AMBER Archive (2005) - Jan 2005 By DateMost recent messages
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Starting: Sat Jan 01 2005 - 08:08:24 CST
Ending: Mon Jan 31 2005 - 23:14:47 CST
- Re: AMBER: Problem with computing Resp charges using RED Cenk Andac (Sat Jan 01 2005 - 08:08:24 CST)
- Re: AMBER: Problem with computing Resp charges using RED FyD (Sat Jan 01 2005 - 13:51:12 CST)
- AMBER: Sander and NMODE energy minimization fangyu liang (Sat Jan 01 2005 - 23:53:49 CST)
- Re: AMBER: NSCM David A. Case (Sun Jan 02 2005 - 16:35:54 CST)
- Re: AMBER: Sander and NMODE energy minimization David A. Case (Sun Jan 02 2005 - 16:47:28 CST)
- AMBER: How can i use AMBER with CHARMM forcefield parameter? ÍőСÇĺ (Sun Jan 02 2005 - 21:54:25 CST)
- AMBER: MM_PBSA fillratio error Jiten (Mon Jan 03 2005 - 03:36:30 CST)
- AMBER: Hbonds restraints OK but Dihedral restraints not applied pl (Mon Jan 03 2005 - 08:06:48 CST)
- Re: AMBER: Hbonds restraints OK but Dihedral restraints not applied David A. Case (Mon Jan 03 2005 - 10:34:09 CST)
- Re: AMBER: MM_PBSA fillratio error Ray Luo (Mon Jan 03 2005 - 16:28:46 CST)
- AMBER: AMBER related employment Anthony Fejes (Mon Jan 03 2005 - 19:43:24 CST)
- AMBER: lipid bilayer membrane force field parameter Xiaoqing,Wang (Tue Jan 04 2005 - 03:51:47 CST)
- Re: AMBER: Hbonds restraints OK but Dihedral restraints not applied pl (Tue Jan 04 2005 - 05:27:07 CST)
- Re: AMBER: Hbonds restraints OK but Dihedral restraints not applied Carlos Simmerling (Tue Jan 04 2005 - 06:47:03 CST)
- Re: AMBER: Hbonds restraints OK but Dihedral restraints not applied pl (Tue Jan 04 2005 - 07:25:39 CST)
- Re: AMBER: Hbonds restraints OK but Dihedral restraints not applied Bill Ross (Tue Jan 04 2005 - 12:07:49 CST)
- AMBER: Steered Molecular Dynamics with AMBER? Rino Ragno (Tue Jan 04 2005 - 16:33:09 CST)
- Re: AMBER: Steered Molecular Dynamics with AMBER? Carlos Simmerling (Tue Jan 04 2005 - 16:47:38 CST)
- Re: AMBER: Dummy Atoms: How to create them? Ilyas Yildirim (Tue Jan 04 2005 - 21:25:24 CST)
- Re: AMBER: Steered Molecular Dynamics with AMBER? David E. Konerding (Tue Jan 04 2005 - 22:44:15 CST)
- Re: AMBER: MM_PBSA fillratio error Jiten (Wed Jan 05 2005 - 00:54:35 CST)
- Re: AMBER: Steered Molecular Dynamics with AMBER? Piotr Cieplak (Wed Jan 05 2005 - 01:29:41 CST)
- Re: AMBER: Steered Molecular Dynamics with AMBER? aldo jongejan (Wed Jan 05 2005 - 01:46:44 CST)
- AMBER: lipid parameter file Xiaoqing,Wang (Wed Jan 05 2005 - 02:23:07 CST)
- AMBER: distance between images cailliez (Wed Jan 05 2005 - 04:34:46 CST)
- AMBER: MM_PBSA arguments for MM calculations Nelson Fonseca (Wed Jan 05 2005 - 05:54:30 CST)
- AMBER: Floating Exception in sander anshul_at_imtech.res.in (Wed Jan 05 2005 - 17:26:20 CST)
- Re: AMBER: Floating Exception in sander Robert Duke (Wed Jan 05 2005 - 07:55:22 CST)
- Re: AMBER: Steered Molecular Dynamics with AMBER? Adrian E. Roitberg (Wed Jan 05 2005 - 08:13:10 CST)
- Re: AMBER: Steered Molecular Dynamics with AMBER? Anthony Fejes (Wed Jan 05 2005 - 10:26:05 CST)
- Re: AMBER: distance between images Thomas E. Cheatham, III (Wed Jan 05 2005 - 11:29:19 CST)
- Re: AMBER: Dummy Atoms: How to create them? David A. Case (Wed Jan 05 2005 - 11:40:11 CST)
- Re: AMBER: Dummy Atoms: How to create them? Ilyas Yildirim (Wed Jan 05 2005 - 15:05:22 CST)
- AMBER: General Question about AMBER's Free Energy Perturbation Method Chris Moth (Wed Jan 05 2005 - 16:06:33 CST)
- Re: AMBER: How can i use AMBER with CHARMM forcefield parameter? David A. Case (Thu Jan 06 2005 - 08:23:44 CST)
- AMBER: about install amber8 on windows xiaowen (Thu Jan 06 2005 - 16:56:53 CST)
- AMBER: recompiling problem on IBM aix Yuuki A. Komata (Thu Jan 06 2005 - 20:35:46 CST)
- Re: AMBER: Floating Exception in sander anshul_at_imtech.res.in (Fri Jan 07 2005 - 08:14:12 CST)
- AMBER: Weighting of different restraint types? pl (Fri Jan 07 2005 - 07:03:15 CST)
- Re: AMBER: Floating Exception in sander Robert Duke (Fri Jan 07 2005 - 07:15:44 CST)
- AMBER: Questions about sander.QMMM Cenk Andac (Fri Jan 07 2005 - 09:51:56 CST)
- Re: AMBER: Questions about sander.QMMM M. L. Dodson (Fri Jan 07 2005 - 10:26:25 CST)
- Re: AMBER: Questions about sander.QMMM M. L. Dodson (Fri Jan 07 2005 - 10:45:45 CST)
- Re: AMBER: about install amber8 on windows David A. Case (Fri Jan 07 2005 - 12:59:27 CST)
- Re: AMBER: recompiling problem on IBM aix David A. Case (Fri Jan 07 2005 - 13:03:30 CST)
- RE: AMBER: Questions about sander.QMMM Ross Walker (Fri Jan 07 2005 - 13:38:29 CST)
- Re: AMBER: Weighting of different restraint types? David A. Case (Fri Jan 07 2005 - 18:06:37 CST)
- RE: AMBER: Questions about sander.QMMM Cenk Andac (Sat Jan 08 2005 - 03:57:22 CST)
- AMBER: dynamics Germán Sciaini (Sat Jan 08 2005 - 13:51:30 CST)
- Re: AMBER: dynamics David A. Case (Sat Jan 08 2005 - 15:05:53 CST)
- AMBER: Floating Exception and installation on Digital Unix. anshul_at_imtech.res.in (Sun Jan 09 2005 - 21:32:11 CST)
- Re: AMBER: Floating Exception and installation on Digital Unix. Robert Duke (Sun Jan 09 2005 - 11:54:16 CST)
- AMBER: error in parallel gsmith_at_ibab.ac.in (Mon Jan 10 2005 - 02:18:51 CST)
- Re: AMBER: Weighting of different restraint types? pl (Mon Jan 10 2005 - 03:27:19 CST)
- AMBER: istart2 gsmith_at_ibab.ac.in (Mon Jan 10 2005 - 07:14:15 CST)
- AMBER: guanidinium chloride Monica Civera (Mon Jan 10 2005 - 09:27:38 CST)
- RE: AMBER: guanidinium chloride Nagy, Peter I. (Mon Jan 10 2005 - 11:15:41 CST)
- RE: AMBER: istart2 Ross Walker (Mon Jan 10 2005 - 11:18:32 CST)
- AMBER: Copper library? Cenk Andac (Mon Jan 10 2005 - 12:31:51 CST)
- AMBER: the DNA conformation after engery minimization using NMODE Xiaowei (David) Li (Mon Jan 10 2005 - 13:32:26 CST)
- AMBER: .dat and frcmod files Ilyas Yildirim (Mon Jan 10 2005 - 16:10:36 CST)
- Re: AMBER: .dat and frcmod files Anthony Fejes (Mon Jan 10 2005 - 16:47:12 CST)
- AMBER: AMBER tutorial ambpdb question Kara Wald (Mon Jan 10 2005 - 19:33:44 CST)
- RE: AMBER: AMBER tutorial ambpdb question Ross Walker (Mon Jan 10 2005 - 20:14:49 CST)
- Re: AMBER: AMBER tutorial ambpdb question David A. Case (Mon Jan 10 2005 - 21:16:10 CST)
- Re: AMBER: the DNA conformation after engery minimization using NMODE Bill Ross (Mon Jan 10 2005 - 21:56:25 CST)
- Re: AMBER: Floating Exception and installation on Digital Unix. anshul_at_imtech.res.in (Tue Jan 11 2005 - 09:17:32 CST)
- Re: AMBER: .dat and frcmod files Germán Sciaini (Tue Jan 11 2005 - 04:46:03 CST)
- Re: AMBER: Copper library? Germán Sciaini (Tue Jan 11 2005 - 04:40:55 CST)
- AMBER: parallel run gsmith_at_ibab.ac.in (Tue Jan 11 2005 - 04:27:20 CST)
- Re: AMBER: Floating Exception and installation on Digital Unix. Robert Duke (Tue Jan 11 2005 - 07:18:20 CST)
- Re: AMBER: Floating Exception and installation on Digital Unix. M. L. Dodson (Tue Jan 11 2005 - 09:46:45 CST)
- AMBER: QM/MM with pmemd Ping Lin (Tue Jan 11 2005 - 13:08:45 CST)
- AMBER: sander free energy calculation Cai, Yufeng (Tue Jan 11 2005 - 13:47:03 CST)
- Re: AMBER: Dummy Atoms: How to create them? David A. Case (Tue Jan 11 2005 - 23:54:02 CST)
- AMBER: PB dynamics Nelson Fonseca (Wed Jan 12 2005 - 04:06:33 CST)
- AMBER: amber8 parallel sander yen li (Wed Jan 12 2005 - 04:57:19 CST)
- AMBER: van der waals parameters Monica Civera (Wed Jan 12 2005 - 05:42:53 CST)
- Re: AMBER: amber8 parallel sander Carlos Simmerling (Wed Jan 12 2005 - 06:38:30 CST)
- Re: AMBER: van der waals parameters Carlos Simmerling (Wed Jan 12 2005 - 06:41:31 CST)
- Re: AMBER: amber8 parallel sander Robert Duke (Wed Jan 12 2005 - 07:03:05 CST)
- Re: AMBER: amber8 parallel sander yen li (Wed Jan 12 2005 - 07:54:48 CST)
- Re: AMBER: amber8 parallel sander Carlos Simmerling (Wed Jan 12 2005 - 08:03:32 CST)
- AMBER: units Monica Civera (Wed Jan 12 2005 - 09:12:19 CST)
- Re: AMBER: amber8 parallel sander Robert Duke (Wed Jan 12 2005 - 09:20:40 CST)
- Re: AMBER: amber8 parallel sander Carlos Simmerling (Wed Jan 12 2005 - 09:30:22 CST)
- Re: AMBER: PB dynamics David A. Case (Wed Jan 12 2005 - 11:26:19 CST)
- Re: AMBER: units David A. Case (Wed Jan 12 2005 - 11:22:03 CST)
- Re: AMBER: amber8 parallel sander Bill Ross (Wed Jan 12 2005 - 14:12:18 CST)
- AMBER: Problem with restart file Azira Muhamad (Thu Jan 13 2005 - 01:45:30 CST)
- Re: AMBER: units Germán Sciaini (Thu Jan 13 2005 - 05:35:07 CST)
- Re: AMBER: units Germán Sciaini (Thu Jan 13 2005 - 05:33:16 CST)
- Re: AMBER: Problem with restart file Melinda Layten (Thu Jan 13 2005 - 08:53:42 CST)
- Re: AMBER: Problem with restart file Guanglei Cui (Thu Jan 13 2005 - 09:40:14 CST)
- AMBER: PBCAL=0. Problems in MM/PBSA Javier Perez Miron (Thu Jan 13 2005 - 14:41:29 CST)
- Re: AMBER: PBCAL=0. Problems in MM/PBSA Holger Gohlke (Fri Jan 14 2005 - 01:31:45 CST)
- AMBER: last call for early registrations for "Horizons2005" Vlad Cojocaru (Fri Jan 14 2005 - 07:19:00 CST)
- AMBER: protonate Gustavo Pierdominici Sottile (Fri Jan 14 2005 - 12:05:49 CST)
- Re: AMBER: protonate David A. Case (Fri Jan 14 2005 - 12:36:35 CST)
- FW: AMBER: parametrization problem Ross Walker (Fri Jan 14 2005 - 16:39:12 CST)
- RE: FW: AMBER: parametrization problem Vineet Pande (Sat Jan 15 2005 - 05:15:39 CST)
- AMBER: Coordinate Superimposition in PTRAJ Vineet Pande (Sun Jan 16 2005 - 05:42:09 CST)
- Re: AMBER: Coordinate Superimposition in PTRAJ Carlos Simmerling (Sun Jan 16 2005 - 08:56:30 CST)
- RE: AMBER: Coordinate Superimposition in PTRAJ Ross Walker (Sun Jan 16 2005 - 12:59:48 CST)
- AMBER: How to set AMBER parameter files for lipid? Xiaoqing Wang (Sun Jan 16 2005 - 19:38:49 CST)
- RE: AMBER: Coordinate Superimposition in PTRAJ Vineet Pande (Mon Jan 17 2005 - 03:45:20 CST)
- AMBER: Sander Replica Exchange exits with unit 6 error] Jordi Rodrigo (Mon Jan 17 2005 - 02:02:51 CST)
- AMBER: distance restraint and file fort.35 Fabien Cailliez (Mon Jan 17 2005 - 05:34:00 CST)
- Re: AMBER: Sander Replica Exchange exits with unit 6 error] Carlos Simmerling (Mon Jan 17 2005 - 07:58:20 CST)
- AMBER: RMS fluctuations along modes obtained from PCA Majid moghaddam (Mon Jan 17 2005 - 07:47:56 CST)
- AMBER: Sander Replica Exchange exits with unit 6 error Jordi Rodrigo (Mon Jan 17 2005 - 06:37:00 CST)
- Re: AMBER: Sander Replica Exchange exits with unit 6 error Carlos Simmerling (Mon Jan 17 2005 - 08:45:56 CST)
- Re: AMBER: distance restraint and file fort.35 Robert Duke (Mon Jan 17 2005 - 08:48:57 CST)
- AMBER: Sander Replica Exchange exits with unit 6 error Jordi Rodrigo (Mon Jan 17 2005 - 07:25:14 CST)
- Re: AMBER: distance restraint and file fort.35 Fabien Cailliez (Mon Jan 17 2005 - 09:58:03 CST)
- Re: AMBER: Sander Replica Exchange exits with unit 6 error Guanglei Cui (Mon Jan 17 2005 - 10:09:03 CST)
- AMBER: new aminoacid Gustavo Pierdominici Sottile (Mon Jan 17 2005 - 10:26:32 CST)
- AMBER: Sander Replica Exchange exits with unit 6 error Jordi Rodrigo (Mon Jan 17 2005 - 08:57:53 CST)
- Re: AMBER: Sander Replica Exchange exits with unit 6 error Carlos Simmerling (Mon Jan 17 2005 - 11:17:56 CST)
- Re: AMBER: new aminoacid David A. Case (Mon Jan 17 2005 - 11:56:34 CST)
- Re: AMBER: amber8 parallel sander yen li (Mon Jan 17 2005 - 11:55:26 CST)
- Re: AMBER: amber8 parallel sander Robert Duke (Mon Jan 17 2005 - 12:13:10 CST)
- RE: AMBER: new aminoacid Ross Walker (Mon Jan 17 2005 - 12:34:05 CST)
- AMBER: Compiling AMBER 8 for Mac OSX (Parallel) nallen_at_unca.edu (Mon Jan 17 2005 - 11:41:06 CST)
- Re: AMBER: Sander Replica Exchange exits with unit 6 error Guanglei Cui (Mon Jan 17 2005 - 13:31:07 CST)
- AMBER: H-atom types attached to a carbon atom next to carbonyl group Takashi Nakamura (Mon Jan 17 2005 - 11:52:56 CST)
- RE: AMBER: H-atom types attached to a carbon atom next to carbonyl group Vineet Pande (Mon Jan 17 2005 - 14:32:37 CST)
- AMBER: SO4 prep file Jagdish Rai (Tue Jan 18 2005 - 06:36:42 CST)
- Re: AMBER: SO4 prep file scopio (Tue Jan 18 2005 - 06:57:29 CST)
- AMBER: details of new aminoacid Gustavo Pierdominici Sottile (Tue Jan 18 2005 - 07:01:15 CST)
- AMBER: GB differences between AMBER7 and AMBER8 Fabien Cailliez (Tue Jan 18 2005 - 07:53:04 CST)
- Re: AMBER: GB differences between AMBER7 and AMBER8 Carlos Simmerling (Tue Jan 18 2005 - 08:08:20 CST)
- AMBER: problem with position restraints (refc file) pl (Tue Jan 18 2005 - 09:25:27 CST)
- Re: AMBER: details of new aminoacid David A. Case (Tue Jan 18 2005 - 10:01:20 CST)
- Re: AMBER: problem with position restraints (refc file) Carlos Simmerling (Tue Jan 18 2005 - 10:03:03 CST)
- Re: AMBER: protonate myang (Tue Jan 18 2005 - 10:07:12 CST)
- AMBER: Amber8 installation problems on Sparc/Solaris9 Joe Nolan (Tue Jan 18 2005 - 10:17:35 CST)
- AMBER: Sander Replica Exchange exits with unit 6 error Jordi Rodrigo (Tue Jan 18 2005 - 08:46:27 CST)
- Re: AMBER: Amber8 installation problems on Sparc/Solaris9 David A. Case (Tue Jan 18 2005 - 10:48:33 CST)
- Re: AMBER: problem with position restraints (refc file) pl (Tue Jan 18 2005 - 11:13:17 CST)
- Re: AMBER: problem with position restraints (refc file) Carlos Simmerling (Tue Jan 18 2005 - 11:36:55 CST)
- Re: AMBER: Compiling AMBER 8 for Mac OSX (Parallel) Emmanuel Giudice (Tue Jan 18 2005 - 00:09:47 CST)
- AMBER: Converting prmtop and inpcrd files Andrew Box (Tue Jan 18 2005 - 17:02:02 CST)
- Re: AMBER: Converting prmtop and inpcrd files Bill Ross (Tue Jan 18 2005 - 17:43:04 CST)
- Re: AMBER: problem with position restraints (refc file) pl (Wed Jan 19 2005 - 05:47:18 CST)
- Re: AMBER: RMS fluctuations along modes obtained from PCA Holger Gohlke (Wed Jan 19 2005 - 08:51:10 CST)
- AMBER: Scaling of charges in a polarizable simulation ! Pradipta Bandyopadhyay (Wed Jan 19 2005 - 10:02:37 CST)
- AMBER: IGB parameter Javier Perez Miron (Wed Jan 19 2005 - 11:09:38 CST)
- AMBER: enhanced sampling methods Vlad Cojocaru (Wed Jan 19 2005 - 12:13:58 CST)
- Re: AMBER: Scaling of charges in a polarizable simulation ! Piotr Cieplak (Wed Jan 19 2005 - 12:14:05 CST)
- RE: AMBER: Compiling AMBER 8 for Mac OSX (Parallel) Ross Walker (Wed Jan 19 2005 - 12:23:40 CST)
- AMBER: ptraj analysis Thomas E. Cheatham, III (Wed Jan 19 2005 - 12:16:17 CST)
- Re: AMBER: IGB parameter Furse, Kristina Elisabet (Wed Jan 19 2005 - 13:33:13 CST)
- Re: AMBER: Scaling of charges in a polarizable simulation ! David A. Case (Wed Jan 19 2005 - 14:11:08 CST)
- Re: AMBER: ptraj analysis David A. Case (Wed Jan 19 2005 - 14:24:58 CST)
- Re: AMBER: enhanced sampling methods David A. Case (Wed Jan 19 2005 - 14:34:24 CST)
- AMBER: AMBER8: compiling under cygwin using lahey fortran Rino Ragno (Wed Jan 19 2005 - 16:13:07 CST)
- Re: AMBER: Scaling of charges in a polarizable simulation ! Pradipta Bandyopadhyay (Wed Jan 19 2005 - 22:54:13 CST)
- Re: AMBER: Scaling of charges in a polarizable simulation ! Piotr Cieplak (Thu Jan 20 2005 - 00:56:04 CST)
- Re: AMBER: ptraj analysis Holger Gohlke (Thu Jan 20 2005 - 01:28:27 CST)
- AMBER:Hydroxy Proline S.Sundar Raman (Thu Jan 20 2005 - 03:19:42 CST)
- AMBER: pmemd and distance restraint Fabien Cailliez (Thu Jan 20 2005 - 04:39:20 CST)
- Re: AMBER: pmemd and distance restraint Robert Duke (Thu Jan 20 2005 - 06:41:30 CST)
- AMBER: some question about MM-PBSA scopio (Thu Jan 20 2005 - 09:10:39 CST)
- AMBER: Cutoff for anal Harianto (Thu Jan 20 2005 - 11:50:14 CST)
- AMBER: new tutorial available David A. Case (Thu Jan 20 2005 - 13:06:30 CST)
- Re: AMBER: Cutoff for anal David A. Case (Thu Jan 20 2005 - 13:17:31 CST)
- AMBER: Can someone recommend a tutorial? Kara Wald (Thu Jan 20 2005 - 14:28:46 CST)
- RE: AMBER: Can someone recommend a tutorial? Ross Walker (Thu Jan 20 2005 - 14:37:22 CST)
- AMBER: sander failure ygao_at_phase1.unl.edu (Thu Jan 20 2005 - 15:46:56 CST)
- RE: AMBER: sander failure Ross Walker (Thu Jan 20 2005 - 16:04:32 CST)
- RE: AMBER: sander failure ygao_at_phase1.unl.edu (Thu Jan 20 2005 - 16:09:56 CST)
- Re: AMBER: sander failure Carlos Simmerling (Thu Jan 20 2005 - 16:20:00 CST)
- RE: AMBER: sander failure Ross Walker (Thu Jan 20 2005 - 16:26:58 CST)
- RE: AMBER: sander failure ygao_at_phase1.unl.edu (Thu Jan 20 2005 - 16:31:37 CST)
- RE: AMBER: sander failure Ross Walker (Thu Jan 20 2005 - 16:47:34 CST)
- Re: AMBER: sander failure Asim Okur (Thu Jan 20 2005 - 16:50:25 CST)
- AMBER: Suspended (tty input) ygao_at_phase1.unl.edu (Thu Jan 20 2005 - 17:39:48 CST)
- RE: AMBER: Suspended (tty input) Ross Walker (Thu Jan 20 2005 - 17:58:13 CST)
- Re: AMBER: Suspended (tty input) Thomas E. Cheatham, III (Thu Jan 20 2005 - 18:09:16 CST)
- Re: AMBER: pmemd and distance restraint Robert Duke (Thu Jan 20 2005 - 21:12:17 CST)
- AMBER: &dipoles in sander Cenk Andac (Fri Jan 21 2005 - 05:59:47 CST)
- AMBER: mm_pbsa example doesn't run Yuuki Komata (Fri Jan 21 2005 - 06:10:48 CST)
- AMBER: amber 8 installation Stern, Julie (Fri Jan 21 2005 - 11:28:17 CST)
- Re: AMBER: amber 8 installation David A. Case (Fri Jan 21 2005 - 11:55:50 CST)
- Re: AMBER: amber 8 installation Robert Duke (Fri Jan 21 2005 - 12:03:42 CST)
- RE: AMBER: &dipoles in sander Ross Walker (Fri Jan 21 2005 - 12:26:24 CST)
- AMBER: Andersen thermostat: target T? Arantxa Sanz (Fri Jan 21 2005 - 13:06:01 CST)
- AMBER: carnal - water-mediated HBond Sichun Yang (Fri Jan 21 2005 - 16:36:52 CST)
- Re: AMBER: Andersen thermostat: target T? David A. Case (Fri Jan 21 2005 - 18:23:17 CST)
- AMBER: eedmeth=5 Lihua Wang (Fri Jan 21 2005 - 18:20:59 CST)
- AMBER: problem runing parallel (REM) on tru64 Sergio E. Wong (Fri Jan 21 2005 - 18:22:26 CST)
- AMBER: nmode calculation mingche Pan (Fri Jan 21 2005 - 19:43:32 CST)
- RE: AMBER: &dipoles in sander Cenk Andac (Sat Jan 22 2005 - 03:47:50 CST)
- Re: AMBER: eedmeth=5 David A. Case (Sat Jan 22 2005 - 12:20:22 CST)
- Re: AMBER: problem runing parallel (REM) on tru64 David A. Case (Sat Jan 22 2005 - 12:25:55 CST)
- RE: AMBER: &dipoles in sander Ross Walker (Sat Jan 22 2005 - 13:11:54 CST)
- Re: AMBER: problem runing parallel (REM) on tru64 Sergio E. Wong (Sat Jan 22 2005 - 14:44:23 CST)
- Re: AMBER: carnal - water-mediated HBond Bill Ross (Sat Jan 22 2005 - 22:49:09 CST)
- AMBER: Question about TI integral method tanc_at_uci.edu (Sun Jan 23 2005 - 04:01:33 CST)
- RE: AMBER: eedmeth=5 Vineet Pande (Sun Jan 23 2005 - 05:46:23 CST)
- AMBER: D-amino acid prep-files(simple method) Jagdish Rai (Sun Jan 23 2005 - 08:18:45 CST)
- Re: AMBER: carnal - water-mediated HBond Jiri Sponer (Sun Jan 23 2005 - 08:52:55 CST)
- Re: AMBER: D-amino acid prep-files(simple method) FyD (Sun Jan 23 2005 - 14:05:38 CST)
- AMBER: system size limit Guanglei Cui (Sun Jan 23 2005 - 23:54:06 CST)
- Re: AMBER: Question about TI integral method David A. Case (Mon Jan 24 2005 - 00:41:26 CST)
- Re: AMBER: system size limit David A. Case (Mon Jan 24 2005 - 00:56:30 CST)
- AMBER: What does a crash mean while running a md simulation? shuli kang (Sun Jan 23 2005 - 23:56:00 CST)
- AMBER: FW: amber 8 problem Vojtěch Klusák (Mon Jan 24 2005 - 02:13:47 CST)
- RE: AMBER: Andersen thermostat: target T? Arantxa Sanz (Mon Jan 24 2005 - 04:18:05 CST)
- AMBER: nmode calculation mingche Pan (Mon Jan 24 2005 - 09:34:18 CST)
- AMBER: AMBER 8: Freeze AND restrain questions Guillaume Bollot (Mon Jan 24 2005 - 10:19:11 CST)
- Re: AMBER: AMBER 8: Freeze AND restrain questions Viktor Hornak (Mon Jan 24 2005 - 12:02:53 CST)
- RE: AMBER: nmode calculation Ross Walker (Mon Jan 24 2005 - 13:13:59 CST)
- RE: AMBER: What does a crash mean while running a md simulation? Ross Walker (Mon Jan 24 2005 - 13:19:48 CST)
- AMBER: test suite possible failures Stern, Julie (Mon Jan 24 2005 - 13:39:42 CST)
- AMBER: amber 8 benchmarks dec alpha Sergio E. Wong (Mon Jan 24 2005 - 16:08:14 CST)
- RE: AMBER: nmode calculation mingche Pan (Mon Jan 24 2005 - 16:12:13 CST)
- Re: AMBER: amber 8 benchmarks dec alpha Robert Duke (Mon Jan 24 2005 - 16:27:50 CST)
- Re: AMBER: test suite possible failures David A. Case (Mon Jan 24 2005 - 16:38:21 CST)
- Re: AMBER: amber 8 benchmarks dec alpha Sergio E. Wong (Mon Jan 24 2005 - 17:54:41 CST)
- AMBER: How to make PDB file by myself Mayumi Haga (Mon Jan 24 2005 - 22:23:32 CST)
- AMBER: TI with electrostatic decoupling at sander yipinl_at_umich.edu (Mon Jan 24 2005 - 23:15:43 CST)
- Re: AMBER: What does a crash mean while running a md simulation? shuli kang (Mon Jan 24 2005 - 23:58:54 CST)
- RE: AMBER: What does a crash mean while running a md simulation? Ross Walker (Tue Jan 25 2005 - 00:28:32 CST)
- Re: AMBER: What does a crash mean while running a md simulation? shuli kang (Tue Jan 25 2005 - 01:35:45 CST)
- AMBER: calculating electrostatic potential Vlad Cojocaru (Tue Jan 25 2005 - 04:59:48 CST)
- RE: AMBER: How to make PDB file by myself Vineet Pande (Tue Jan 25 2005 - 05:06:42 CST)
- Re: AMBER: calculating electrostatic potential david.evans_at_ulsop.ac.uk (Tue Jan 25 2005 - 05:24:52 CST)
- AMBER: PBSA residual and pairwise decompostion Jiten (Tue Jan 25 2005 - 07:43:38 CST)
- AMBER: LEAP heddi (Tue Jan 25 2005 - 07:42:36 CST)
- AMBER: Error while running resp. praveena moldy (Tue Jan 25 2005 - 08:24:01 CST)
- AMBER: Error while running resp. praveena moldy (Tue Jan 25 2005 - 08:28:55 CST)
- AMBER: Sander Replica Exchange exits with unit 6 error Jordi Rodrigo (Tue Jan 25 2005 - 08:28:13 CST)
- Re: AMBER: How to make PDB file by myself David A. Case (Tue Jan 25 2005 - 10:40:21 CST)
- Re: AMBER: TI with electrostatic decoupling at sander David A. Case (Tue Jan 25 2005 - 10:41:36 CST)
- Re: AMBER: Error while running resp. David A. Case (Tue Jan 25 2005 - 10:43:32 CST)
- AMBER: gold atoms Stern, Julie (Tue Jan 25 2005 - 10:53:09 CST)
- Re: AMBER: calculating electrostatic potential Ilyas Yildirim (Tue Jan 25 2005 - 12:26:32 CST)
- AMBER: collision frequency in GBSA dynamics Giulio Rastelli (Tue Jan 25 2005 - 12:33:33 CST)
- AMBER: NAN errors Venkata S Koppuravuri (Tue Jan 25 2005 - 15:39:45 CST)
- RE: AMBER: NAN errors Ross Walker (Tue Jan 25 2005 - 15:56:33 CST)
- Re: AMBER: NAN errors David A. Case (Tue Jan 25 2005 - 16:09:11 CST)
- Re: AMBER: collision frequency in GBSA dynamics David A. Case (Tue Jan 25 2005 - 16:23:34 CST)
- AMBER: ANTECHAMBER & DIVCON Vineet Pande (Wed Jan 26 2005 - 04:18:17 CST)
- Re: AMBER: ANTECHAMBER & DIVCON Julien Michel (Wed Jan 26 2005 - 05:09:05 CST)
- Re: AMBER: new tutorial available Ilyas Yildirim (Wed Jan 26 2005 - 05:59:16 CST)
- Re: AMBER: new tutorial available Julien Michel (Wed Jan 26 2005 - 07:48:55 CST)
- AMBER: how to solvate in TIP5P box ygao_at_phase1.unl.edu (Wed Jan 26 2005 - 09:59:43 CST)
- AMBER: pmemd and restraints Filip Lankas (Wed Jan 26 2005 - 11:01:50 CST)
- Re: AMBER: TI with electrostatic decoupling at sander yipinl_at_umich.edu (Wed Jan 26 2005 - 11:19:43 CST)
- Re: AMBER: new tutorial available David A. Case (Wed Jan 26 2005 - 11:27:58 CST)
- Re: AMBER: pmemd and restraints Robert Duke (Wed Jan 26 2005 - 11:45:01 CST)
- RE: AMBER: how to solvate in TIP5P box Ross Walker (Wed Jan 26 2005 - 12:26:22 CST)
- AMBER: Increasing Volume with ntb=1 Harianto (Wed Jan 26 2005 - 14:12:29 CST)
- RE: AMBER: Increasing Volume with ntb=1 Ross Walker (Wed Jan 26 2005 - 14:42:13 CST)
- Re: AMBER: Increasing Volume with ntb=1 Harianto (Wed Jan 26 2005 - 17:19:59 CST)
- RE: AMBER: Increasing Volume with ntb=1 Ross Walker (Wed Jan 26 2005 - 16:59:57 CST)
- Re: AMBER: TI with electrostatic decoupling at sander David A. Case (Wed Jan 26 2005 - 23:51:32 CST)
- Re: AMBER: pmemd and restraints Fabien Cailliez (Thu Jan 27 2005 - 03:01:31 CST)
- AMBER:idecomp B (Thu Jan 27 2005 - 05:22:37 CST)
- Re: AMBER: pmemd and restraints Robert Duke (Thu Jan 27 2005 - 07:15:00 CST)
- AMBER: replica exchange trouble with unit 6 Yuuki Komata (Thu Jan 27 2005 - 08:39:03 CST)
- AMBER: antechamber error message Yanze Zhang (Thu Jan 27 2005 - 09:02:46 CST)
- Re: AMBER: replica exchange trouble with unit 6 Carlos Simmerling (Thu Jan 27 2005 - 09:10:20 CST)
- Re: AMBER: Increasing Volume with ntb=1 Harianto (Thu Jan 27 2005 - 11:49:52 CST)
- Re: AMBER: TI with electrostatic decoupling at sander yipinl_at_umich.edu (Thu Jan 27 2005 - 11:39:46 CST)
- RE: AMBER: Increasing Volume with ntb=1 Ross Walker (Thu Jan 27 2005 - 12:13:27 CST)
- AMBER: problem with pressure equilibration Cenk Andac (Thu Jan 27 2005 - 16:23:59 CST)
- RE: AMBER: problem with pressure equilibration Ross Walker (Thu Jan 27 2005 - 16:45:20 CST)
- Re: AMBER: ANTECHAMBER & DIVCON David A. Case (Thu Jan 27 2005 - 19:12:23 CST)
- Re: AMBER: TI with electrostatic decoupling at sander David A. Case (Thu Jan 27 2005 - 19:27:10 CST)
- Re: AMBER: replica exchange trouble with unit 6 Yuuki Komata (Thu Jan 27 2005 - 19:27:50 CST)
- AMBER: question about xwin load pdb file xiaowen (Thu Jan 27 2005 - 23:04:57 CST)
- RE: AMBER: question about xwin load pdb file Ross Walker (Thu Jan 27 2005 - 23:38:30 CST)
- RE: AMBER: &dipoles in sander Cenk Andac (Fri Jan 28 2005 - 04:04:21 CST)
- AMBER: sugar pucker with Carnal and ptraj Vlad Cojocaru (Fri Jan 28 2005 - 08:56:23 CST)
- AMBER: pucker: deatails about pucker calculation Vlad Cojocaru (Fri Jan 28 2005 - 09:13:13 CST)
- AMBER: question about xwin load pdb file xiaowen (Fri Jan 28 2005 - 10:48:28 CST)
- AMBER: plane definition in ptraj Vlad Cojocaru (Fri Jan 28 2005 - 12:00:23 CST)
- RE: AMBER: &dipoles in sander Ross Walker (Fri Jan 28 2005 - 12:10:21 CST)
- RE: AMBER: question about xwin load pdb file Ross Walker (Fri Jan 28 2005 - 12:20:18 CST)
- Re: AMBER: &dipoles in sander David A. Case (Fri Jan 28 2005 - 12:21:59 CST)
- RE: AMBER: problem with pressure equilibration Cenk Andac (Fri Jan 28 2005 - 13:18:02 CST)
- Re: AMBER: &dipoles in sander Cenk Andac (Fri Jan 28 2005 - 13:25:36 CST)
- Re: AMBER: antechamber error message David A. Case (Fri Jan 28 2005 - 16:00:22 CST)
- AMBER: Problems with xLEaP Kara Di Giorgio (Fri Jan 28 2005 - 16:04:14 CST)
- RE: AMBER: Problems with xLEaP Ross Walker (Fri Jan 28 2005 - 16:19:52 CST)
- Re: AMBER: Problems with xLEaP Bill Ross (Fri Jan 28 2005 - 16:26:12 CST)
- AMBER: NCOPY definition Kenley Barrett (Fri Jan 28 2005 - 16:59:14 CST)
- RE: AMBER: NCOPY definition Ross Walker (Fri Jan 28 2005 - 17:18:05 CST)
- Re: AMBER: new tutorial available Difei Wang (Fri Jan 28 2005 - 18:08:59 CST)
- Re: AMBER: Problems with xLEaP Kara Di Giorgio (Fri Jan 28 2005 - 18:14:02 CST)
- Re: AMBER: Problems with xLEaP Kara Di Giorgio (Fri Jan 28 2005 - 18:18:44 CST)
- RE: AMBER: Problems with xLEaP Ross Walker (Fri Jan 28 2005 - 18:29:10 CST)
- Re: AMBER: Problems with xLEaP Kara Di Giorgio (Fri Jan 28 2005 - 18:48:52 CST)
- Re: AMBER: new tutorial available David A. Case (Fri Jan 28 2005 - 18:57:28 CST)
- AMBER: Problem in ptraj anshul_at_imtech.res.in (Mon Jan 31 2005 - 16:23:30 CST)
- AMBER: amber 8 problem Vojtěch Klusák (Mon Jan 31 2005 - 07:01:35 CST)
- AMBER: gaussian output file Yanze Zhang (Mon Jan 31 2005 - 11:09:40 CST)
- Re: AMBER: Problem in ptraj Furse, Kristina Elisabet (Mon Jan 31 2005 - 11:22:21 CST)
- Re: AMBER: FW: amber 8 problem David A. Case (Mon Jan 31 2005 - 12:37:08 CST)
- AMBER: skip snapshots with ptraj in amber 8.0 Eric Hu (Mon Jan 31 2005 - 13:30:58 CST)
- AMBER: Manuals need update: protonate -b and -c options gone in Amber 7 and 8 Chris Moth (Mon Jan 31 2005 - 15:39:56 CST)
- Re: AMBER: skip snapshots with ptraj in amber 8.0 Guanglei Cui (Mon Jan 31 2005 - 16:19:27 CST)
- Re: AMBER: Manuals need update: protonate -b and -c options gone in Amber 7 and 8 David A. Case (Mon Jan 31 2005 - 16:56:21 CST)
- Re: AMBER: skip snapshots with ptraj in amber 8.0 Eric Hu (Mon Jan 31 2005 - 19:08:26 CST)
- AMBER: amber8 in IBM-SP4 Jiten (Mon Jan 31 2005 - 21:32:28 CST)
- AMBER: N Metyl amino acids Andrew Box (Mon Jan 31 2005 - 23:14:47 CST)
Last message date: Sat Dec 31 2005 - 12:51:27 CST
Archived on: Sat Dec 31 2005 - 12:51:45 CST
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