AMBER Archive (2009)

Subject: Re: [AMBER] Could not find bond parameter for O2 - ca

From: case (case_at_biomaps.rutgers.edu)
Date: Tue Jul 14 2009 - 22:28:02 CDT


On Tue, Jul 14, 2009, Yogesh Aher wrote:

> Could not find bond parameter for: O2 - ca

If you are making covalent connections between gaff and Amber force fields,
you will need to create these missing paramters yourself, probably by analogy
to similar parameters in one or the other parmeter file. There are no
"standard" sets of such parameters available.

...dac

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