AMBER Archive (2009)
Subject: RE: [AMBER] Replacing DNA base with analog
From: Kristina Furse (Kristina.Furse.1_at_nd.edu)
Maybe check your prep file for the base analog and make sure it has connect0/connect1 information? I forget exactly how it works, but you can find info on it in the leap section of the manual. If I remember correctly, these things tell leap how to connect the backbone between residues.
-- Kristina Furse Postdoctoral Research Associate 260B Stepan Chemistry Hall Notre Dame, IN 46556 (574)631-3904 ________________________________________ From: amber-bounces_at_ambermd.org [amber-bounces_at_ambermd.org] On Behalf Of amoreno_at_wesleyan.edu [amoreno_at_wesleyan.edu] Sent: Thursday, July 23, 2009 10:20 AM To: AMBER_at_ambermd.org Subject: [AMBER] Replacing DNA base with analog