AMBER Archive (2004) - Mar 2004 By Subject354 messages sorted by:
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About this archive
Starting: Mon Mar 01 2004 - 08:04:17 CST
Ending: Wed Mar 31 2004 - 19:37:50 CST
- About RESP Calculation
- AMBER:
- AMBER: [Fwd: KLAMBDA in amber7]
- AMBER: [Fwd: No timings from jac test on opteron quad]
- AMBER: a problem about alanine scan of proline
- AMBER: a question about anal
- AMBER: A Question about RESP
- AMBER: A question about RMSD calculation
- AMBER: about glycam 04
- AMBER: About glycam2004
- AMBER: About RESP Calculation
- AMBER: alignment problem using carnal
- AMBER: Amber on RedHat 3.0
- AMBER: AMBER6 manual
- AMBER: AMBER7 sander compiled on SGI R10000 fails to complete test suite
- AMBER: amber98 with amberffc+INSIGHT II
- AMBER: Amber: Equilibrated DMSO solvent box
- AMBER: Anal module on PDBs
- AMBER: antechamber download files should now be available
- AMBER: Antechamber license ?
- AMBER: Antechamber MOPAC
- AMBER: antechamber prepin
- AMBER: antechamber/mopac question
- AMBER: Assignment of parameters, missing parameters
- AMBER: Atomic Charge in Residue
- AMBER: Bad atom symbol, K+ and IB in vacuum
- AMBER: Cadmium
- AMBER: Compilation problem in SUN OS 5.7!
- AMBER: compiling on SGI
- AMBER: compiling xleap on MAC OS X.3
- AMBER: conversion of Amber 7 .pdb file to .bgf file
- AMBER: description of toplogy file format?
- AMBER: diffusion coefficient with external applied electric field
- AMBER: downloading antechamber
- AMBER: eedmeth
- Amber: Equilibrated DMSO solvent box
- AMBER: erreo in sander
- AMBER: error in minimization
- AMBER: Error while protonating a PDB file
- AMBER: EWALD BOMB?
- AMBER: Ewald calculation using PME for charged system
- AMBER: factor used in b-factor calculation
- AMBER: fix two groups
- AMBER: fluorine in mmpbsa
- AMBER: gaff: hydrogen atom types
- AMBER: General Questions
- AMBER: GIBBS + vlimit exceeded
- AMBER: gibbs dynamic memory error
- AMBER: gibbs error
- AMBER: GIBBS: FEP and TI
- AMBER: Glycam04
- AMBER: Glycam_04.prep
- AMBER: hbond analysis in ptraj(%occupied>1)
- AMBER: HBOND calculation
- AMBER: HIV-RT Nevirapin
- AMBER: How to compile antechamber?
- AMBER: How to convert charmm parameters to amber
- AMBER: How to make leap recognise inosine?
- AMBER: How to use these parameters?
- AMBER: How to use tleap convert *.pdb file to *.crd and *.top files
- AMBER: Hydrogen Bond-statistics
- AMBER: INtel Fortran 90 compiler
- AMBER: langevin dynamics
- AMBER: Leap atom removal bug?
- AMBER: literature question/residue charges
- AMBER: M7G parameters
- AMBER: make sure of the Magnesium parameters
- AMBER: MD at different pH !!
- AMBER: MD problem.
- AMBER: MD simulation of a DNA decamer
- AMBER: MM_PBSA GB parameters
- AMBER: mol2 vs. prepin
- AMBER: new wed site for amber tutorials
- AMBER: nmanal - segmentation fault
- AMBER: NMODE COMPILATION
- AMBER: NMR refinement
- AMBER: NMR restraint in sander
- AMBER: non-isotropic pressure scaling
- AMBER: Pang Zn2+ model - correction
- AMBER: Pang-model of Zn2+
- AMBER: Pasrameters for MAI
- AMBER: phosphorylated serin / histidin
- AMBER: PKA calculation
- AMBER: pka questions
- AMBER: pls forget my first question in my last email
- AMBER: PMEMD and myrinet trouble
- AMBER: PMEMD COMPILATION REDHAT
- AMBER: pmemd machinefiles
- AMBER: pmemd speedup and interactions
- AMBER: positive binding free energy
- AMBER: Preparing complex in Xleap for Amber calculations
- AMBER: Problem solved
- AMBER: Problems with xleap
- AMBER: production input file
- AMBER: protein-protein interaction
- AMBER: ptraj
- AMBER: Question about RMSD calculation
- AMBER: questions about mmpbsa
- AMBER: questions for PNA parameters
- AMBER: radial distribution
- AMBER: rdparm/ptraj writeparm
- AMBER: rdparm/ptraj writeparm + leap problem
- AMBER: recovering total force array
- AMBER: Release announcement for Amber 8
- AMBER: residence time
- AMBER: Residue Charges
- AMBER: residue insertion
- AMBER: Residue question
- AMBER: Resizing sizes.h and recompiling problem!
- AMBER: sander + child process died
- AMBER: sander + vlimit exceed...
- AMBER: SANDER general questions.
- AMBER: Sander problem with different CPU
- AMBER: segmentation fault
- AMBER: segmentation fault of minimization
- AMBER: segmentation fault when convert pdb to mol2
- AMBER: segmentation fault when running parmchk
- AMBER: segmentation fault with sander
- AMBER: solvation energy
- AMBER: Some questions in building a new residue
- AMBER: Sorry about that...
- AMBER: test output of amber8
- AMBER: tleap error and warnings
- AMBER: torsion term
- AMBER: trajectory file
- AMBER: Unbinding with different pH
- AMBER: undefined loops and protonate
- AMBER: understanding SANDER source code
- AMBER: Use tleap convert *.pdb file to *.top and *.crd file
- AMBER: using LJ 10-12 non bonded potential for glycoproteins in Amber8
- AMBER: vlimit and vmax problem
- AMBER: what's the meaning of parameter NRUN
- AMBER: xleap couldn't display any word
- AMBER: xleap don't recognize my residue/atom
- can i get help from you?
- PMEMD and myrinet trouble
- Problems with antechamber innstallation
Last message date: Thu May 05 2005 - 14:26:38 CDT
Archived on: Thu May 05 2005 - 14:29:59 CDT
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