AMBER Archive (2009)

Subject: Re: [AMBER] How to visualize PCA results without IED?

• Previous message: Chris Whittleston: "Re: [AMBER] Using idecomp=3 with igb=10 (PB)"
• In reply to: Catein Catherine: "[AMBER] How to visualize PCA results without IED?"
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Hi Cat,

You can use a software called PCAZIP. Its free to download from the CCPB
website (http://www.ccpb.ac.uk/software/) and can be used on your
machine. Its very effective for visualisation of PCA results.

We have used it in the article :

Molecular dynamics and principal components analysis of human telomeric
quadruplex multimers.
<http://www.ncbi.nlm.nih.gov/pubmed/18375510?ordinalpos=5&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum>
Haider S, Parkinson GN, Neidle S.
Biophys J. 2008 Jul;95(1):296-311.

Best wishes

Shozeb

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• Previous message: Chris Whittleston: "Re: [AMBER] Using idecomp=3 with igb=10 (PB)"
• In reply to: Catein Catherine: "[AMBER] How to visualize PCA results without IED?"
• Messages sorted by: [ date ] [ thread ] [ subject ] [ author ]