (Tue Jul 28 2009 - 12:00:12 CDT)
- [AMBER] Am I doing the right thing nicholus bhattacharjee (Tue Jul 28 2009 - 12:20:57 CDT)
- [AMBER] Question on REST and VALUE1 keywords hwu_at_clarku.edu (Tue Jul 28 2009 - 16:06:34 CDT)
- Re: [AMBER] Question on REST and VALUE1 keywords Carlos Simmerling (Tue Jul 28 2009 - 16:14:20 CDT)
- Re: [AMBER] Question on REST and VALUE1 keywords Ashish Runthala (Tue Jul 28 2009 - 20:26:19 CDT)
- Re: [AMBER] Am I doing the right thing Ashish Runthala (Tue Jul 28 2009 - 20:35:09 CDT)
- [AMBER] how to choose exclusion policy for GPCR xueqin pang (Tue Jul 28 2009 - 21:12:33 CDT)
- Re: [AMBER] Am I doing the right thing Bill Ross (Tue Jul 28 2009 - 21:39:48 CDT)
- Re: [AMBER] Am I doing the right thing Ashish Runthala (Tue Jul 28 2009 - 22:44:59 CDT)
- Re: [AMBER] The Right Neutralization Procedure and Ionic Strength Calculation ? Andrew Voronkov (Tue Jul 28 2009 - 23:19:41 CDT)
- Re: [AMBER] Am I doing the right thing nicholus bhattacharjee (Tue Jul 28 2009 - 23:36:31 CDT)
- [AMBER] RE: MM-PBSA test jobs error messages (with bugfix.all) Catein Catherine (Wed Jul 29 2009 - 00:50:50 CDT)
- [AMBER] pdb file no bond and charges Jio M (Wed Jul 29 2009 - 01:28:48 CDT)
- [AMBER] RED.III: Invalid Optimization OUTPUT s. Bill (Wed Jul 29 2009 - 03:37:27 CDT)
- [AMBER] Re: MM-PBSA test jobs error messages (Can i fix the problem without recompile the amber?) Catein Catherine (Wed Jul 29 2009 - 04:39:02 CDT)
- [AMBER] MPI error vhakkim boy (Wed Jul 29 2009 - 04:44:35 CDT)
- [AMBER] MM/PBSA, MM/GBSA and NMODE Analysis Matthias Negri (Wed Jul 29 2009 - 05:55:46 CDT)
- Re: [AMBER] MPI error Robert Duke (Wed Jul 29 2009 - 07:05:57 CDT)
- Re: Solved it thanks [AMBER] RED.III: Invalid Optimization OUTPUT s. Bill (Wed Jul 29 2009 - 07:14:02 CDT)
- [AMBER] Compiling AmberTools 1.2 with intel compilers for Mac Osx in 64 bits Alan (Wed Jul 29 2009 - 11:00:42 CDT)
- Re: [AMBER] Compiling AmberTools 1.2 with intel compilers for Mac Osx in 64 bits David Watson (Wed Jul 29 2009 - 11:21:50 CDT)
- [AMBER] Installing Amber10 on Ubuntu David Dubins (Wed Jul 29 2009 - 13:50:12 CDT)
- [AMBER] Re: problem of installation of amber10 Mengjuei Hsieh (Wed Jul 29 2009 - 14:41:52 CDT)
- Re: [AMBER] Installing Amber10 on Ubuntu Rodrigo Galindo (Wed Jul 29 2009 - 14:49:33 CDT)
- Re: [AMBER] MM/PBSA, MM/GBSA and NMODE Analysis Ray Luo (Wed Jul 29 2009 - 19:25:14 CDT)
- [AMBER] Normal mode analysis of water bharat lakhani (Thu Jul 30 2009 - 04:27:19 CDT)
- [AMBER] PCA analysis: the first vector is the movement of whole molecule. Catein Catherine (Thu Jul 30 2009 - 05:37:49 CDT)
- Re: [AMBER] PCA analysis: the first vector is the movement of whole molecule. Hannes Loeffler (Thu Jul 30 2009 - 05:52:48 CDT)
- Re: [AMBER] Compiling AmberTools 1.2 with intel compilers for Mac Osx in 64 bits Alan (Thu Jul 30 2009 - 08:39:03 CDT)
- Re: [AMBER] Normal mode analysis of water case (Thu Jul 30 2009 - 09:11:23 CDT)
- Re: [AMBER] Compiling AmberTools 1.2 with intel compilers for Mac Osx in 64 bits David Watson (Thu Jul 30 2009 - 14:10:39 CDT)
- [AMBER] ambpdb problem Jio M (Thu Jul 30 2009 - 14:12:10 CDT)
- Re: [AMBER] ambpdb problem Jordan Monnet (Thu Jul 30 2009 - 14:32:57 CDT)
- [AMBER] Non-Standard Amino Acid Residue LEAP ERROR Brothers, Michael Charles (Thu Jul 30 2009 - 17:28:43 CDT)
- Re: [AMBER] ambpdb problem Ashish Runthala (Thu Jul 30 2009 - 22:44:10 CDT)
- Re: [AMBER] Non-Standard Amino Acid Residue LEAP ERROR Ashish Runthala (Thu Jul 30 2009 - 22:40:45 CDT)
- RE: [AMBER] PCA analysis: the first vector is the movement of whole molecule. Catein Catherine (Thu Jul 30 2009 - 22:46:49 CDT)
- [AMBER] What is the meaning of "rms first *" Catein Catherine (Thu Jul 30 2009 - 22:49:17 CDT)
- Re: [AMBER] ambpdb problem Jio M (Fri Jul 31 2009 - 02:11:32 CDT)
- RE: [AMBER] PCA analysis: the first vector is the movement of whole molecule. Hannes Loeffler (Fri Jul 31 2009 - 02:27:54 CDT)
- [AMBER] query bharat lakhani (Fri Jul 31 2009 - 02:42:04 CDT)
- [AMBER] Compilation error with pmemd (amber10) on fedora9 64 bits Nicolas SAPAY (Fri Jul 31 2009 - 04:41:21 CDT)
- Re: [AMBER] Compilation error with pmemd (amber10) on fedora9 64 bits Robert Duke (Fri Jul 31 2009 - 07:33:52 CDT)
- Re: [AMBER] Compilation error with pmemd (amber10) on fedora9 64 bits Nicolas SAPAY (Fri Jul 31 2009 - 07:55:18 CDT)
- [AMBER] vertex atom mismatch Clark, Tiffany D (Fri Jul 31 2009 - 08:14:15 CDT)
- Re: [AMBER] ambpdb problem Jordan Monnet (Fri Jul 31 2009 - 09:30:54 CDT)
- Re: [AMBER] vertex atom mismatch Guillermo Mulliert Carlín (Fri Jul 31 2009 - 09:33:46 CDT)
- [AMBER] problem from xleap Qinghua Liao (Fri Jul 31 2009 - 09:38:18 CDT)
- Re: [AMBER] query Pansy Patel (Fri Jul 31 2009 - 09:41:05 CDT)
- Re: [AMBER] problem from xleap Tom Joseph (Fri Jul 31 2009 - 11:41:49 CDT)
- [AMBER] Protonated or not s. Bill (Fri Jul 31 2009 - 12:15:32 CDT)
- Re: [AMBER] Protonated or not Adrian Roitberg (Fri Jul 31 2009 - 12:32:50 CDT)
- RE: [AMBER] Non-Standard Amino Acid Residue LEAP ERROR Brothers, Michael Charles (Fri Jul 31 2009 - 12:36:10 CDT)
- [AMBER] Metalloproteins - Ligand Protonation s. Bill (Fri Jul 31 2009 - 13:01:42 CDT)
- Re: [AMBER] Removed proton in protein (Advanced Tutorials A1 old) albert albert (Fri Jul 31 2009 - 14:27:02 CDT)
- Re: [AMBER] query Ashish Runthala (Fri Jul 31 2009 - 20:23:07 CDT)
- Re: [AMBER] ambpdb problem Ashish Runthala (Fri Jul 31 2009 - 20:28:42 CDT)
- Re: [AMBER] problem from xleap Qinghua Liao (Fri Jul 31 2009 - 20:38:19 CDT)
- Re: [AMBER] Non-Standard Amino Acid Residue LEAP ERROR Ashish Runthala (Fri Jul 31 2009 - 20:39:54 CDT)
- Re: [AMBER] problem from xleap Ashish Runthala (Fri Jul 31 2009 - 22:33:10 CDT)
Last message date: Thu Dec 31 2009 - 22:57:46 CST
Archived on: Thu Dec 31 2009 - 22:58:33 CST
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